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non port: biology/py-cutadapt/distinfo

Number of commits found: 12

Thursday, 20 Jun 2024
08:38 Philippe Audeoud (jadawin) search for other commits by this committer
biology/py-cutadapt: update to 4.9

changelog:
https://cutadapt.readthedocs.io/en/stable/changes.html#v4-9-2024-06-19
commit hash: 62058b84ea1651cad66148356f3b8b833880afd6 commit hash: 62058b84ea1651cad66148356f3b8b833880afd6 commit hash: 62058b84ea1651cad66148356f3b8b833880afd6 commit hash: 62058b84ea1651cad66148356f3b8b833880afd6 62058b8
Tuesday, 28 May 2024
11:28 Philippe Audeoud (jadawin) search for other commits by this committer
biology/py-cutadapt: update to 4.8

While here, take maintainership
commit hash: 81c4dbffdc146c0f0900669e5978075d7951fdcc commit hash: 81c4dbffdc146c0f0900669e5978075d7951fdcc commit hash: 81c4dbffdc146c0f0900669e5978075d7951fdcc commit hash: 81c4dbffdc146c0f0900669e5978075d7951fdcc 81c4dbf
Saturday, 16 Mar 2024
13:31 Jason W. Bacon (jwb) search for other commits by this committer
py-cutadapt: Update to 4.7

Send error message to stderr
Add support for single-ended uBAM
Drop Python 3.7

Changes: https://cutadapt.readthedocs.io/en/stable/changes.html

Reported by:    portscout
commit hash: 43e4ca8d053f7d8bbcbe62b31dc55f5ce93b782e commit hash: 43e4ca8d053f7d8bbcbe62b31dc55f5ce93b782e commit hash: 43e4ca8d053f7d8bbcbe62b31dc55f5ce93b782e commit hash: 43e4ca8d053f7d8bbcbe62b31dc55f5ce93b782e 43e4ca8
Tuesday, 6 Feb 2024
12:55 Jason W. Bacon (jwb) search for other commits by this committer
biology/py-cutadapt: Update to 4.6

Numerous bug fixes and enhancements since 3.3
Changes: https://github.com/marcelm/cutadapt/tags

PR:             276814
Reported by:    wen
commit hash: 7c280eb4247df10ec0bebfbe6ffd6d42f36142fb commit hash: 7c280eb4247df10ec0bebfbe6ffd6d42f36142fb commit hash: 7c280eb4247df10ec0bebfbe6ffd6d42f36142fb commit hash: 7c280eb4247df10ec0bebfbe6ffd6d42f36142fb 7c280eb
Saturday, 6 Mar 2021
17:55 jwb search for other commits by this committer
py-cutadapt: Update to 3.3

Numerous small bug fixes and enhancements, code refactoring

py-xopen: Update to 1.1.0

Required by cutadapt 3.3
Drop python 3.5 support
Add isal support (not yet utilized in FreeBSD port)
Original commitRevision:567503 
Tuesday, 2 Feb 2021
20:39 jwb search for other commits by this committer
biology/py-cutadapt: Update to 3.2
biology/py-dnaio: Update to 0.5.0
archivers/py-xopen: Update to 1.0.0

Numerous bug fixes and enhancements since cutadapt 3.2

Document cutadapt dependency versions dnaio~=0.5.0 xopen~=1.0.0
Bump python dependency to 3.6+ to restrict package builds
Original commitRevision:563844 
Saturday, 23 Nov 2019
14:45 jwb search for other commits by this committer
biology/py-cutadapt: Upgrade to 2.7

Numerous minor fixes and enhancements.
Upstreamed setup.py patches for dependency versions.

Reported by:    portscout
Original commitRevision:518242 
Friday, 13 Sep 2019
13:17 jwb search for other commits by this committer
biology/py-cutadapt: Upgrade to 2.5

Add pigz run depend for parallel gzip/gunzip
Original commitRevision:511957 
Saturday, 27 Apr 2019
01:26 jwb search for other commits by this committer
biology/py-cutadapt: Upgrade to 2.3

Numerous bugfixes and enhancements since 2.1
Original commitRevision:500187 
Sunday, 24 Mar 2019
21:20 jwb search for other commits by this committer
biology/py-cutadapt: Upgrade to 2.1

Add do-test target
Original commitRevision:496783 
Thursday, 20 Sep 2018
14:10 jwb search for other commits by this committer
biology/py-cutadapt: Upgrade to 1.18

Approved by:    jrm (mentor)
Differential Revision:  https://reviews.freebsd.org/D17099
Original commitRevision:480173 
Wednesday, 29 Nov 2017
22:17 jwb search for other commits by this committer
[new port] biology/py-cutadapt: Finds and removes adapter sequences, primers, po
ly-A tails, etc
Approved by: jrm (mentor)
Differential Revision:  https://reviews.freebsd.org/D13294
Original commitRevision:455154 

Number of commits found: 12