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non port: biology/py-biom-format/distinfo
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Number of commits found: 6

Mon, 11 Jan 2021
[ 05:28 jrm search for other commits by this committer ] Original commit   Revision:561187
biology/py-biom-format: Update to version 2.1.10

https://github.com/biocore/biom-format/releases/tag/2.1.10
Sat, 26 Sep 2020
[ 09:10 jrm search for other commits by this committer ] Original commit   Revision:550141
biology/py-biom-format: Fix fetch and relax scipy requirement

- The broken fetch was due to a commit error.

- The relaxing of the scipy constraint is temporary until scipy can be
  updated.
Fri, 25 Sep 2020
[ 01:03 jrm search for other commits by this committer ] Original commit   Revision:549977
biology/py-biom-format: Update to version 2.1.8

Upstream changes:
https://github.com/biocore/biom-format/releases/tag/2.1.8
Sat, 6 Oct 2018
[ 15:28 jrm search for other commits by this committer ] Original commit   Revision:481369
biology/py-biom-format: Update to version 2.1.7

Reported by:	portscout
Sat, 29 Apr 2017
[ 13:59 jrm search for other commits by this committer ] Original commit   Revision:439751
biology/py-biom-format: Update to version 2.1.6

Upstream changes: https://github.com/biocore/biom-format/releases/tag/2.1.6

Approved by:	swills (mentor, implicit)
Mon, 9 May 2016
[ 16:37 olivierd search for other commits by this committer ] Original commit   Revision:414865
The BIOM file format (canonically pronounced biome) is designed to be a
general-use format for representing biological sample by observation contingency
tables. BIOM is a recognized standard for the Earth Microbiome Project and is a
Genomics Standards Consortium supported project.

The BIOM format is designed for general use in broad areas of comparative
-omics. For example, in marker-gene surveys, the primary use of this format is
to represent OTU tables: the observations in this case are OTUs and the matrix
contains counts corresponding to the number of times each OTU is observed in
each sample. With respect to metagenome data, this format would be used to
represent metagenome tables: the observations in this case might correspond to
SEED subsystems, and the matrix would contain counts corresponding to the number
of times each subsystem is observed in each metagenome. Similarly, with respect
to genome data, this format may be used to represent a set of genomes: the
observations in this case again might correspond to SEED subsystems, and the
counts would correspond to the number of times each subsystem is observed in
each genome.

WWW: http://biom-format.org/

PR:		209193
Submitted by:	Joseph Mingrone

Number of commits found: 6