Port details on branch 2022Q3 |
- py-orange3-single-cell Orange add-on for gene expression of single cell data
- 0.8.2_5 biology =0 0.8.2_5Version of this port present on the latest quarterly branch.
- Maintainer: yuri@FreeBSD.org
- Port Added: 2018-08-07 07:50:53
- Last Update: 2023-07-31 16:42:07
- Commit Hash: 57c7142
- Also Listed In: python
- License: AGPLv3+
- WWW:
- https://singlecell.biolab.si/
- Description:
- The Single Cell add-on for Orange3 adds functionality for analysis of single
cell data.
- ¦ ¦ ¦ ¦
- Manual pages:
- FreshPorts has no man page information for this port.
- pkg-plist: as obtained via:
make generate-plist - There is no configure plist information for this port.
- Dependency lines:
-
- ${PYTHON_PKGNAMEPREFIX}orange3-single-cell>0:biology/py-orange3-single-cell@${PY_FLAVOR}
- To install the port:
- cd /usr/ports/biology/py-orange3-single-cell/ && make install clean
- To add the package, run one of these commands:
- pkg install biology/py-orange3-single-cell
- pkg install py39-orange3-single-cell
NOTE: If this package has multiple flavors (see below), then use one of them instead of the name specified above. NOTE: This is a Python port. Instead of py39-orange3-single-cell listed in the above command, you can pick from the names under the Packages section.- PKGNAME: py39-orange3-single-cell
- Package flavors (<flavor>: <package>)
- py39: py39-orange3-single-cell
- distinfo:
- TIMESTAMP = 1539761270
SHA256 (biolab-orange3-single-cell-0.8.2_GH0.tar.gz) = eebda4303c208951fcbe8f383e0f310b20abedba425b0c68bbe65ae2806cc1bb
SIZE (biolab-orange3-single-cell-0.8.2_GH0.tar.gz) = 5521782
Packages (timestamps in pop-ups are UTC):
- Dependencies
- NOTE: FreshPorts displays only information on required and default dependencies. Optional dependencies are not covered.
- Build dependencies:
-
- gmake : devel/gmake
- py39-sphinx>=0,1 : textproc/py-sphinx@py39
- py39-setuptools>=63.1.0 : devel/py-setuptools@py39
- python3.9 : lang/python39
- Test dependencies:
-
- python3.9 : lang/python39
- Runtime dependencies:
-
- orange3>0 : misc/orange3
- py39-orange3-bioinformatics>0 : biology/py-orange3-bioinformatics@py39
- py39-astropy>0 : astro/py-astropy@py39
- py39-fastdtw>0 : math/py-fastdtw@py39
- py39-joblib>=0.11 : devel/py-joblib@py39
- py39-loompy>=2.0.10 : biology/py-loompy@py39
- py39-networkx>0 : math/py-networkx@py39
- py39-pandas>=0.23 : math/py-pandas@py39
- py39-scikit-learn>0 : science/py-scikit-learn@py39
- py39-numpy>=1.16,1<1.26,1 : math/py-numpy@py39
- py39-setuptools>=63.1.0 : devel/py-setuptools@py39
- python3.9 : lang/python39
- There are no ports dependent upon this port
Configuration Options:
- ===> The following configuration options are available for py39-orange3-single-cell-0.8.2_5:
DOCS=on: Build and/or install documentation
===> Use 'make config' to modify these settings
- Options name:
- biology_py-orange3-single-cell
- USES:
- python
- FreshPorts was unable to extract/find any pkg message
- Master Sites:
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