Port details on branch 2022Q3 |
- p5-transdecoder Identify candidate coding regions within transcript sequences
- 5.7.1 biology =0 5.7.1Version of this port present on the latest quarterly branch.
- Maintainer: jwb@FreeBSD.org
- Port Added: 2016-03-16 20:12:42
- Last Update: 2023-08-05 20:58:40
- Commit Hash: 3227066
- Also Listed In: perl5
- License: BSD3CLAUSE
- WWW:
- https://transdecoder.github.io/
- Description:
- TransDecoder identifies candidate coding regions within transcript sequences,
such as those generated by de novo RNA-Seq transcript assembly using Trinity,
or constructed based on RNA-Seq alignments to the genome using Tophat and
Cufflinks.
- ¦ ¦ ¦ ¦
- Manual pages:
- FreshPorts has no man page information for this port.
- pkg-plist: as obtained via:
make generate-plist - Dependency lines:
-
- p5-transdecoder>0:biology/p5-transdecoder
- To install the port:
- cd /usr/ports/biology/p5-transdecoder/ && make install clean
- To add the package, run one of these commands:
- pkg install biology/p5-transdecoder
- pkg install p5-transdecoder
NOTE: If this package has multiple flavors (see below), then use one of them instead of the name specified above.- PKGNAME: p5-transdecoder
- Flavors: there is no flavor information for this port.
- distinfo:
- TIMESTAMP = 1691268775
SHA256 (transdecoder-TransDecoder-TransDecoder-v5.7.1_GH0.tar.gz) = 41dd5e95f6ba946ff21340417d867e5e99f123b4035779b25d3cffd20b828a30
SIZE (transdecoder-TransDecoder-TransDecoder-v5.7.1_GH0.tar.gz) = 15749916
Packages (timestamps in pop-ups are UTC):
- Dependencies
- NOTE: FreshPorts displays only information on required and default dependencies. Optional dependencies are not covered.
- Build dependencies:
-
- perl5>=5.34<5.35 : lang/perl5.34
- Runtime dependencies:
-
- cd-hit>=4.6.1 : biology/cd-hit
- p5-URI>0 : net/p5-URI
- perl5>=5.34<5.35 : lang/perl5.34
- There are no ports dependent upon this port
Configuration Options:
- No options to configure
- Options name:
- biology_p5-transdecoder
- USES:
- perl5 shebangfix
- FreshPorts was unable to extract/find any pkg message
- Master Sites:
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