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Two new features

Two two features were added on 2020-05-30:
  1. Repology links - each port now has a link to repology.org. See issue 148 for details.
  2. Ports I maintain report - port maintainers can now subscribe to a daily report of commits to the ports they maintain. See Watch ports I maintain at Report Subscriptions. Details at issue 138
non port: biology/py-biom-format/Makefile
SVNWeb

Number of commits found XX: 14

Sun, 23 Feb 2020
[ 15:25 antoine ] Original commit   Revision:526925
526925 archivers/py-backports.lzma/Makefile
526925 archivers/py-bup/Makefile
526925 archivers/py-librtfcomp/Makefile
526925 audio/blop-lv2/Makefile
526925 audio/bs2b-lv2/Makefile
526925 audio/guitarix-lv2/Makefile
526925 audio/py-cddb/Makefile
526925 audio/py-gmusicproxy/Makefile
526925 audio/py-hsaudiotag/Makefile
526925 audio/py-openal/Makefile

(Only the first 10 of 257 ports in this commit are shown above. View all ports for this commit)
Deprecate a few ports

With hat:	portmgr
Fri, 8 Nov 2019
[ 12:12 amdmi3 ] Original commit   Revision:517051
517051 biology/py-biom-format/Makefile
- Limit python version (does not build with 3.7+)

Approved by:	portmgr blanket
Fri, 26 Jul 2019
[ 20:46 gerald ] Original commit   Revision:507372
507372 Mk/bsd.ruby.mk
507372 accessibility/atkmm/Makefile
507372 accessibility/kmag/Makefile
507372 accessibility/kmousetool/Makefile
507372 accessibility/kmouth/Makefile
507372 accessibility/libqaccessibilityclient/Makefile
507372 accessibility/qt5-speech/Makefile
507372 archivers/R-cran-zip/Makefile
507372 archivers/ark/Makefile
507372 archivers/brotli/Makefile

(Only the first 10 of 3853 ports in this commit are shown above. View all ports for this commit)
Bump PORTREVISION for ports depending on the canonical version of GCC
as defined in Mk/bsd.default-versions.mk which has moved from GCC 8.3
to GCC 9.1 under most circumstances now after revision 507371.

This includes ports
 - with USE_GCC=yes or USE_GCC=any,
 - with USES=fortran,
 - using Mk/bsd.octave.mk which in turn features USES=fortran, and
 - with USES=compiler specifying openmp, nestedfct, c11, c++0x, c++11-lang,
   c++11-lib, c++14-lang, c++17-lang, or gcc-c++11-lib
plus, everything INDEX-11 shows with a dependency on lang/gcc9 now.

PR:		238330
Wed, 10 Apr 2019
[ 06:18 antoine ] Original commit   Revision:498530
498530 archivers/rpm4/Makefile
498530 astro/geographiclib/Makefile
498530 astro/weather/Makefile
498530 audio/beets/Makefile
498530 audio/ecasound/Makefile
498530 audio/mma/Makefile
498530 audio/mps/Makefile
498530 audio/py-aubio/Makefile
498530 audio/py-fmoo-audiotools/Makefile
498530 audio/py-mutagen/Makefile

(Only the first 10 of 399 ports in this commit are shown above. View all ports for this commit)
Bump a few PORTREVISIONs after r498529

With hat:	portmgr
Wed, 12 Dec 2018
[ 01:35 gerald ] Original commit   Revision:487272
487272 Mk/bsd.ruby.mk
487272 accessibility/atkmm/Makefile
487272 accessibility/kmag/Makefile
487272 accessibility/kmousetool/Makefile
487272 accessibility/kmouth/Makefile
487272 accessibility/qt5-speech/Makefile
487272 archivers/R-cran-zip/Makefile
487272 archivers/ark/Makefile
487272 archivers/brotli/Makefile
487272 archivers/c-blosc/Makefile

(Only the first 10 of 3168 ports in this commit are shown above. View all ports for this commit)
Bump PORTREVISION for ports depending on the canonical version of GCC
defined via Mk/bsd.default-versions.mk which has moved from GCC 7.4 t
GCC 8.2 under most circumstances.

This includes ports
 - with USE_GCC=yes or USE_GCC=any,
 - with USES=fortran,
 - using Mk/bsd.octave.mk which in turn features USES=fortran, and
 - with USES=compiler specifying openmp, nestedfct, c11, c++0x, c++11-lang,
   c++11-lib, c++14-lang, c++17-lang, or gcc-c++11-lib
plus, as a double check, everything INDEX-11 showed depending on lang/gcc7.

PR:		231590
Sat, 6 Oct 2018
[ 15:28 jrm ] Original commit   Revision:481369
481369 biology/py-biom-format/Makefile
481369 biology/py-biom-format/distinfo
biology/py-biom-format: Update to version 2.1.7

Reported by:	portscout
Wed, 20 Jun 2018
[ 17:05 mat ] Original commit   Revision:472884
472884 accessibility/speech-dispatcher/Makefile
472884 archivers/py-attic/Makefile
472884 archivers/py-libarchive-c/Makefile
472884 archivers/py-lz4/Makefile
472884 archivers/py-zstandard/Makefile
472884 astro/gpsd/Makefile
472884 astro/py-RO/Makefile
472884 astro/py-aipy/Makefile
472884 astro/py-astLib/Makefile
472884 astro/py-horoscopegenerator/Makefile

(Only the first 10 of 1617 ports in this commit are shown above. View all ports for this commit)
Use PY_FLAVOR for dependencies.

FLAVOR is the current port's flavor, it should not be used outside of
this scope.

Sponsored by:	Absolight
Sat, 10 Mar 2018
[ 17:46 gerald ] Original commit   Revision:464084
464084 archivers/pxz/Makefile
464084 archivers/zip-ada/Makefile
464084 astro/R-cran-maptools/Makefile
464084 astro/astrometry/Makefile
464084 astro/kstars-kde4/Makefile
464084 astro/nightfall/Makefile
464084 astro/py-RO/Makefile
464084 astro/py-aipy/Makefile
464084 astro/py-astLib/Makefile
464084 astro/py-astropy/Makefile

(Only the first 10 of 1104 ports in this commit are shown above. View all ports for this commit)
Bump PORTREVISIONs of all users of math/mpc that we just updated to
version 1.1.0 (via revision 464079).
Sun, 10 Dec 2017
[ 03:33 jrm ] Original commit   Revision:455879
455879 biology/py-biom-format/Makefile
biology/py-biom-format: Add required dependency on math/py-pandas and do
not install tests.
Thu, 30 Nov 2017
[ 15:50 mat ] Original commit   Revision:455210
455210 CHANGES
455210 MOVED
455210 Mk/Uses/gnome.mk
455210 Mk/Uses/pyqt.mk
455210 Mk/Uses/python.mk
455210 UPDATING
455210 accessibility/Makefile
455210 accessibility/accerciser/Makefile
455210 accessibility/caribou/Makefile
455210 accessibility/orca/Makefile

(Only the first 10 of 2423 ports in this commit are shown above. View all ports for this commit)
Convert Python ports to FLAVORS.

  Ports using USE_PYTHON=distutils are now flavored.  They will
  automatically get flavors (py27, py34, py35, py36) depending on what
  versions they support.

  There is also a USE_PYTHON=flavors for ports that do not use distutils
  but need FLAVORS to be set.  A USE_PYTHON=noflavors can be set if
  using distutils but flavors are not wanted.

  A new USE_PYTHON=optsuffix that will add PYTHON_PKGNAMESUFFIX has been
  added to cope with Python ports that did not have the Python
  PKGNAMEPREFIX but are flavored.

  USES=python now also exports a PY_FLAVOR variable that contains the
(Only the first 15 lines of the commit message are shown above View all of this commit message)
Sat, 29 Apr 2017
[ 13:59 jrm ] Original commit   Revision:439751
439751 biology/py-biom-format/Makefile
439751 biology/py-biom-format/distinfo
biology/py-biom-format: Update to version 2.1.6

Upstream changes: https://github.com/biocore/biom-format/releases/tag/2.1.6

Approved by:	swills (mentor, implicit)
Fri, 23 Sep 2016
[ 21:42 jrm ] Original commit   Revision:422697
422697 biology/diamond/Makefile
422697 biology/paml/Makefile
422697 biology/py-biom-format/Makefile
422697 databases/py-psycopg2cffi/Makefile
422697 deskutils/clipit/Makefile
422697 devel/py-pyqi/Makefile
422697 devel/py-simpleeval/Makefile
422697 mail/getmail/Makefile
422697 math/R/Makefile
422697 print/foomatic-filters/Makefile

(Only the first 10 of 16 ports in this commit are shown above. View all ports for this commit)
Update email address to jrm@FreeBSD.org for ports that I maintain

Reviewed by:	mat, swills (mentor)
Approved by:	swills (mentor)
Differential Revision:	https://reviews.freebsd.org/D7995
Sat, 11 Jun 2016
[ 09:25 olivierd ] Original commit   Revision:416710
416710 biology/py-biom-format/Makefile
- Fix run-time dependency issues
- Bump PORTREVISION

PR:		209767
Submitted by:	Joseph Mingrone (maintainer)
Mon, 9 May 2016
[ 16:37 olivierd ] Original commit   Revision:414865
414865 biology/Makefile
414865 biology/py-biom-format
414865 biology/py-biom-format/Makefile
414865 biology/py-biom-format/distinfo
414865 biology/py-biom-format/pkg-descr
The BIOM file format (canonically pronounced biome) is designed to be a
general-use format for representing biological sample by observation contingency
tables. BIOM is a recognized standard for the Earth Microbiome Project and is a
Genomics Standards Consortium supported project.

The BIOM format is designed for general use in broad areas of comparative
-omics. For example, in marker-gene surveys, the primary use of this format is
to represent OTU tables: the observations in this case are OTUs and the matrix
contains counts corresponding to the number of times each OTU is observed in
each sample. With respect to metagenome data, this format would be used to
represent metagenome tables: the observations in this case might correspond to
SEED subsystems, and the matrix would contain counts corresponding to the number
of times each subsystem is observed in each metagenome. Similarly, with respect
to genome data, this format may be used to represent a set of genomes: the
observations in this case again might correspond to SEED subsystems, and the
counts would correspond to the number of times each subsystem is observed in
each genome.

WWW: http://biom-format.org/

PR:		209193
Submitted by:	Joseph Mingrone

Number of commits found XX: 14

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