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The cause of the slowdown was a change to the ZFS dataset. In conjunction with the database server, very little caching was being done. This combination resulted in increased disk I/O as the system churned through the database. Details in the blog post which outlines the various things which changed. Many graphs.

non port: biology/pbcopper/Makefile
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Number of commits found: 11

Wed, 11 Dec 2019
[ 17:53 jbeich ] Original commit   Revision:519824
519824 archivers/innoextract/Makefile
519824 archivers/tardy/Makefile
519824 astro/libkgeomap/Makefile
519824 astro/libosmium/Makefile
519824 audio/ardour/Makefile
519824 audio/ardour5/Makefile
519824 audio/clementine-player/Makefile
519824 audio/cpp-xmms2/Makefile
519824 audio/csound/Makefile
519824 audio/faust-lv2/Makefile

(Only the first 10 of 417 ports in this commit are shown above. View all ports for this commit)
devel/boost-*: update to 1.72.0

Changes:	http://www.boost.org/users/history/version_1_72_0.html
PR:		241449
Exp-run by:	antoine
Differential Revision:	https://reviews.freebsd.org/D22136
Sun, 24 Nov 2019
[ 15:53 jwb ] Original commit   Revision:518334
518334 biology/pbbam/Makefile
518334 biology/pbcopper/Makefile
518334 biology/pbseqan/Makefile
518334 biology/unanimity/Makefile
biology/unanimity and dependencies: Flag as no longer open source

PacBio now provides unanimity only as a binary package through bioconda.
See https://github.com/PacificBiosciences/ccs.
Mon, 19 Aug 2019
[ 15:35 jbeich ] Original commit   Revision:509290
509290 archivers/innoextract/Makefile
509290 archivers/tardy/Makefile
509290 astro/libkgeomap/Makefile
509290 astro/libosmium/Makefile
509290 audio/ardour/Makefile
509290 audio/ardour5/Makefile
509290 audio/clementine-player/Makefile
509290 audio/cpp-xmms2/Makefile
509290 audio/csound/Makefile
509290 audio/faust-lv2/Makefile

(Only the first 10 of 412 ports in this commit are shown above. View all ports for this commit)
devel/boost-*: update to 1.71.0

Changes:	http://www.boost.org/users/history/version_1_71_0.html
PR:		238827
Exp-run by:	antoine
Differential Revision:	https://reviews.freebsd.org/D20774
Fri, 26 Jul 2019
[ 20:46 gerald ] Original commit   Revision:507372
507372 Mk/bsd.ruby.mk
507372 accessibility/atkmm/Makefile
507372 accessibility/kmag/Makefile
507372 accessibility/kmousetool/Makefile
507372 accessibility/kmouth/Makefile
507372 accessibility/libqaccessibilityclient/Makefile
507372 accessibility/qt5-speech/Makefile
507372 archivers/R-cran-zip/Makefile
507372 archivers/ark/Makefile
507372 archivers/brotli/Makefile

(Only the first 10 of 3853 ports in this commit are shown above. View all ports for this commit)
Bump PORTREVISION for ports depending on the canonical version of GCC
as defined in Mk/bsd.default-versions.mk which has moved from GCC 8.3
to GCC 9.1 under most circumstances now after revision 507371.

This includes ports
 - with USE_GCC=yes or USE_GCC=any,
 - with USES=fortran,
 - using Mk/bsd.octave.mk which in turn features USES=fortran, and
 - with USES=compiler specifying openmp, nestedfct, c11, c++0x, c++11-lang,
   c++11-lib, c++14-lang, c++17-lang, or gcc-c++11-lib
plus, everything INDEX-11 shows with a dependency on lang/gcc9 now.

PR:		238330
Fri, 12 Apr 2019
[ 06:36 jbeich ] Original commit   Revision:498698
498698 archivers/innoextract/Makefile
498698 archivers/tardy/Makefile
498698 astro/libkgeomap/Makefile
498698 astro/libosmium/Makefile
498698 audio/ardour/Makefile
498698 audio/ardour5/Makefile
498698 audio/clementine-player/Makefile
498698 audio/cpp-xmms2/Makefile
498698 audio/csound/Makefile
498698 audio/faust-lv2/Makefile

(Only the first 10 of 392 ports in this commit are shown above. View all ports for this commit)
devel/boost-*: update to 1.70.0

Changes:	http://www.boost.org/users/history/version_1_70_0.html
PR:		235956
Exp-run by:	antoine
Differential Revision:	https://reviews.freebsd.org/D19303
Tue, 19 Feb 2019
[ 22:20 jwb ] Original commit   Revision:493397
493397 biology/pbcopper/Makefile
493397 biology/pbcopper/distinfo
493397 biology/pbcopper/files/patch-cmake_pbcopper-gitsha1.cmake
493397 biology/pbcopper/files/patch-meson__options.txt
493397 biology/pbcopper/pkg-plist
biology/pbcopper: Upgrade to 0.4.1 release

In preparation for biology/unanimity upgrade
Wed, 12 Dec 2018
[ 01:35 gerald ] Original commit   Revision:487272
487272 Mk/bsd.ruby.mk
487272 accessibility/atkmm/Makefile
487272 accessibility/kmag/Makefile
487272 accessibility/kmousetool/Makefile
487272 accessibility/kmouth/Makefile
487272 accessibility/qt5-speech/Makefile
487272 archivers/R-cran-zip/Makefile
487272 archivers/ark/Makefile
487272 archivers/brotli/Makefile
487272 archivers/c-blosc/Makefile

(Only the first 10 of 3168 ports in this commit are shown above. View all ports for this commit)
Bump PORTREVISION for ports depending on the canonical version of GCC
defined via Mk/bsd.default-versions.mk which has moved from GCC 7.4 t
GCC 8.2 under most circumstances.

This includes ports
 - with USE_GCC=yes or USE_GCC=any,
 - with USES=fortran,
 - using Mk/bsd.octave.mk which in turn features USES=fortran, and
 - with USES=compiler specifying openmp, nestedfct, c11, c++0x, c++11-lang,
   c++11-lib, c++14-lang, c++17-lang, or gcc-c++11-lib
plus, as a double check, everything INDEX-11 showed depending on lang/gcc7.

PR:		231590
[ 00:15 jbeich ] Original commit   Revision:487266
487266 archivers/innoextract/Makefile
487266 archivers/tardy/Makefile
487266 astro/libkgeomap-kde4/Makefile
487266 astro/libkgeomap/Makefile
487266 astro/libosmium/Makefile
487266 audio/ardour/Makefile
487266 audio/ardour5/Makefile
487266 audio/clementine-player/Makefile
487266 audio/cpp-xmms2/Makefile
487266 audio/csound/Makefile

(Only the first 10 of 415 ports in this commit are shown above. View all ports for this commit)
devel/boost-*: update to 1.69.0

Changes:	http://www.boost.org/users/history/version_1_69_0.html
PR:		232525
Exp-run by:	antoine
Differential Revision:	https://reviews.freebsd.org/D17645
Tue, 18 Sep 2018
[ 08:14 linimon ] Original commit   Revision:479990
479990 audio/nuvolaplayer/Makefile
479990 audio/sherlock-lv2/Makefile
479990 biology/pbbam/Makefile
479990 biology/pbcopper/Makefile
479990 biology/unanimity/Makefile
479990 cad/freehdl/Makefile
479990 databases/p5-Tie-LevelDB/Makefile
479990 databases/pointcloud/Makefile
479990 devel/icmake/Makefile
479990 games/atanks/Makefile

(Only the first 10 of 22 ports in this commit are shown above. View all ports for this commit)
More precisely specify USES=compiler to fix build on gcc-based
platforms such as powerpc64.

Tested on powerpc64, amd64.

Approved by:	portmgr (tier-2 blanket)
Thu, 9 Aug 2018
[ 06:58 jbeich ] Original commit   Revision:476723
476723 archivers/innoextract/Makefile
476723 archivers/tardy/Makefile
476723 astro/libkgeomap-kde4/Makefile
476723 astro/libkgeomap/Makefile
476723 astro/libosmium/Makefile
476723 audio/ardour/Makefile
476723 audio/ardour5/Makefile
476723 audio/clementine-player/Makefile
476723 audio/cpp-xmms2/Makefile
476723 audio/csound6/Makefile

(Only the first 10 of 404 ports in this commit are shown above. View all ports for this commit)
devel/boost-*: update to 1.68.0

- Switch to C++14 for libboost_system to support C++14 consumers

Changes:	http://www.boost.org/users/history/version_1_68_0.html
PR:		229569
Exp-run by:	antoine
Differential Revision:	https://reviews.freebsd.org/D16165
Mon, 23 Apr 2018
[ 16:23 jwb ] Original commit   Revision:468101
468101 biology/Makefile
468101 biology/pbcopper
468101 biology/pbcopper/Makefile
468101 biology/pbcopper/distinfo
468101 biology/pbcopper/files
468101 biology/pbcopper/files/patch-cmake_pbcopper-gitsha1.cmake
468101 biology/pbcopper/pkg-descr
468101 biology/pbcopper/pkg-plist
biology/pbcopper: Core C++ library for Pacific Biosciences tools

Approved by:    jrm (mentor)
Differential Revision:  https://reviews.freebsd.org/D15171

Number of commits found: 11

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