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non port: biology/primer3/Makefile

Number of commits found: 26

Saturday, 5 Aug 2023
18:55 Muhammad Moinur Rahman (bofh) search for other commits by this committer
biology/primer3: Fix build with llvm16

Approved by:	portmgr (blanket)
Sponsored by:	The FreeBSD Foundation
commit hash: 16f82a503aae4a5ccde843d9cceb014c8c8ed3ce commit hash: 16f82a503aae4a5ccde843d9cceb014c8c8ed3ce commit hash: 16f82a503aae4a5ccde843d9cceb014c8c8ed3ce commit hash: 16f82a503aae4a5ccde843d9cceb014c8c8ed3ce 16f82a5
Wednesday, 7 Sep 2022
21:10 Stefan E├čer (se) search for other commits by this committer
Add WWW entries to port Makefiles

It has been common practice to have one or more URLs at the end of the
ports' pkg-descr files, one per line and prefixed with "WWW:". These
URLs should point at a project website or other relevant resources.

Access to these URLs required processing of the pkg-descr files, and
they have often become stale over time. If more than one such URL was
present in a pkg-descr file, only the first one was tarnsfered into
the port INDEX, but for many ports only the last line did contain the
port specific URL to further information.

There have been several proposals to make a project URL available as
a macro in the ports' Makefiles, over time.

This commit implements such a proposal and moves one of the WWW: entries
of each pkg-descr file into the respective port's Makefile. A heuristic
attempts to identify the most relevant URL in case there is more than
one WWW: entry in some pkg-descr file. URLs that are not moved into the
Makefile are prefixed with "See also:" instead of "WWW:" in the pkg-descr
files in order to preserve them.

There are 1256 ports that had no WWW: entries in pkg-descr files. These
ports will not be touched in this commit.

The portlint port has been adjusted to expect a WWW entry in each port
Makefile, and to flag any remaining "WWW:" lines in pkg-descr files as
deprecated.

Approved by:		portmgr (tcberner)
commit hash: b7f05445c00f2625aa19b4154ebcbce5ed2daa52 commit hash: b7f05445c00f2625aa19b4154ebcbce5ed2daa52 commit hash: b7f05445c00f2625aa19b4154ebcbce5ed2daa52 commit hash: b7f05445c00f2625aa19b4154ebcbce5ed2daa52 b7f0544
Wednesday, 20 Jul 2022
14:20 Tobias C. Berner (tcberner) search for other commits by this committer
biology: remove 'Created by' lines

A big Thank You to the original contributors of these ports:

  *  Aaron Dalton <aaron@FreeBSD.org>
  *  Akinori MUSHA aka knu <knu@idaemons.org>
  *  Andrey Zakhvatov
  *  Bob Zimmermann <rpz@cse.wustl.edu>
  *  Camson Huynh <chuynh@biolateral.com.au>
  *  Dan Siercks <dsiercks@uwm.edu>
  *  Fernan Aguero <fernan@iib.unsam.edu.ar>
  *  Hannes Hauswedell <h2+fbsdports@fsfe.org>
  *  J. Bacon <jwb@FreeBSD.org>
  *  Jason Bacon <jwb@FreeBSD.org>
  *  Jeremy <karlj000@unbc.ca>
  *  Johann Visagie <johann@egenetics.com>
  *  Johann Visagie <wjv@FreeBSD.org>
  *  Mauricio Herrera Cuadra <mauricio@arareko.net>
  *  Motomichi Matsuzaki <mzaki@biol.s.u-tokyo.ac.jp>
  *  Motomichi Matsuzaki <mzaki@e-mail.ne.jp>
  *  Motomichi Matsuzaki <mzaki@m.u-tokyo.ac.jp>
  *  Motomichi Matsuzaki <mzaki@niid.go.jp>
  *  Po-Chuan Hsieh <sunpoet@FreeBSD.org>
  *  Razi Khaja <razi@genet.sickkids.on.ca>
  *  Reed A. Cartwright <cartwright@asu.edu>
  *  Ryo MIYAMOTO
  *  Ryo MIYAMOTO <rmiya@cc.hirosaki-u.ac.jp>
  *  Sangwoo Shim <sangwoos@gmail.com>
  *  Sunpoet Po-Chuan Hsieh <sunpoet@FreeBSD.org>
  *  Tassilo Philipp <tphilipp@potion-studios.com>
  *  Tony Maher
  *  Tony Maher <tonym@biolateral.com.au>
  *  Wen Heping <wen@FreeBSD.org>
  *  Wen Heping <wenheping@gmail.com>
  *  Yonatan <onatan@gmail.com>
  *  Yuri Victorovich <yuri@rawbw.com>
  *  ballen
  *  barnhart@genetics.wustl.edu
  *  camson@bilateral.com.au
  *  chuynh@biolateral.com.au
  *  dbader@eece.unm.edu
  *  frankch@waru.life.nthu.edu.tw
  *  h2
  *  lentferj
  *  maho@FreeBSD.org
  *  mzaki@biol.s.u-tokyo.ac.jp
  *  tonym
  *  wen@FreeBSD.org

With hat:	portmgr
commit hash: 37526bbd4e50616d87f70e1c788ae4895d88d671 commit hash: 37526bbd4e50616d87f70e1c788ae4895d88d671 commit hash: 37526bbd4e50616d87f70e1c788ae4895d88d671 commit hash: 37526bbd4e50616d87f70e1c788ae4895d88d671 37526bb
Tuesday, 6 Apr 2021
14:31 Mathieu Arnold (mat) search for other commits by this committer
Remove # $FreeBSD$ from Makefiles.
commit hash: 305f148f482daf30dcf728039d03d019f88344eb commit hash: 305f148f482daf30dcf728039d03d019f88344eb commit hash: 305f148f482daf30dcf728039d03d019f88344eb commit hash: 305f148f482daf30dcf728039d03d019f88344eb 305f148
Tuesday, 20 May 2014
19:32 tijl search for other commits by this committer
Quote ${CC} and similar variables in MAKE_ARGS.

Reported by:	Dominic Fandrey <kamikaze@bsdforen.de>
Original commitRevision:354670 
Sunday, 6 Apr 2014
03:56 wen search for other commits by this committer
- Update to 2.3.6
- Reset maintainer to ports@
Original commitRevision:350288 
Friday, 14 Mar 2014
12:35 ehaupt search for other commits by this committer
Support staging
Original commitRevision:348218 
Friday, 20 Sep 2013
15:55 bapt search for other commits by this committer
Add NO_STAGE all over the place in preparation for the staging support (cat:
biology)
Original commitRevision:327709 
Wednesday, 28 Aug 2013
06:04 bapt search for other commits by this committer
Make sure to respect CC and CXX, this fixes the build on head without gcc
Original commitRevision:325508 
Tuesday, 20 Aug 2013
14:11 wen search for other commits by this committer
- Update to 2.3.5
- Add LICENSE
- Remove pkg-message since license changed upstream
- Do not install test files as example
Original commitRevision:325050 
Monday, 1 Oct 2012
14:55 wen search for other commits by this committer
- Take maintainership
Original commitRevision:305131 
14:45 tabthorpe search for other commits by this committer
- Reassign to the heap at maintainer's request
Original commitRevision:305130 
Friday, 27 Jan 2012
17:41 miwi search for other commits by this committer
- Respect CC

PR:             163172
Submitted by:   Jan Beich <jbeich@tormail.net>
Approved by:    maintainer timeout
Original commit
Wednesday, 29 Dec 2010
20:04 pgollucci search for other commits by this committer
- DISTNAME= ${PORTNAME}-${PORTVERSION} is the default and not needed.

PR:             ports/153292
Submitted by:   myself (pgollucci)
Tested by:      -exp run by pav
Approved by:    portmgr (pav)
Original commit
Friday, 18 Dec 2009
02:55 wen search for other commits by this committer
- Update to 1.1.4

Submitted by:   Wen Heping (myself)
Approved by:    maintainer (via Email)
Original commit
Friday, 4 Apr 2008
20:46 pav search for other commits by this committer
- Update to 1.1.3

PR:             ports/122374
Submitted by:   Wen heping <wenheping@gmail.com>
Patch revised:  Fernan Aguero <fernan@iib.unsam.edu.ar> (maintainer)
Original commit
Friday, 29 Dec 2006
23:40 miwi search for other commits by this committer
- Update to 1.0.1
- Update MASTER_SITES
- Pass maintainership to submitter

PR:             ports/107246
Submitted by:   Fernan Aguero<fernan@iib.unsam.edu.ar> (maintainer)
Original commit
Tuesday, 26 Dec 2006
12:46 linimon search for other commits by this committer
Reset tonymaher@optusnet.com.au due to maintainer-timeouts and no response
to email.

Hat:            portmgr
Original commit
Wednesday, 3 May 2006
23:26 edwin search for other commits by this committer
Remove USE_REINPLACE from all categories starting with B
Original commit
Monday, 9 Jan 2006
03:25 edwin search for other commits by this committer
Fix maintainer address

    From: Tony Maher <anthony.maher@uts.edu.au>
    To: Edwin Groothuis <edwin@FreeBSD.org>
    Subject: Re: ports/91537: maths/xgobi - download site moved/maintainer
addressupdate

    Actually I need  modify all my ports to use OptusNet rather than
    Biolateral.  Is there an easy way to do this or should I submit a
    separate 1-line patch and PR for each port?

    biology/crimap
    biology/dna-qc
    biology/flip
    biology/primer3
    biology/seqio
    biology/wise
    math/xgobi
    net/generic-nqs

Submitted by:   Tony Maher <anthony.maher@uts.edu.au>
Original commit
Monday, 13 Jun 2005
04:31 pat search for other commits by this committer
- Update to 1.0.0
- Make DATADIR/EXAMPLESDIR/DOCSDIR safe
- Don't hardcode ${CPIO}

PR:             ports/82154
Submitted by:   George Hartzell <hartzell@alerce.com>
Approved by:    maintainer
Original commit
Friday, 27 Feb 2004
22:20 krion search for other commits by this committer
- Fix MASTER_SITES

PR:             ports/63469
Submitted by:   maintainer
Original commit
Saturday, 20 Dec 2003
12:20 krion search for other commits by this committer
- Fix MASTER_SITES

PR:             60417
Submitted by:   maintainer
Original commit
Friday, 21 Feb 2003
11:01 knu search for other commits by this committer
De-pkg-comment.
Original commit
Thursday, 7 Nov 2002
13:45 edwin search for other commits by this committer
Updated to fix problems as stated in PR ports/42915

PR:             ports/42915
Submitted by:   Tony Maher <tonym@biolateral.com.au>
Original commit
Tuesday, 17 Sep 2002
15:31 ijliao search for other commits by this committer
add primer3 0.9
Primer3 helps to choose primers for PCR reactions

PR:             35298
Submitted by:   Tony Maher <tonym@biolateral.com.au>
Original commit

Number of commits found: 26