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non port: biology/p5-bioperl-run/Makefile

Number of commits found: 26

Friday, 1 Apr 2016
13:29 mat search for other commits by this committer
Remove ${PORTSDIR}/ from dependencies, Mk and categories a, b, and c.

With hat:	portmgr
Sponsored by:	Absolight
Original commitRevision:412344 
Friday, 20 Mar 2015
09:43 mat search for other commits by this committer
Convert to new USE_GITHUB.

While there, cleanup.

Sponsored by:	Absolight
Original commitRevision:381726 
Thursday, 12 Mar 2015
23:00 adamw search for other commits by this committer
Some OCD cleanups on some of the perl@ ports.

- Remove dependencies in core
- Put testing depends in TEST_DEPENDS
- Remove unnecessary bsd.port.options.mk inclusions
- Remove checks for Perl versions that no longer exist in the ports tree
- Sort plists, some of which were so jumbled that I have to assume
  the plist was randomized before committing

A lot of the plist changes in this commit are moving PERL5_MAN3 after
SITE_PERL. It's repo churn now, but it makes updating the ports later
far easier.
Original commitRevision:381151 
Sunday, 18 Jan 2015
22:49 sunpoet search for other commits by this committer
- Simplify Makefile
- Use tab instead of space
- Sort PLIST
- Pass maintainership to perl@
Original commitRevision:377369 
Wednesday, 26 Nov 2014
13:08 mat search for other commits by this committer
Change the way Perl modules are installed, update the default Perl to 5.18.

Before, we had:

  site_perl :           lib/perl5/site_perl/5.18
  site_perl/perl_arch : lib/perl5/site_perl/5.18/mach
  perl_man3 :           lib/perl5/5.18/man/man3

Now we have:

  site_perl : lib/perl5/site_perl
  site_arch : lib/perl5/site_perl/mach/5.18
  perl_man3 : lib/perl5/site_perl/man/man3

Modules without any .so will be installed at the same place regardless of the
Perl version, minimizing the upgrade when the major Perl version is changed.
It uses a version dependent directory for modules with compiled bits.

As PERL_ARCH is no longer needed in plists, it has been removed from
PLIST_SUB.

The USE_PERL5=fixpacklist keyword is removed, the .packlist file is now
always removed, as is perllocal.pod.

The old site_perl and site_perl/arch directories have been kept in the
default Perl @INC for all Perl ports, and will be phased out as these old
Perl versions expire.

PR:		194969
Differential Revision:	https://reviews.freebsd.org/D1019
Exp-run by:	antoine
Reviewed by:	perl@
Approved by:	portmgr
Original commitRevision:373448 
Monday, 4 Aug 2014
08:54 pi search for other commits by this committer
biology/p5-bioperl-run: 1.6.1 -> 1.6.901, unbreak, stagify
Original commitRevision:363975 
Wednesday, 23 Jul 2014
16:44 bapt search for other commits by this committer
Reset maintainership for ports not staged with no pending PR

With hat:	portmgr
Original commitRevision:362705 
Thursday, 19 Jun 2014
21:31 antoine search for other commits by this committer
Mark BROKEN: Fails to configure

===>  Configuring for p5-bioperl-run-1.6.1_4
Invalid prerequisite condition '0/processing XML
data/Bio::Tools::Run::EMBOSSacd' for XML::Twig at
/usr/local/lib/perl5/site_perl/5.16/Module/Build/Base.pm line 1702.
*** [do-configure] Error code 25

Reported by:	pkg-fallout
With hat:	portmgr
Original commitRevision:358466 
Friday, 21 Feb 2014
13:35 ehaupt search for other commits by this committer
Remove trailing whitespaces from category biology
Original commitRevision:345397 
Monday, 10 Feb 2014
13:54 ehaupt search for other commits by this committer
According to the Porter's Handbook (5.12.2.3.) default options must be added to
OPTIONS_DEFINE. This policy has been implemented only recently that's why we
have many ports violating this policy.

This patch adds the default options specified in the Porter's Handbook to
OPTIONS_DEFINE where they are being used. Ports maintained by
gnome@FreeBSD.org, kde@FreeBSD.org and x11@FreeBSD.org have been excluded.

Approved by:    portmgr (bapt)
Original commitRevision:343634 
Friday, 3 Jan 2014
15:46 adamw search for other commits by this committer
Convert biology to MDOCS and MEXAMPLES
Original commitRevision:338550 
Friday, 20 Sep 2013
15:55 bapt search for other commits by this committer
Add NO_STAGE all over the place in preparation for the staging support (cat:
biology)
Original commitRevision:327709 
Saturday, 7 Sep 2013
07:44 az search for other commits by this committer
- convert to the new perl5 framework

Approved by:	portmgr (bapt@, blanket)
Original commitRevision:326575 
Saturday, 30 Jun 2012
14:48 az search for other commits by this committer
- Remove SITE_PERL from *_DEPENDS

Approved by: portmgr@ (bapt@)
Original commit
Friday, 1 Jun 2012
05:26 dinoex search for other commits by this committer
- update png to 1.5.10
Original commit
Saturday, 21 Jan 2012
17:40 eadler search for other commits by this committer
At the moment 1385 ports use BUILD_DEPENDS= ${RUN_DEPENDS} and 450
ports use BUILD_DEPENDS:= ${RUN_DEPENDS}. This patch fixes ports that are
currently broken. This is a temporary measure until we organically stop using
:= or someone(s) spend a lot of time changing all the ports over.

Explicit duplication > := > = and this just moves ports one step to the left

Approved by:    portmgr
Original commit
Sunday, 28 Mar 2010
06:47 dinoex search for other commits by this committer
- update to 1.4.1
Reviewed by:    exp8 run on pointyhat
Supported by:   miwi
Original commit
Friday, 5 Feb 2010
11:46 dinoex search for other commits by this committer
- update to jpeg-8
Original commit
Sunday, 2 Aug 2009
20:00 pav search for other commits by this committer
- Relax check on bioperl version; people keep forgetting to update this check
  when updating bioperl port

Reported by:    pointyhat
Original commit
Friday, 31 Jul 2009
13:57 dinoex search for other commits by this committer
- bump all port that indirectly depends on libjpeg and have not yet been bumped
or updated
Requested by:   edwin
Original commit
Thursday, 19 Mar 2009
20:54 miwi search for other commits by this committer
- Update to 1.6.1

PR:             132122
Submitted by:   Wen Heping <wenheping@gmail.com>
Approved by:    maintainer
Original commit
Thursday, 15 Jan 2009
22:47 pav search for other commits by this committer
- Unbreak after p5-bioperl changed portrevision
Original commit
Thursday, 17 Apr 2008
14:30 araujo search for other commits by this committer
- Take advantage of CPAN macro from bsd.sites.mk, change
${MASTER_SITE_PERL_CPAN} to CPAN.

PR:             ports/122674
Submitted by:   Philip M. Gollucci <pgollucci@p6m7g8.com>
Reworked by:    araujo (myself)
Approved by:    portmgr (pav)
Original commit
Saturday, 8 Sep 2007
00:53 linimon search for other commits by this committer
Welcome bsd.perl.mk.  Add support for constructs such as USE_PERL5=5.8.0+.
Drop support for antique perl.

Work done by:   gabor
Sponsored by:   Google Summer of Code 2007
Hat:            portmgr
Original commit
Saturday, 19 May 2007
20:32 flz search for other commits by this committer
- Welcome X.org 7.2 \o/.
- Set X11BASE to ${LOCALBASE} for recent ${OSVERSION}.
- Bump PORTREVISION for ports intalling files in ${X11BASE}.
Original commit
Tuesday, 2 May 2006
21:30 garga search for other commits by this committer
Bioperl-run contain modules that provides a PERL interface to various
bioinformatics applications. This allows various applications to be used
with common Bioperl objects.

WWW: http://bioperl.org/

PR:             ports/93674
Submitted by:   Mauricio Herrera Cuadra <mauricio@arareko.net>
Original commit

Number of commits found: 26