non port: biology/pycogent/Makefile |
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Number of commits found XX: 24 |
Thu, 26 Dec 2019
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[ 07:54 antoine ] 
520894 accessibility/py-papi/Makefile
520894 archivers/py-czipfile/Makefile
520894 audio/boodler/Makefile
520894 audio/dir2ogg/Makefile
520894 audio/jokosher/Makefile
520894 audio/mpdbrowser/Makefile
520894 audio/nekobee/Makefile
520894 audio/patchage/Makefile
520894 audio/py-ao/Makefile
520894 audio/py-id3/Makefile
(Only the first 10 of 255 ports in this commit are shown above. )
Deprecate a few ports
With hat: portmgr
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Fri, 26 Jul 2019
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[ 20:46 gerald ] 
507372 Mk/bsd.ruby.mk
507372 accessibility/atkmm/Makefile
507372 accessibility/kmag/Makefile
507372 accessibility/kmousetool/Makefile
507372 accessibility/kmouth/Makefile
507372 accessibility/libqaccessibilityclient/Makefile
507372 accessibility/qt5-speech/Makefile
507372 archivers/R-cran-zip/Makefile
507372 archivers/ark/Makefile
507372 archivers/brotli/Makefile
(Only the first 10 of 3853 ports in this commit are shown above. )
Bump PORTREVISION for ports depending on the canonical version of GCC
as defined in Mk/bsd.default-versions.mk which has moved from GCC 8.3
to GCC 9.1 under most circumstances now after revision 507371.
This includes ports
- with USE_GCC=yes or USE_GCC=any,
- with USES=fortran,
- using Mk/bsd.octave.mk which in turn features USES=fortran, and
- with USES=compiler specifying openmp, nestedfct, c11, c++0x, c++11-lang,
c++11-lib, c++14-lang, c++17-lang, or gcc-c++11-lib
plus, everything INDEX-11 shows with a dependency on lang/gcc9 now.
PR: 238330
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Wed, 12 Dec 2018
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[ 01:35 gerald ] 
487272 Mk/bsd.ruby.mk
487272 accessibility/atkmm/Makefile
487272 accessibility/kmag/Makefile
487272 accessibility/kmousetool/Makefile
487272 accessibility/kmouth/Makefile
487272 accessibility/qt5-speech/Makefile
487272 archivers/R-cran-zip/Makefile
487272 archivers/ark/Makefile
487272 archivers/brotli/Makefile
487272 archivers/c-blosc/Makefile
(Only the first 10 of 3168 ports in this commit are shown above. )
Bump PORTREVISION for ports depending on the canonical version of GCC
defined via Mk/bsd.default-versions.mk which has moved from GCC 7.4 t
GCC 8.2 under most circumstances.
This includes ports
- with USE_GCC=yes or USE_GCC=any,
- with USES=fortran,
- using Mk/bsd.octave.mk which in turn features USES=fortran, and
- with USES=compiler specifying openmp, nestedfct, c11, c++0x, c++11-lang,
c++11-lib, c++14-lang, c++17-lang, or gcc-c++11-lib
plus, as a double check, everything INDEX-11 showed depending on lang/gcc7.
PR: 231590
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Wed, 20 Jun 2018
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[ 17:05 mat ] 
472884 accessibility/speech-dispatcher/Makefile
472884 archivers/py-attic/Makefile
472884 archivers/py-libarchive-c/Makefile
472884 archivers/py-lz4/Makefile
472884 archivers/py-zstandard/Makefile
472884 astro/gpsd/Makefile
472884 astro/py-RO/Makefile
472884 astro/py-aipy/Makefile
472884 astro/py-astLib/Makefile
472884 astro/py-horoscopegenerator/Makefile
(Only the first 10 of 1617 ports in this commit are shown above. )
Use PY_FLAVOR for dependencies.
FLAVOR is the current port's flavor, it should not be used outside of
this scope.
Sponsored by: Absolight
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Sat, 10 Mar 2018
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[ 17:46 gerald ] 
464084 archivers/pxz/Makefile
464084 archivers/zip-ada/Makefile
464084 astro/R-cran-maptools/Makefile
464084 astro/astrometry/Makefile
464084 astro/kstars-kde4/Makefile
464084 astro/nightfall/Makefile
464084 astro/py-RO/Makefile
464084 astro/py-aipy/Makefile
464084 astro/py-astLib/Makefile
464084 astro/py-astropy/Makefile
(Only the first 10 of 1104 ports in this commit are shown above. )
Bump PORTREVISIONs of all users of math/mpc that we just updated to
version 1.1.0 (via revision 464079).
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Mon, 11 Dec 2017
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[ 16:54 antoine ] 
456050 astro/astrometry/Makefile
456050 audio/ardour5/Makefile
456050 audio/trommler/Makefile
456050 benchmarks/pybench/Makefile
456050 biology/pycogent/Makefile
456050 cad/freecad/Makefile
456050 chinese/sunpinyin/Makefile
456050 comms/gr-osmosdr/Makefile
456050 comms/py-libimobiledevice/Makefile
456050 databases/postgresql-libpqxx/Makefile
(Only the first 10 of 37 ports in this commit are shown above. )
- Those ports fail to build with python3
- Add some explicit FLAVOR to dependencies where needed
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Thu, 30 Nov 2017
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[ 15:50 mat ] 
455210 CHANGES
455210 MOVED
455210 Mk/Uses/gnome.mk
455210 Mk/Uses/pyqt.mk
455210 Mk/Uses/python.mk
455210 UPDATING
455210 accessibility/Makefile
455210 accessibility/accerciser/Makefile
455210 accessibility/caribou/Makefile
455210 accessibility/orca/Makefile
(Only the first 10 of 2423 ports in this commit are shown above. )
Convert Python ports to FLAVORS.
Ports using USE_PYTHON=distutils are now flavored. They will
automatically get flavors (py27, py34, py35, py36) depending on what
versions they support.
There is also a USE_PYTHON=flavors for ports that do not use distutils
but need FLAVORS to be set. A USE_PYTHON=noflavors can be set if
using distutils but flavors are not wanted.
A new USE_PYTHON=optsuffix that will add PYTHON_PKGNAMESUFFIX has been
added to cope with Python ports that did not have the Python
PKGNAMEPREFIX but are flavored.
USES=python now also exports a PY_FLAVOR variable that contains the (Only the first 15 lines of the commit message are shown above )
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Mon, 8 Aug 2016
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[ 11:21 wen ] 
419818 biology/pycogent/Makefile
419818 biology/pycogent/distinfo
- Update to 1.9 [1]
- Moved to github [1]
- Depend on newer sqlalchemy10 [1]
- Update pkg-descr and WWW [1]
- Limit python to -2.7 [2]
- Reset maintainer to python@ for better maintain
PR: 211621
Submitted by: pi@ [1], koobs@ [2]
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Fri, 1 Apr 2016
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[ 13:29 mat ] 
412344 Mk/Uses/gecko.mk
412344 Mk/bsd.fpc.mk
412344 Mk/bsd.gecko.mk
412344 Mk/bsd.port.mk
412344 accessibility/accerciser/Makefile
412344 accessibility/at-spi/Makefile
412344 accessibility/at-spi2-atk/Makefile
412344 accessibility/at-spi2-core/Makefile
412344 accessibility/caribou/Makefile
412344 accessibility/dasher/Makefile
(Only the first 10 of 1009 ports in this commit are shown above. )
Remove ${PORTSDIR}/ from dependencies, Mk and categories a, b, and c.
With hat: portmgr
Sponsored by: Absolight
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Sun, 19 Oct 2014
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[ 07:38 mva ] 
371171 benchmarks/pybench/Makefile
371171 benchmarks/tsung/Makefile
371171 biology/py-biopython/Makefile
371171 biology/pycogent/Makefile
371171 biology/pyfasta/Makefile
371171 biology/python-nexus/Makefile
371171 biology/seqan/Makefile
371171 biology/velvet/Makefile
- Convert ports from benchmarks/ and biology/ to new USES=python
Approved by: portmgr (implicit)
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Wed, 10 Sep 2014
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[ 20:50 gerald ] 
367888 accessibility/accerciser/Makefile
367888 accessibility/jovie/Makefile
367888 accessibility/kaccessible/Makefile
367888 accessibility/kdeaccessibility4/Makefile
367888 accessibility/kmag/Makefile
367888 accessibility/kmousetool/Makefile
367888 accessibility/kmouth/Makefile
367888 accessibility/orca/Makefile
367888 arabic/kde4-l10n/Makefile
367888 arabic/libreoffice/Makefile
(Only the first 10 of 3171 ports in this commit are shown above. )
Update the default version of GCC in the Ports Collection from GCC 4.7.4
to GCC 4.8.3.
Part II, Bump PORTREVISIONs.
PR: 192025
Tested by: antoine (-exp runs)
Approved by: portmgr (implicit)
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Fri, 2 May 2014
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[ 14:00 wen ] 
352814 biology/pycogent/Makefile
352814 biology/pycogent/pkg-descr
352814 biology/pycogent/pkg-plist
- Stage support [1]
- Pet portlint [1]
- Add LICENSE
- Convert to PYDISTUTILS_AUTOPLIST
PR: 188819 [1]
Submitted by: Bartek Rutkowski <ports@robakdesign.com> [1]
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Mon, 10 Mar 2014
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[ 20:55 gerald ] 
347809 archivers/hs-tar/Makefile
347809 archivers/hs-zip-archive/Makefile
347809 archivers/hs-zlib-bindings/Makefile
347809 archivers/hs-zlib-conduit/Makefile
347809 archivers/hs-zlib-enum/Makefile
347809 archivers/hs-zlib/Makefile
347809 astro/R-cran-maptools/Makefile
347809 astro/astrometry/Makefile
347809 astro/nightfall/Makefile
347809 astro/py-RO/Makefile
(Only the first 10 of 1081 ports in this commit are shown above. )
Update the default version of GCC used in the Ports Collection from
GCC 4.6.4 to GCC 4.7.3. This entails updating the lang/gcc port as
well as changing the default in Mk/bsd.default-versions.mk.
Part II, Bump PORTREVISIONs.
PR: 182136
Supported by: Christoph Moench-Tegeder <cmt@burggraben.net> (fixing many ports)
Tested by: bdrewery (two -exp runs)
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Sat, 26 Oct 2013
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[ 00:52 gerald ] 
331644 archivers/hs-tar/Makefile
331644 archivers/hs-zip-archive/Makefile
331644 archivers/hs-zlib-bindings/Makefile
331644 archivers/hs-zlib-conduit/Makefile
331644 archivers/hs-zlib-enum/Makefile
331644 archivers/hs-zlib/Makefile
331644 astro/R-cran-maptools/Makefile
331644 astro/astrometry/Makefile
331644 astro/nightfall/Makefile
331644 astro/py-RO/Makefile
(Only the first 10 of 1147 ports in this commit are shown above. )
Update to libmpc version 1.0.1 which brings the following fixes:
- Switched to automake 1.11.6, see CVE-2012-3386.
- #14669: Fixed extraction of CC from gmp.h.
- Fixed case of intermediate zero real or imaginary part in mpc_fma,
found by hydra with GMP_CHECK_RANDOMIZE=1346362345.
This is on top of the following changes from version 1.0
- Licence change towards LGPLv3+ for the code and GFDLv1.3+ (with no
invariant sections) for the documentation.
- 100% of all lines are covered by tests
- Renamed functions
. mpc_mul_2exp to mpc_mul_2ui
. mpc_div_2exp to mpc_div_2ui (Only the first 15 lines of the commit message are shown above )
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Fri, 20 Sep 2013
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[ 15:55 bapt ] 
327709 biology/ariadne/Makefile
327709 biology/artemis/Makefile
327709 biology/avida/Makefile
327709 biology/babel/Makefile
327709 biology/biococoa/Makefile
327709 biology/biojava/Makefile
327709 biology/blast/Makefile
327709 biology/blat/Makefile
327709 biology/boinc-simap/Makefile
327709 biology/chemeq/Makefile
(Only the first 10 of 94 ports in this commit are shown above. )
Add NO_STAGE all over the place in preparation for the staging support (cat:
biology)
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Mon, 8 Oct 2012
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[ 03:17 wen ] 
305516 biology/pycogent/Makefile
305516 biology/pycogent/distinfo
305516 biology/pycogent/pkg-plist
- Update to 1.5.3
- Trim Makefile headers
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Sun, 10 Jun 2012
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[ 18:42 swills ]
1.8 arabic/arabtex/Makefile
1.5 archivers/p5-Archive-SimpleExtractor/Makefile
1.20 archivers/p5-POE-Filter-Zlib/Makefile
1.7 archivers/p5-PerlIO-via-Bzip2/Makefile
1.12 audio/gigedit/Makefile
1.8 audio/p5-Filesys-Virtual-DAAP/Makefile
1.9 audio/p5-Net-DAAP-Client/Makefile
1.6 benchmarks/p5-Benchmark-Stopwatch/Makefile
1.28 biology/p5-AcePerl/Makefile
1.28 biology/p5-Bio-Das/Makefile
(Only the first 10 of 639 ports in this commit are shown above. )
- Convert all remaining instances of BUILD_DEPENDS=${RUN_DEPENDS} or
RUN_DEPENDS=${BUILD_DEPENDS} to use := which portlint has warned
about for a while.
PR: ports/168208
Approved by: portmgr (miwi)
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Thu, 11 Aug 2011
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[ 11:37 wen ]
1.7 biology/pycogent/Makefile
1.5 biology/pycogent/distinfo
1.5 biology/pycogent/pkg-plist
- Update to 1.5.1
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Sat, 25 Jun 2011
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[ 07:21 nivit ]
1.6 biology/pycogent/Makefile
1.12 databases/py-Elixir/Makefile
1.10 games/anki/Makefile.inc
1.11 games/py-anki/Makefile
- Fix *_DEPENDS after the repocopy of databases/py-sqlalchemy
(This port doesn't yet support SQLAlchemy 0.7.X)
- Bump PORTREVISION
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Wed, 10 Nov 2010
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[ 08:52 wen ]
1.5 biology/pycogent/Makefile
1.4 biology/pycogent/distinfo
1.4 biology/pycogent/pkg-plist
- Update to 1.5.0
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Tue, 1 Jun 2010
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[ 06:57 wen ]
1.4 biology/pycogent/Makefile
1.3 biology/pycogent/distinfo
1.3 biology/pycogent/pkg-plist
- Update to 1.4.1
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Thu, 17 Dec 2009
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[ 06:51 wen ]
1.3 biology/pycogent/Makefile
1.2 biology/pycogent/distinfo
1.2 biology/pycogent/pkg-plist
- Update to 1.4
- Update my mail address to FreeBSD
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Sat, 22 Aug 2009
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[ 00:15 amdmi3 ]
1.22 benchmarks/iperf/Makefile
1.24 benchmarks/lmbench/Makefile
1.14 benchmarks/sysbench/Makefile
1.26 biology/avida/Makefile
1.2 biology/libsbml/Makefile
1.23 biology/mopac/Makefile
1.10 biology/protomol/Makefile
1.2 biology/pycogent/Makefile
1.9 cad/adms/Makefile
1.7 cad/atlc/Makefile
(Only the first 10 of 78 ports in this commit are shown above. )
- Switch SourceForge ports to the new File Release System: categories starting
with B,C
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Mon, 22 Jun 2009
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[ 12:46 miwi ]
1.109 biology/Makefile
1.1 biology/pycogent/Makefile
1.1 biology/pycogent/distinfo
1.1 biology/pycogent/pkg-descr
1.1 biology/pycogent/pkg-plist
PyCogent is a software library for genomic biology. It is a fully integrated
and thoroughly tested framework for: controlling third-party applications;
devising workflows; querying databases; conducting novel probabilistic
analyses of biological sequence evolution; and generating publication quality
graphics. It is distinguished by many unique built-in capabilities (such as
true codon alignment) and the frequent addition of entirely new methods for
the analysis of genomic data.
WWW: http://pycogent.sourceforge.net/
PR: ports/135863
Submitted by: Wen Heping <wenheping at gmail.com>
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Number of commits found XX: 24 |