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I'm proposing to take /commits.php away - it mainly duplicates the home page. Details in this GitHub issue.
non port: biology/py-biopython/Makefile
SVNWeb

Number of commits found: 64

Tue, 12 Oct 2021
[ 06:43 wen (Wen Heping) ]    commit hash:112c183adcabae0c499ce9ab723826c9ab407294  112c183 
biology/py-biopython: Update to 1.79

PR:		259046
Reported by:	wen@
Approved by:	maintainer
Tue, 6 Apr 2021
[ 14:31 mat (Mathieu Arnold) ]    commit hash:305f148f482daf30dcf728039d03d019f88344eb  305f148  (Only the first 10 of 29333 ports in this commit are shown above. View all ports for this commit)
Remove # $FreeBSD$ from Makefiles.
Fri, 16 Oct 2020
[ 19:12 jwb ] Original commit   Revision:552519
biology/py-biopython: Upgrade to 1.78

Eliminates Bio.Alphabet
Other minor improvements

PR:             ports/250324
Submitted by:   Mauricio Herrera Cuadra
Sat, 13 Jun 2020
[ 13:42 jwb ] Original commit   Revision:538671
biology/py-biopython: Set python requirement to 3.6+

New requirement for v1.77 overlooked during upgrade
Fri, 29 May 2020
[ 02:03 jwb ] Original commit   Revision:536875
biology/py-biopython: Upgrade to 1.77

Upstream support for python 3

PR:             ports/246763
Submitted by:   Mauricio Herrera Cuadra <mauricio@arareko.net>
Fri, 26 Jul 2019
[ 20:46 gerald ] Original commit   Revision:507372 (Only the first 10 of 3853 ports in this commit are shown above. View all ports for this commit)
Bump PORTREVISION for ports depending on the canonical version of GCC
as defined in Mk/bsd.default-versions.mk which has moved from GCC 8.3
to GCC 9.1 under most circumstances now after revision 507371.

This includes ports
 - with USE_GCC=yes or USE_GCC=any,
 - with USES=fortran,
 - using Mk/bsd.octave.mk which in turn features USES=fortran, and
 - with USES=compiler specifying openmp, nestedfct, c11, c++0x, c++11-lang,
   c++11-lib, c++14-lang, c++17-lang, or gcc-c++11-lib
plus, everything INDEX-11 shows with a dependency on lang/gcc9 now.

PR:		238330
Sat, 22 Dec 2018
[ 04:54 wen ] Original commit   Revision:488064
- Update to 1.73

PR:		234154
Submitted by:	wenheping2000@hotmail.com(myself)
Approved by:	maintainer
Wed, 12 Dec 2018
[ 01:35 gerald ] Original commit   Revision:487272 (Only the first 10 of 3168 ports in this commit are shown above. View all ports for this commit)
Bump PORTREVISION for ports depending on the canonical version of GCC
defined via Mk/bsd.default-versions.mk which has moved from GCC 7.4 t
GCC 8.2 under most circumstances.

This includes ports
 - with USE_GCC=yes or USE_GCC=any,
 - with USES=fortran,
 - using Mk/bsd.octave.mk which in turn features USES=fortran, and
 - with USES=compiler specifying openmp, nestedfct, c11, c++0x, c++11-lang,
   c++11-lib, c++14-lang, c++17-lang, or gcc-c++11-lib
plus, as a double check, everything INDEX-11 showed depending on lang/gcc7.

PR:		231590
Fri, 24 Aug 2018
[ 00:12 wen ] Original commit   Revision:477931
- Update to 1.72

PR:		230723
Submitted by:	wen@(myself)
Approved by:	maintainer
Wed, 20 Jun 2018
[ 17:05 mat ] Original commit   Revision:472884 (Only the first 10 of 1617 ports in this commit are shown above. View all ports for this commit)
Use PY_FLAVOR for dependencies.

FLAVOR is the current port's flavor, it should not be used outside of
this scope.

Sponsored by:	Absolight
Sun, 13 May 2018
[ 22:30 yuri ] Original commit   Revision:469835
biology/py-biopython: Unbreak on python3; Add license

Two items prevented python3 compatibility:
* Breakage of ASCII codec due to non-ascii characters in README:
https://github.com/biopython/biopython/issues/1649
* The outdated dependency: print/py-reportlab1 instead of the modern version 3.X
print/py-reportlab

Port changes:
* USES=python:2.7 -> USES=python
* Add pre-configure that clears the README file
* Add LICENSE/LICENSE_FILE

Testing:
* Ran the tutorial testcase
http://biopython.org/DIST/docs/tutorial/Tutorial.html,
  particularly pdf writing through print/py-reportlab worked fine.

Asked the upstream to clarify the acceptable dependency version:
https://github.com/biopython/biopython/issues/1650

Approved by:	portmgr blanket (unbreak for python3; add license)
Mon, 9 Apr 2018
[ 06:26 wen ] Original commit   Revision:466835
- Update to 1.71

Approved by:	mauricio@arareko.net(maintainer, via email)
Sat, 10 Mar 2018
[ 17:46 gerald ] Original commit   Revision:464084 (Only the first 10 of 1104 ports in this commit are shown above. View all ports for this commit)
Bump PORTREVISIONs of all users of math/mpc that we just updated to
version 1.1.0 (via revision 464079).
Mon, 19 Feb 2018
[ 11:10 antoine ] Original commit   Revision:462307 (Only the first 10 of 442 ports in this commit are shown above. View all ports for this commit)
Reduce dependency on the python2 metaport

PR:		225752
Submitted by:	Yasuhiro KIMURA
Thu, 30 Nov 2017
[ 15:50 mat ] Original commit   Revision:455210 (Only the first 10 of 2423 ports in this commit are shown above. View all ports for this commit)
Convert Python ports to FLAVORS.

  Ports using USE_PYTHON=distutils are now flavored.  They will
  automatically get flavors (py27, py34, py35, py36) depending on what
  versions they support.

  There is also a USE_PYTHON=flavors for ports that do not use distutils
  but need FLAVORS to be set.  A USE_PYTHON=noflavors can be set if
  using distutils but flavors are not wanted.

  A new USE_PYTHON=optsuffix that will add PYTHON_PKGNAMESUFFIX has been
  added to cope with Python ports that did not have the Python
  PKGNAMEPREFIX but are flavored.

  USES=python now also exports a PY_FLAVOR variable that contains the
(Only the first 15 lines of the commit message are shown above View all of this commit message)
Fri, 18 Aug 2017
[ 12:57 wen ] Original commit   Revision:448228
- update to 1.70

PR:		221443
Submitted by:	wen@(myself)
Approved by:	maintainer
Wed, 3 May 2017
[ 12:39 wen ] Original commit   Revision:440010
- Update to 1.69

PR:		218903
Submitted by:	wen@
Approved by:	maintainer
Fri, 23 Sep 2016
[ 01:54 wen ] Original commit   Revision:422643
- Update to 1.68

PR:		212874
Submitted by:	wen@(myself)
Approved by:	maintainer
Sun, 17 Apr 2016
[ 03:55 wen ] Original commit   Revision:413489
- Update to 1.66

PR:		208825
Submitted by:	wen@
Approved by:	maintainer
Fri, 1 Apr 2016
[ 13:29 mat ] Original commit   Revision:412344 (Only the first 10 of 1009 ports in this commit are shown above. View all ports for this commit)
Remove ${PORTSDIR}/ from dependencies, Mk and categories a, b, and c.

With hat:	portmgr
Sponsored by:	Absolight
Wed, 5 Aug 2015
[ 10:32 mat ] Original commit   Revision:393576
Update to 1.65.

PR:		201888
Submitted by:	brueffer
Approved by:	maintainer
Sponsored by:	Absolight
Mon, 19 Jan 2015
[ 20:21 makc ] Original commit   Revision:377466
biology/py-biopython:
- Convert to options framework

Approved by:	portmgr blanket
Sun, 19 Oct 2014
[ 07:38 mva ] Original commit   Revision:371171
- Convert ports from benchmarks/ and biology/ to new USES=python

Approved by:	portmgr (implicit)
Wed, 10 Sep 2014
[ 20:50 gerald ] Original commit   Revision:367888 (Only the first 10 of 3171 ports in this commit are shown above. View all ports for this commit)
Update the default version of GCC in the Ports Collection from GCC 4.7.4
to GCC 4.8.3.

Part II, Bump PORTREVISIONs.

PR:		192025
Tested by:	antoine (-exp runs)
Approved by:	portmgr (implicit)
Sun, 27 Apr 2014
[ 01:59 swills ] Original commit   Revision:352389
- Stage
- Drop easy_install
- Use auto pkg-plist
- Delete pkg-plist

PR:		ports/188818
Submitted by:	Bartek Rutkowski <ports@robakdesign.com>
Approved by:	portmgr@ (blanket)
Mon, 10 Mar 2014
[ 20:55 gerald ] Original commit   Revision:347809 (Only the first 10 of 1081 ports in this commit are shown above. View all ports for this commit)
Update the default version of GCC used in the Ports Collection from
GCC 4.6.4 to GCC 4.7.3.  This entails updating the lang/gcc port as
well as changing the default in Mk/bsd.default-versions.mk.

Part II, Bump PORTREVISIONs.

PR:		182136
Supported by:	Christoph Moench-Tegeder <cmt@burggraben.net> (fixing many ports)
Tested by:	bdrewery (two -exp runs)
Tue, 25 Feb 2014
[ 12:44 tota ] Original commit   Revision:345987 (Only the first 10 of 22 ports in this commit are shown above. View all ports for this commit)
- Repocopy print/py-reportlab to print/py-reportlab1
  to preserve version 1.x and to update to 3.0

  print/py-reportlab:
    - Update print/py-reportlab to 3.0 based on print/py-reportlab2
    - Support STAGEDIR
    - Use PYDISTUTILS_AUTOPLIST
      * Remove pkg-plist, accordingly
    - Set CONFLICTS
    - Add PORTSCOUT
    - Replace tab with a single space after WWW: in pkg-descr

  print/py-reportlab1:
    - Support STAGEDIR
    - Add PKGNAMESUFFIX not to duplicate ports with the same name
(Only the first 15 lines of the commit message are shown above View all of this commit message)
Mon, 13 Jan 2014
[ 21:00 rene ] Original commit   Revision:339634 (Only the first 10 of 702 ports in this commit are shown above. View all ports for this commit)
Python cleanup:
- USE_PYTHON* = 2.X -> USE_PYTHON* = 2
- USE_PYTHON* = 2.X+ -> USE_PYTHON* = yes
Reviewed by:	python (mva, rm)
Approved by:	portmgr-lurkers (mat)
Sat, 26 Oct 2013
[ 00:52 gerald ] Original commit   Revision:331644 (Only the first 10 of 1147 ports in this commit are shown above. View all ports for this commit)
Update to libmpc version 1.0.1 which brings the following fixes:

 - Switched to automake 1.11.6, see CVE-2012-3386.
 - #14669: Fixed extraction of CC from gmp.h.
 - Fixed case of intermediate zero real or imaginary part in mpc_fma,
   found by hydra with GMP_CHECK_RANDOMIZE=1346362345.

This is on top of the following changes from version 1.0

 - Licence change towards LGPLv3+ for the code and GFDLv1.3+ (with no
   invariant sections) for the documentation.
 - 100% of all lines are covered by tests
 - Renamed functions
   . mpc_mul_2exp to mpc_mul_2ui
   . mpc_div_2exp to mpc_div_2ui
(Only the first 15 lines of the commit message are shown above View all of this commit message)
Fri, 20 Sep 2013
[ 15:55 bapt ] Original commit   Revision:327709 (Only the first 10 of 94 ports in this commit are shown above. View all ports for this commit)
Add NO_STAGE all over the place in preparation for the staging support (cat:
biology)
Tue, 25 Sep 2012
[ 08:06 rm ] Original commit   Revision:304822
- update to 1.60

while here:
- convert Makefile header into two-line format
- update COMMENT (indefinite article removed)
- change USE_PYTHON to just -2.7
- remove py-reportlab from BUILD_DEPENDS and kick PYTHON_SITELIBDIR from there
- tab -> space change in pkg-descr:WWW

PR:		171115
Submitted by:	wen
Approved by:	Mauricio Herrera Cuadra <mauricio at arareko dot net> (maintainer)
Tue, 6 Mar 2012
[ 06:40 wen ] Original commit 
- Update to 1.59

PR:             ports/165582
Submitted by:   wen@ (myself)
Approved by:    Mauricio Herrera Cuadra <mauricio@arareko.net> (maintainer, via
email)
Tue, 24 May 2011
[ 09:06 wen ] Original commit 
- Update to 1.57

PR:             ports/156329
Submitted by:   Wen Heping (myself)
Approved by:    maintainer
Thu, 24 Feb 2011
[ 23:25 miwi ] Original commit  (Only the first 10 of 20 ports in this commit are shown above. View all ports for this commit)
- Move over to python2.5 or higher
- While here kick md5
Fri, 2 Jul 2010
[ 02:57 wen ] Original commit 
- Update to 1.54

PR:             ports/148274
Submitted by:   Ju Pengfei <jupengfei@gmail.com>
Approved by:    maintainer
Feature safe:   yes
Wed, 6 Jan 2010
[ 00:29 wen ] Original commit 
- Update to 1.53

PR:             ports/142221
Submitted by:   Wen Heping (myself)
Approved by:    maintainer
Fri, 4 Sep 2009
[ 20:41 miwi ] Original commit 
- Update to 138038

PR:             138038
Submitted by:   Wen Heping <wenheping@gmail.com>
Approved by:    maintainer
Sat, 11 Oct 2008
[ 15:26 miwi ] Original commit 
- Update to 1.48

PR:             127776
Submitted by:   Wen heping <wenheping@gmail.com>
Approved by:    maintainer
Mon, 11 Aug 2008
[ 22:06 miwi ] Original commit 
- Update to 1.47

PR:             125912
Submitted by:   Wen heping <wenheping@gmail.com>
Approved by:    maintainer timeout
Fri, 4 Jul 2008
[ 02:53 beech ] Original commit 
- Update to 1.45

PR:             ports/125134
Submitted by:   Wen heping <wenheping@gmail.com>
Approved by:    Mauricio Herrera Cuadra <mauricio@arareko.net> (maintainer)
Thu, 31 May 2007
[ 03:49 miwi ] Original commit 
- Fix typos.

Reported by:    stas@
Wed, 30 May 2007
[ 06:57 miwi ] Original commit 
- Update to 1.43

PR:             111817
Submitted by:   "P.BandieraPaiva" <paiva@unifesp.br>
Approved by:    maintainer
Tue, 31 Oct 2006
[ 13:25 miwi ] Original commit 
- Update to 1.42

PR:             ports/104635
Submitted by:   Thomas Abthorpe <thomas@goodking.ca>
Approved by:    maintainer
Fri, 11 Nov 2005
[ 01:15 mnag ] Original commit 
Update to 1.41
Take MAINTAINER
Add SHA256

PR:             88792
Submitted by:   Mauricio Herrera Cuadra <mauricio@arareko.net>
Sat, 20 Nov 2004
[ 08:09 linimon ] Original commit  (Only the first 10 of 33 ports in this commit are shown above. View all ports for this commit)
With portmgr hat on, reset inactive maintainer.  These ports are now up
for adoption.
Wed, 27 Oct 2004
[ 20:39 pav ] Original commit 
- Update to 1.30

PR:             ports/71400
Submitted by:   Stefan Walter <sw@gegenunendlich.de>
Approved by:    maintainer timeout (2 months)
Fri, 2 Jul 2004
[ 08:20 kris ] Original commit 
BROKEN: Does not build
Mon, 9 Feb 2004
[ 21:40 des ] Original commit 
Upgrade to 1.23.

Approved by:    maintainer timeout
Thu, 20 Nov 2003
[ 15:06 trevor ] Original commit  (Only the first 10 of 111 ports in this commit are shown above. View all ports for this commit)
Define USE_PERL5_BUILD, not erroneous USE_PERL.

Submitted by:   Oliver Eikemeier
[ 13:51 trevor ] Original commit  (Only the first 10 of 111 ports in this commit are shown above. View all ports for this commit)
Define USE_PERL to make Perl available for (mostly deprecated)
"perl -pi -e" construction.
Thu, 13 Nov 2003
[ 14:45 trevor ] Original commit  (Only the first 10 of 81 ports in this commit are shown above. View all ports for this commit)
Use the FIND and XARGS macros introduced in bsd.port.mk 1.391.
Fri, 7 Mar 2003
[ 05:56 ade ] Original commit  (Only the first 10 of 28 ports in this commit are shown above. View all ports for this commit)
Clear moonlight beckons.
Requiem mors pacem pkg-comment,
And be calm ports tree.

E Nomini Patri, E Fili, E Spiritu Sancti.
Mon, 15 Jul 2002
[ 11:37 tg ] Original commit 
Use $PYNUMERIC in the dependencies.
Tue, 22 Jan 2002
[ 10:54 wjv ] Original commit 
- Update to version 1.00a4    
Tue, 2 Oct 2001
[ 09:31 wjv ] Original commit 
- Update the included (optional) Biopython-CORBA pacakge to version 0.3.0   - If
CORBA support is included, the default ORB has changed from omniORB to     ORBit
  - PORTREVISION bump    
Thu, 6 Sep 2001
[ 13:42 wjv ] Original commit 
- Update to version 1.00.a3   - Use pkg-req to check the installed version of
Python    
Mon, 9 Jul 2001
[ 10:57 wjv ] Original commit 
Update to version 1.00.a2    
Fri, 29 Jun 2001
[ 16:04 wjv ] Original commit 
Use $FILESDIR rather than hard-coded path.    
Fri, 15 Jun 2001
[ 14:25 wjv ] Original commit 
Update to 1.00.a1; change MAINTAINER to my new address.   Many changes to port,
including addition of CORBA functionality.    
Tue, 29 May 2001
[ 13:50 sobomax ] Original commit 
math/numpy was renamed to math/py-numeric.    
Mon, 11 Sep 2000
[ 15:56 nbm ] Original commit 
Update to 0.90.d03    
Fri, 8 Sep 2000
[ 13:24 tg ] Original commit  (Only the first 10 of 26 ports in this commit are shown above. View all ports for this commit)
Don't break package building on Satoshi's cluster. Explicitly depend   on
python1.5:lang/python15.    
Sat, 5 Aug 2000
[ 17:01 will ] Original commit 
Upgrade to 0.90.d02.    
Mon, 31 Jul 2000
[ 13:12 nbm ] Original commit 
Add py-biopython, is a collection of Python packages and modules created   by
the Biopython Project, intended to provide the basis for building  
bioinformatics applications in the Python language.    

Number of commits found: 64