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NOTE: There is a known problem on production with searching pkg-plist - it returns no results. This problem is not present on stage.freshports.org
non port: biology/py-biom-format/Makefile
SVNWeb

Number of commits found: 21

Wed, 7 Sep 2022
[ 21:10 Stefan E├čer (se) search for other commits by this committer ]    commit hash:b7f05445c00f2625aa19b4154ebcbce5ed2daa52  commit hash:b7f05445c00f2625aa19b4154ebcbce5ed2daa52  commit hash:b7f05445c00f2625aa19b4154ebcbce5ed2daa52  b7f0544  (Only the first 10 of 27931 ports in this commit are shown above. View all ports for this commit)
Add WWW entries to port Makefiles

It has been common practice to have one or more URLs at the end of the
ports' pkg-descr files, one per line and prefixed with "WWW:". These
URLs should point at a project website or other relevant resources.

Access to these URLs required processing of the pkg-descr files, and
they have often become stale over time. If more than one such URL was
present in a pkg-descr file, only the first one was tarnsfered into
the port INDEX, but for many ports only the last line did contain the
port specific URL to further information.

There have been several proposals to make a project URL available as
a macro in the ports' Makefiles, over time.
(Only the first 15 lines of the commit message are shown above View all of this commit message)
Wed, 7 Apr 2021
[ 08:09 Mathieu Arnold (mat) search for other commits by this committer ]    commit hash:cf118ccf875508b9a1c570044c93cfcc82bd455c  commit hash:cf118ccf875508b9a1c570044c93cfcc82bd455c  commit hash:cf118ccf875508b9a1c570044c93cfcc82bd455c  cf118cc  (Only the first 10 of 8873 ports in this commit are shown above. View all ports for this commit)
One more small cleanup, forgotten yesterday.
Reported by:	lwhsu
Tue, 6 Apr 2021
[ 14:31 Mathieu Arnold (mat) search for other commits by this committer ]    commit hash:305f148f482daf30dcf728039d03d019f88344eb  commit hash:305f148f482daf30dcf728039d03d019f88344eb  commit hash:305f148f482daf30dcf728039d03d019f88344eb  305f148  (Only the first 10 of 29333 ports in this commit are shown above. View all ports for this commit)
Remove # $FreeBSD$ from Makefiles.
Sat, 30 Jan 2021
[ 13:29 sunpoet search for other commits by this committer ] Original commit   Revision:563407 (Only the first 10 of 62 ports in this commit are shown above. View all ports for this commit)
Update USES=python: math/py-pandas 1.2.0 requires Python 3.7+

PR:		250103
Mon, 11 Jan 2021
[ 05:28 jrm search for other commits by this committer ] Original commit   Revision:561187
biology/py-biom-format: Update to version 2.1.10

https://github.com/biocore/biom-format/releases/tag/2.1.10
Sat, 26 Sep 2020
[ 09:10 jrm search for other commits by this committer ] Original commit   Revision:550141
biology/py-biom-format: Fix fetch and relax scipy requirement

- The broken fetch was due to a commit error.

- The relaxing of the scipy constraint is temporary until scipy can be
  updated.
Fri, 25 Sep 2020
[ 01:03 jrm search for other commits by this committer ] Original commit   Revision:549977
biology/py-biom-format: Update to version 2.1.8

Upstream changes:
https://github.com/biocore/biom-format/releases/tag/2.1.8
Sun, 23 Feb 2020
[ 15:25 antoine search for other commits by this committer ] Original commit   Revision:526925 (Only the first 10 of 257 ports in this commit are shown above. View all ports for this commit)
Deprecate a few ports

With hat:	portmgr
Fri, 8 Nov 2019
[ 12:12 amdmi3 search for other commits by this committer ] Original commit   Revision:517051
- Limit python version (does not build with 3.7+)

Approved by:	portmgr blanket
Fri, 26 Jul 2019
[ 20:46 gerald search for other commits by this committer ] Original commit   Revision:507372 (Only the first 10 of 3853 ports in this commit are shown above. View all ports for this commit)
Bump PORTREVISION for ports depending on the canonical version of GCC
as defined in Mk/bsd.default-versions.mk which has moved from GCC 8.3
to GCC 9.1 under most circumstances now after revision 507371.

This includes ports
 - with USE_GCC=yes or USE_GCC=any,
 - with USES=fortran,
 - using Mk/bsd.octave.mk which in turn features USES=fortran, and
 - with USES=compiler specifying openmp, nestedfct, c11, c++0x, c++11-lang,
   c++11-lib, c++14-lang, c++17-lang, or gcc-c++11-lib
plus, everything INDEX-11 shows with a dependency on lang/gcc9 now.

PR:		238330
Wed, 10 Apr 2019
[ 06:18 antoine search for other commits by this committer ] Original commit   Revision:498530 (Only the first 10 of 399 ports in this commit are shown above. View all ports for this commit)
Bump a few PORTREVISIONs after r498529

With hat:	portmgr
Wed, 12 Dec 2018
[ 01:35 gerald search for other commits by this committer ] Original commit   Revision:487272 (Only the first 10 of 3168 ports in this commit are shown above. View all ports for this commit)
Bump PORTREVISION for ports depending on the canonical version of GCC
defined via Mk/bsd.default-versions.mk which has moved from GCC 7.4 t
GCC 8.2 under most circumstances.

This includes ports
 - with USE_GCC=yes or USE_GCC=any,
 - with USES=fortran,
 - using Mk/bsd.octave.mk which in turn features USES=fortran, and
 - with USES=compiler specifying openmp, nestedfct, c11, c++0x, c++11-lang,
   c++11-lib, c++14-lang, c++17-lang, or gcc-c++11-lib
plus, as a double check, everything INDEX-11 showed depending on lang/gcc7.

PR:		231590
Sat, 6 Oct 2018
[ 15:28 jrm search for other commits by this committer ] Original commit   Revision:481369
biology/py-biom-format: Update to version 2.1.7

Reported by:	portscout
Wed, 20 Jun 2018
[ 17:05 mat search for other commits by this committer ] Original commit   Revision:472884 (Only the first 10 of 1617 ports in this commit are shown above. View all ports for this commit)
Use PY_FLAVOR for dependencies.

FLAVOR is the current port's flavor, it should not be used outside of
this scope.

Sponsored by:	Absolight
Sat, 10 Mar 2018
[ 17:46 gerald search for other commits by this committer ] Original commit   Revision:464084 (Only the first 10 of 1104 ports in this commit are shown above. View all ports for this commit)
Bump PORTREVISIONs of all users of math/mpc that we just updated to
version 1.1.0 (via revision 464079).
Sun, 10 Dec 2017
[ 03:33 jrm search for other commits by this committer ] Original commit   Revision:455879
biology/py-biom-format: Add required dependency on math/py-pandas and do
not install tests.
Thu, 30 Nov 2017
[ 15:50 mat search for other commits by this committer ] Original commit   Revision:455210 (Only the first 10 of 2423 ports in this commit are shown above. View all ports for this commit)
Convert Python ports to FLAVORS.

  Ports using USE_PYTHON=distutils are now flavored.  They will
  automatically get flavors (py27, py34, py35, py36) depending on what
  versions they support.

  There is also a USE_PYTHON=flavors for ports that do not use distutils
  but need FLAVORS to be set.  A USE_PYTHON=noflavors can be set if
  using distutils but flavors are not wanted.

  A new USE_PYTHON=optsuffix that will add PYTHON_PKGNAMESUFFIX has been
  added to cope with Python ports that did not have the Python
  PKGNAMEPREFIX but are flavored.

  USES=python now also exports a PY_FLAVOR variable that contains the
(Only the first 15 lines of the commit message are shown above View all of this commit message)
Sat, 29 Apr 2017
[ 13:59 jrm search for other commits by this committer ] Original commit   Revision:439751
biology/py-biom-format: Update to version 2.1.6

Upstream changes: https://github.com/biocore/biom-format/releases/tag/2.1.6

Approved by:	swills (mentor, implicit)
Fri, 23 Sep 2016
[ 21:42 jrm search for other commits by this committer ] Original commit   Revision:422697 (Only the first 10 of 16 ports in this commit are shown above. View all ports for this commit)
Update email address to jrm@FreeBSD.org for ports that I maintain

Reviewed by:	mat, swills (mentor)
Approved by:	swills (mentor)
Differential Revision:	https://reviews.freebsd.org/D7995
Sat, 11 Jun 2016
[ 09:25 olivierd search for other commits by this committer ] Original commit   Revision:416710
- Fix run-time dependency issues
- Bump PORTREVISION

PR:		209767
Submitted by:	Joseph Mingrone (maintainer)
Mon, 9 May 2016
[ 16:37 olivierd search for other commits by this committer ] Original commit   Revision:414865
The BIOM file format (canonically pronounced biome) is designed to be a
general-use format for representing biological sample by observation contingency
tables. BIOM is a recognized standard for the Earth Microbiome Project and is a
Genomics Standards Consortium supported project.

The BIOM format is designed for general use in broad areas of comparative
-omics. For example, in marker-gene surveys, the primary use of this format is
to represent OTU tables: the observations in this case are OTUs and the matrix
contains counts corresponding to the number of times each OTU is observed in
each sample. With respect to metagenome data, this format would be used to
represent metagenome tables: the observations in this case might correspond to
SEED subsystems, and the matrix would contain counts corresponding to the number
of times each subsystem is observed in each metagenome. Similarly, with respect
to genome data, this format may be used to represent a set of genomes: the
observations in this case again might correspond to SEED subsystems, and the
counts would correspond to the number of times each subsystem is observed in
each genome.

WWW: http://biom-format.org/

PR:		209193
Submitted by:	Joseph Mingrone

Number of commits found: 21