| non port: biology/py-biom-format/Makefile |
|
SVNWeb
|
Number of commits found: 24 |
|
Tue, 27 Jun 2023
|
[ 19:34 Rene Ladan (rene)  ]    3d9a815 (Only the first 10 of 4481 ports in this commit are shown above.  )
all: remove explicit versions in USES=python for "3.x+"
The logic in USES=python will automatically convert this to 3.8+ by
itself.
Adjust two ports that only had Python 3.7 mentioned but build fine
on Python 3.8 too.
finance/quickfix: mark BROKEN with PYTHON
libtool: compile: c++ -DHAVE_CONFIG_H -I. -I../.. -I -I. -I.. -I../.. -I../C++
-DLIBICONV_PLUG -DPYTHON_MAJOR_VERSION=3 -Wno-unused-variable
-Wno-maybe-uninitialized -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong
-fno-strict-aliasing -DLIBICONV_PLUG -Wall -ansi
-Wno-unused-command-line-argument -Wpointer-arith -Wwrite-strings
-Wno-overloaded-virtual -Wno-deprecated-declarations -Wno-deprecated -std=c++0x
-MT _quickfix_la-QuickfixPython.lo -MD -MP -MF
.deps/_quickfix_la-QuickfixPython.Tpo -c QuickfixPython.cpp -fPIC -DPIC -o
.libs/_quickfix_la-QuickfixPython.o
warning: unknown warning option '-Wno-maybe-uninitialized'; did you mean
'-Wno-uninitialized'? [-Wunknown-warning-option]
QuickfixPython.cpp:175:11: fatal error: 'Python.h' file not found
^~~~~~~~~~
1 warning and 1 error generated.
Reviewed by: portmgr, vishwin, yuri
Differential Revision: <https://reviews.freebsd.org/D40568>
|
|
Sun, 23 Apr 2023
|
[ 09:09 Gerald Pfeifer (gerald) ] 8d3e020 (Only the first 10 of 2091 ports in this commit are shown above. )
*: Bump PORTREVISIONs for math/mpc update to 1.3.1
|
|
Wed, 11 Jan 2023
|
[ 15:58 Dmitry Marakasov (amdmi3) ] 77d6847 (Only the first 10 of 3335 ports in this commit are shown above. )
*/*: rename CHEESESHOP to PYPI in MASTER_SITES
PR: 267994
Differential revision: D37518
Approved by: bapt
|
|
Wed, 7 Sep 2022
|
[ 21:10 Stefan Eßer (se) ] b7f0544 (Only the first 10 of 27931 ports in this commit are shown above. )
Add WWW entries to port Makefiles
It has been common practice to have one or more URLs at the end of the
ports' pkg-descr files, one per line and prefixed with "WWW:". These
URLs should point at a project website or other relevant resources.
Access to these URLs required processing of the pkg-descr files, and
they have often become stale over time. If more than one such URL was
present in a pkg-descr file, only the first one was tarnsfered into
the port INDEX, but for many ports only the last line did contain the
port specific URL to further information.
There have been several proposals to make a project URL available as
a macro in the ports' Makefiles, over time.
(Only the first 15 lines of the commit message are shown above )
|
|
Wed, 7 Apr 2021
|
[ 08:09 Mathieu Arnold (mat) ] cf118cc (Only the first 10 of 8873 ports in this commit are shown above. )
One more small cleanup, forgotten yesterday.
Reported by: lwhsu
|
|
Tue, 6 Apr 2021
|
[ 14:31 Mathieu Arnold (mat) ] 305f148 (Only the first 10 of 29333 ports in this commit are shown above. )
Remove # $FreeBSD$ from Makefiles.
|
|
Sat, 30 Jan 2021
|
[ 13:29 sunpoet ]   (Only the first 10 of 62 ports in this commit are shown above. )
Update USES=python: math/py-pandas 1.2.0 requires Python 3.7+
PR: 250103
|
|
Mon, 11 Jan 2021
|
[ 05:28 jrm ]
biology/py-biom-format: Update to version 2.1.10
https://github.com/biocore/biom-format/releases/tag/2.1.10
|
|
Sat, 26 Sep 2020
|
[ 09:10 jrm ]
biology/py-biom-format: Fix fetch and relax scipy requirement
- The broken fetch was due to a commit error.
- The relaxing of the scipy constraint is temporary until scipy can be
updated.
|
|
Fri, 25 Sep 2020
|
[ 01:03 jrm ]
biology/py-biom-format: Update to version 2.1.8
Upstream changes:
https://github.com/biocore/biom-format/releases/tag/2.1.8
|
|
Sun, 23 Feb 2020
|
[ 15:25 antoine ] (Only the first 10 of 257 ports in this commit are shown above. )
Deprecate a few ports
With hat: portmgr
|
|
Fri, 8 Nov 2019
|
[ 12:12 amdmi3 ]
- Limit python version (does not build with 3.7+)
Approved by: portmgr blanket
|
|
Fri, 26 Jul 2019
|
[ 20:46 gerald ] (Only the first 10 of 3853 ports in this commit are shown above. )
Bump PORTREVISION for ports depending on the canonical version of GCC
as defined in Mk/bsd.default-versions.mk which has moved from GCC 8.3
to GCC 9.1 under most circumstances now after revision 507371.
This includes ports
- with USE_GCC=yes or USE_GCC=any,
- with USES=fortran,
- using Mk/bsd.octave.mk which in turn features USES=fortran, and
- with USES=compiler specifying openmp, nestedfct, c11, c++0x, c++11-lang,
c++11-lib, c++14-lang, c++17-lang, or gcc-c++11-lib
plus, everything INDEX-11 shows with a dependency on lang/gcc9 now.
PR: 238330
|
|
Wed, 10 Apr 2019
|
[ 06:18 antoine ] (Only the first 10 of 399 ports in this commit are shown above. )
Bump a few PORTREVISIONs after r498529
With hat: portmgr
|
|
Wed, 12 Dec 2018
|
[ 01:35 gerald ] (Only the first 10 of 3168 ports in this commit are shown above. )
Bump PORTREVISION for ports depending on the canonical version of GCC
defined via Mk/bsd.default-versions.mk which has moved from GCC 7.4 t
GCC 8.2 under most circumstances.
This includes ports
- with USE_GCC=yes or USE_GCC=any,
- with USES=fortran,
- using Mk/bsd.octave.mk which in turn features USES=fortran, and
- with USES=compiler specifying openmp, nestedfct, c11, c++0x, c++11-lang,
c++11-lib, c++14-lang, c++17-lang, or gcc-c++11-lib
plus, as a double check, everything INDEX-11 showed depending on lang/gcc7.
PR: 231590
|
|
Sat, 6 Oct 2018
|
[ 15:28 jrm ]
biology/py-biom-format: Update to version 2.1.7
Reported by: portscout
|
|
Wed, 20 Jun 2018
|
[ 17:05 mat ] (Only the first 10 of 1617 ports in this commit are shown above. )
Use PY_FLAVOR for dependencies.
FLAVOR is the current port's flavor, it should not be used outside of
this scope.
Sponsored by: Absolight
|
|
Sat, 10 Mar 2018
|
[ 17:46 gerald ] (Only the first 10 of 1104 ports in this commit are shown above. )
Bump PORTREVISIONs of all users of math/mpc that we just updated to
version 1.1.0 (via revision 464079).
|
|
Sun, 10 Dec 2017
|
[ 03:33 jrm ]
biology/py-biom-format: Add required dependency on math/py-pandas and do
not install tests.
|
|
Thu, 30 Nov 2017
|
[ 15:50 mat ] (Only the first 10 of 2423 ports in this commit are shown above. )
Convert Python ports to FLAVORS.
Ports using USE_PYTHON=distutils are now flavored. They will
automatically get flavors (py27, py34, py35, py36) depending on what
versions they support.
There is also a USE_PYTHON=flavors for ports that do not use distutils
but need FLAVORS to be set. A USE_PYTHON=noflavors can be set if
using distutils but flavors are not wanted.
A new USE_PYTHON=optsuffix that will add PYTHON_PKGNAMESUFFIX has been
added to cope with Python ports that did not have the Python
PKGNAMEPREFIX but are flavored.
USES=python now also exports a PY_FLAVOR variable that contains the (Only the first 15 lines of the commit message are shown above )
|
|
Sat, 29 Apr 2017
|
[ 13:59 jrm ]
biology/py-biom-format: Update to version 2.1.6
Upstream changes: https://github.com/biocore/biom-format/releases/tag/2.1.6
Approved by: swills (mentor, implicit)
|
|
Fri, 23 Sep 2016
|
[ 21:42 jrm ] (Only the first 10 of 16 ports in this commit are shown above. )
Update email address to jrm@FreeBSD.org for ports that I maintain
Reviewed by: mat, swills (mentor)
Approved by: swills (mentor)
Differential Revision: https://reviews.freebsd.org/D7995
|
|
Sat, 11 Jun 2016
|
[ 09:25 olivierd ]
- Fix run-time dependency issues
- Bump PORTREVISION
PR: 209767
Submitted by: Joseph Mingrone (maintainer)
|
|
Mon, 9 May 2016
|
[ 16:37 olivierd ]
The BIOM file format (canonically pronounced biome) is designed to be a
general-use format for representing biological sample by observation contingency
tables. BIOM is a recognized standard for the Earth Microbiome Project and is a
Genomics Standards Consortium supported project.
The BIOM format is designed for general use in broad areas of comparative
-omics. For example, in marker-gene surveys, the primary use of this format is
to represent OTU tables: the observations in this case are OTUs and the matrix
contains counts corresponding to the number of times each OTU is observed in
each sample. With respect to metagenome data, this format would be used to
represent metagenome tables: the observations in this case might correspond to
SEED subsystems, and the matrix would contain counts corresponding to the number
of times each subsystem is observed in each metagenome. Similarly, with respect
to genome data, this format may be used to represent a set of genomes: the
observations in this case again might correspond to SEED subsystems, and the
counts would correspond to the number of times each subsystem is observed in
each genome.
WWW: http://biom-format.org/
PR: 209193
Submitted by: Joseph Mingrone
|
Number of commits found: 24 |
As an Amazon Associate I earn from qualifying purchases.