| Port details on branch 2022Q3 |
- primer3 Primer3 helps to choose primers for PCR reactions
- 2.3.6 biology
 =0      2.3.6Version of this port present on the latest quarterly branch. - There is no maintainer for this port.
- Any concerns regarding this port should be directed to the FreeBSD Ports mailing list via ports@FreeBSD.org
- Port Added: 2002-09-17 15:31:31
- Last Update: 2023-08-05 18:55:50
- Commit Hash: 16f82a5
- License: GPLv2
- WWW:
- http://www-genome.wi.mit.edu/genome_software/other/primer3.html
- Description:
- "Primer3 is a complete rewrite of the original PRIMER program
(Primer 0.5), written by Steve Lincoln, Mark Daly, and Eric
Lander. See DIFFERENCES FROM EARLIER VERSIONS for a discussion
of how Primer3 differs from its predecessors, Primer 0.5 and
Primer v2.
Primer3 picks primers for PCR reactions, considering as criteria:
o oligonucleotide melting temperature, size, GC content,
and primer-dimer possibilities,
o PCR product size,
o positional constraints within the source sequence, and
o miscellaneous other constraints.
All of these criteria are user-specifiable as constraints, and
some are specifiable as terms in an objective function that
characterizes an optimal primer pair."
- from the README file
  ¦  ¦  ¦  ¦ 
- Manual pages:
- FreshPorts has no man page information for this port.
- pkg-plist: as obtained via:
make generate-plist - Dependency lines:
-
- primer3>0:biology/primer3
- To install the port:
- cd /usr/ports/biology/primer3/ && make install clean
- To add the package, run one of these commands:
- pkg install biology/primer3
- pkg install primer3
NOTE: If this package has multiple flavors (see below), then use one of them instead of the name specified above.- PKGNAME: primer3
- Flavors: there is no flavor information for this port.
- distinfo:
- SHA256 (primer3-src-2.3.6.tar.gz) = 2ff54faf957f0d7e4c79d9536fa1027b028bc5e4c6005f142df42ef85562ecd4
SIZE (primer3-src-2.3.6.tar.gz) = 1667573
Packages (timestamps in pop-ups are UTC):
- Dependencies
- NOTE: FreshPorts displays only information on required and default dependencies. Optional dependencies are not covered.
- Build dependencies:
-
- gmake>=4.3 : devel/gmake
- This port is required by:
- for Build
-
- biology/emboss
Configuration Options:- No options to configure
- Options name:
- biology_primer3
- USES:
- gmake
- FreshPorts was unable to extract/find any pkg message
- Master Sites:
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