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non port: biology/pyfasta/Makefile
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Number of commits found: 27

Fri, 26 Jul 2019
[ 20:46 gerald ] Original commit   Revision:507372
507372 Mk/bsd.ruby.mk
507372 accessibility/atkmm/Makefile
507372 accessibility/kmag/Makefile
507372 accessibility/kmousetool/Makefile
507372 accessibility/kmouth/Makefile
507372 accessibility/libqaccessibilityclient/Makefile
507372 accessibility/qt5-speech/Makefile
507372 archivers/R-cran-zip/Makefile
507372 archivers/ark/Makefile
507372 archivers/brotli/Makefile

(Only the first 10 of 3853 ports in this commit are shown above. View all ports for this commit)
Bump PORTREVISION for ports depending on the canonical version of GCC
as defined in Mk/bsd.default-versions.mk which has moved from GCC 8.3
to GCC 9.1 under most circumstances now after revision 507371.

This includes ports
 - with USE_GCC=yes or USE_GCC=any,
 - with USES=fortran,
 - using Mk/bsd.octave.mk which in turn features USES=fortran, and
 - with USES=compiler specifying openmp, nestedfct, c11, c++0x, c++11-lang,
   c++11-lib, c++14-lang, c++17-lang, or gcc-c++11-lib
plus, everything INDEX-11 shows with a dependency on lang/gcc9 now.

PR:		238330
Wed, 12 Dec 2018
[ 01:35 gerald ] Original commit   Revision:487272
487272 Mk/bsd.ruby.mk
487272 accessibility/atkmm/Makefile
487272 accessibility/kmag/Makefile
487272 accessibility/kmousetool/Makefile
487272 accessibility/kmouth/Makefile
487272 accessibility/qt5-speech/Makefile
487272 archivers/R-cran-zip/Makefile
487272 archivers/ark/Makefile
487272 archivers/brotli/Makefile
487272 archivers/c-blosc/Makefile

(Only the first 10 of 3168 ports in this commit are shown above. View all ports for this commit)
Bump PORTREVISION for ports depending on the canonical version of GCC
defined via Mk/bsd.default-versions.mk which has moved from GCC 7.4 t
GCC 8.2 under most circumstances.

This includes ports
 - with USE_GCC=yes or USE_GCC=any,
 - with USES=fortran,
 - using Mk/bsd.octave.mk which in turn features USES=fortran, and
 - with USES=compiler specifying openmp, nestedfct, c11, c++0x, c++11-lang,
   c++11-lib, c++14-lang, c++17-lang, or gcc-c++11-lib
plus, as a double check, everything INDEX-11 showed depending on lang/gcc7.

PR:		231590
Sat, 10 Mar 2018
[ 17:46 gerald ] Original commit   Revision:464084
464084 archivers/pxz/Makefile
464084 archivers/zip-ada/Makefile
464084 astro/R-cran-maptools/Makefile
464084 astro/astrometry/Makefile
464084 astro/kstars-kde4/Makefile
464084 astro/nightfall/Makefile
464084 astro/py-RO/Makefile
464084 astro/py-aipy/Makefile
464084 astro/py-astLib/Makefile
464084 astro/py-astropy/Makefile

(Only the first 10 of 1104 ports in this commit are shown above. View all ports for this commit)
Bump PORTREVISIONs of all users of math/mpc that we just updated to
version 1.1.0 (via revision 464079).
Thu, 30 Nov 2017
[ 15:50 mat ] Original commit   Revision:455210
455210 CHANGES
455210 MOVED
455210 Mk/Uses/gnome.mk
455210 Mk/Uses/pyqt.mk
455210 Mk/Uses/python.mk
455210 UPDATING
455210 accessibility/Makefile
455210 accessibility/accerciser/Makefile
455210 accessibility/caribou/Makefile
455210 accessibility/orca/Makefile

(Only the first 10 of 2423 ports in this commit are shown above. View all ports for this commit)
Convert Python ports to FLAVORS.

  Ports using USE_PYTHON=distutils are now flavored.  They will
  automatically get flavors (py27, py34, py35, py36) depending on what
  versions they support.

  There is also a USE_PYTHON=flavors for ports that do not use distutils
  but need FLAVORS to be set.  A USE_PYTHON=noflavors can be set if
  using distutils but flavors are not wanted.

  A new USE_PYTHON=optsuffix that will add PYTHON_PKGNAMESUFFIX has been
  added to cope with Python ports that did not have the Python
  PKGNAMEPREFIX but are flavored.

  USES=python now also exports a PY_FLAVOR variable that contains the
(Only the first 15 lines of the commit message are shown above View all of this commit message)
Sun, 19 Oct 2014
[ 07:38 mva ] Original commit   Revision:371171
371171 benchmarks/pybench/Makefile
371171 benchmarks/tsung/Makefile
371171 biology/py-biopython/Makefile
371171 biology/pycogent/Makefile
371171 biology/pyfasta/Makefile
371171 biology/python-nexus/Makefile
371171 biology/seqan/Makefile
371171 biology/velvet/Makefile
- Convert ports from benchmarks/ and biology/ to new USES=python

Approved by:	portmgr (implicit)
Wed, 10 Sep 2014
[ 20:50 gerald ] Original commit   Revision:367888
367888 accessibility/accerciser/Makefile
367888 accessibility/jovie/Makefile
367888 accessibility/kaccessible/Makefile
367888 accessibility/kdeaccessibility4/Makefile
367888 accessibility/kmag/Makefile
367888 accessibility/kmousetool/Makefile
367888 accessibility/kmouth/Makefile
367888 accessibility/orca/Makefile
367888 arabic/kde4-l10n/Makefile
367888 arabic/libreoffice/Makefile

(Only the first 10 of 3171 ports in this commit are shown above. View all ports for this commit)
Update the default version of GCC in the Ports Collection from GCC 4.7.4
to GCC 4.8.3.

Part II, Bump PORTREVISIONs.

PR:		192025
Tested by:	antoine (-exp runs)
Approved by:	portmgr (implicit)
Sun, 6 Apr 2014
[ 04:05 wen ] Original commit   Revision:350289
350289 biology/pyfasta/Makefile
350289 biology/pyfasta/distinfo
- Update to 0.5.2
- Add LICENSE
Mon, 10 Mar 2014
[ 20:55 gerald ] Original commit   Revision:347809
347809 archivers/hs-tar/Makefile
347809 archivers/hs-zip-archive/Makefile
347809 archivers/hs-zlib-bindings/Makefile
347809 archivers/hs-zlib-conduit/Makefile
347809 archivers/hs-zlib-enum/Makefile
347809 archivers/hs-zlib/Makefile
347809 astro/R-cran-maptools/Makefile
347809 astro/astrometry/Makefile
347809 astro/nightfall/Makefile
347809 astro/py-RO/Makefile

(Only the first 10 of 1081 ports in this commit are shown above. View all ports for this commit)
Update the default version of GCC used in the Ports Collection from
GCC 4.6.4 to GCC 4.7.3.  This entails updating the lang/gcc port as
well as changing the default in Mk/bsd.default-versions.mk.

Part II, Bump PORTREVISIONs.

PR:		182136
Supported by:	Christoph Moench-Tegeder <cmt@burggraben.net> (fixing many ports)
Tested by:	bdrewery (two -exp runs)
Fri, 31 Jan 2014
[ 12:31 miwi ] Original commit   Revision:341984
341984 biology/pyfasta/Makefile
341984 biology/pyfasta/pkg-plist
- Convert to PYDISTUTILS_AUTOPLIST
- Stage support
- Bump PORTREV
Mon, 13 Jan 2014
[ 21:00 rene ] Original commit   Revision:339634
339634 accessibility/accerciser/Makefile
339634 accessibility/at-spi/Makefile
339634 accessibility/orca/Makefile
339634 accessibility/py-atspi/Makefile
339634 accessibility/py-papi/Makefile
339634 archivers/rpm4/Makefile
339634 astro/astrometry/Makefile
339634 astro/py-metar/Makefile
339634 astro/pyephem/Makefile
339634 audio/alsa-lib/Makefile

(Only the first 10 of 702 ports in this commit are shown above. View all ports for this commit)
Python cleanup:
- USE_PYTHON* = 2.X -> USE_PYTHON* = 2
- USE_PYTHON* = 2.X+ -> USE_PYTHON* = yes
Reviewed by:	python (mva, rm)
Approved by:	portmgr-lurkers (mat)
Sat, 26 Oct 2013
[ 00:52 gerald ] Original commit   Revision:331644
331644 archivers/hs-tar/Makefile
331644 archivers/hs-zip-archive/Makefile
331644 archivers/hs-zlib-bindings/Makefile
331644 archivers/hs-zlib-conduit/Makefile
331644 archivers/hs-zlib-enum/Makefile
331644 archivers/hs-zlib/Makefile
331644 astro/R-cran-maptools/Makefile
331644 astro/astrometry/Makefile
331644 astro/nightfall/Makefile
331644 astro/py-RO/Makefile

(Only the first 10 of 1147 ports in this commit are shown above. View all ports for this commit)
Update to libmpc version 1.0.1 which brings the following fixes:

 - Switched to automake 1.11.6, see CVE-2012-3386.
 - #14669: Fixed extraction of CC from gmp.h.
 - Fixed case of intermediate zero real or imaginary part in mpc_fma,
   found by hydra with GMP_CHECK_RANDOMIZE=1346362345.

This is on top of the following changes from version 1.0

 - Licence change towards LGPLv3+ for the code and GFDLv1.3+ (with no
   invariant sections) for the documentation.
 - 100% of all lines are covered by tests
 - Renamed functions
   . mpc_mul_2exp to mpc_mul_2ui
   . mpc_div_2exp to mpc_div_2ui
(Only the first 15 lines of the commit message are shown above View all of this commit message)
Fri, 4 Oct 2013
[ 08:09 wen ] Original commit   Revision:329270
329270 biology/pyfasta/Makefile
329270 biology/pyfasta/distinfo
329270 biology/pyfasta/pkg-descr
- Update to 0.5.1
Fri, 20 Sep 2013
[ 15:55 bapt ] Original commit   Revision:327709
327709 biology/ariadne/Makefile
327709 biology/artemis/Makefile
327709 biology/avida/Makefile
327709 biology/babel/Makefile
327709 biology/biococoa/Makefile
327709 biology/biojava/Makefile
327709 biology/blast/Makefile
327709 biology/blat/Makefile
327709 biology/boinc-simap/Makefile
327709 biology/chemeq/Makefile

(Only the first 10 of 94 ports in this commit are shown above. View all ports for this commit)
Add NO_STAGE all over the place in preparation for the staging support (cat:
biology)
Sat, 1 Jun 2013
[ 14:22 wen ] Original commit   Revision:319570
319570 astro/p5-GPS-OID/Makefile
319570 astro/p5-Starlink-AST/Makefile
319570 astro/py-aipy/Makefile
319570 astro/pyephem/Makefile
319570 audio/py-pyliblo/Makefile
319570 biology/p5-Bio-SCF/Makefile
319570 biology/paml/Makefile
319570 biology/pyfasta/Makefile
- Trim Makefile headers
Thu, 23 Feb 2012
[ 13:43 wen ] Original commit 
1.13 biology/pyfasta/Makefile
1.12 biology/pyfasta/distinfo
- Update to 0.4.5
Thu, 13 Oct 2011
[ 06:27 wen ] Original commit 
1.12 biology/pyfasta/Makefile
1.11 biology/pyfasta/distinfo
- Update to 0.44
Thu, 2 Jun 2011
[ 01:38 wen ] Original commit 
1.11 biology/pyfasta/Makefile
1.10 biology/pyfasta/distinfo
- Update to 0.4.3
Wed, 13 Apr 2011
[ 09:11 wen ] Original commit 
1.10 biology/pyfasta/Makefile
1.9 biology/pyfasta/distinfo
- Update to 0.4.2
Thu, 2 Dec 2010
[ 13:42 wen ] Original commit 
1.9 biology/pyfasta/Makefile
1.8 biology/pyfasta/distinfo
- Update to 0.4.1
Tue, 26 Oct 2010
[ 00:34 wen ] Original commit 
1.8 biology/pyfasta/Makefile
1.7 biology/pyfasta/distinfo
- Update to 0.4.0
Wed, 18 Aug 2010
[ 14:09 glarkin ] Original commit 
1.7 biology/pyfasta/Makefile
- Update USE_PYTHON in Makefile to reflect upstream Python
  dependency version requirement

PR:             ports/149251
Submitted by:   glarkin
Approved by:    wen (via email)
Fri, 19 Mar 2010
[ 08:32 wen ] Original commit 
1.6 biology/pyfasta/Makefile
1.6 biology/pyfasta/distinfo
- Update to 0.3.9
Thu, 24 Dec 2009
[ 03:14 wen ] Original commit 
1.5 biology/pyfasta/Makefile
1.5 biology/pyfasta/distinfo
- Update to 0.3.7
Mon, 21 Dec 2009
[ 03:29 wen ] Original commit 
1.4 biology/pyfasta/Makefile
1.4 biology/pyfasta/distinfo
- Update to 0.3.5
Wed, 16 Dec 2009
[ 12:48 wen ] Original commit 
1.3 biology/pyfasta/Makefile
1.3 biology/pyfasta/distinfo
- Update to 0.3.4
Sun, 6 Dec 2009
[ 08:47 wen ] Original commit 
1.2 biology/pyfasta/Makefile
1.2 biology/pyfasta/distinfo
1.2 biology/pyfasta/pkg-plist
- Update to 0.3.3
Wed, 18 Nov 2009
[ 05:53 wen ] Original commit 
1.116 biology/Makefile
1.1 biology/pyfasta/Makefile
1.1 biology/pyfasta/distinfo
1.1 biology/pyfasta/pkg-descr
1.1 biology/pyfasta/pkg-plist
pyfasta is a python module for fast, memory-efficient, pythonic
access to fasta sequence files.

WWW:    http://bitbucket.org/brentp/biostuff/src/

Number of commits found: 27

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