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Why was the website so slow for so long?

The cause of the slowdown was a change to the ZFS dataset. In conjunction with the database server, very little caching was being done. This combination resulted in increased disk I/O as the system churned through the database. Details in the blog post which outlines the various things which changed. Many graphs.

non port: biology/ruby-bio/Makefile
SVNWeb

Number of commits found: 35

Sun, 7 May 2017
[ 15:44 miwi ] Original commit   Revision:440343
440343 biology/ruby-bio/Makefile
440343 biology/ruby-bio/distinfo
- Update to 1.5.1
Fri, 1 Apr 2016
[ 13:29 mat ] Original commit   Revision:412344
412344 Mk/Uses/gecko.mk
412344 Mk/bsd.fpc.mk
412344 Mk/bsd.gecko.mk
412344 Mk/bsd.port.mk
412344 accessibility/accerciser/Makefile
412344 accessibility/at-spi/Makefile
412344 accessibility/at-spi2-atk/Makefile
412344 accessibility/at-spi2-core/Makefile
412344 accessibility/caribou/Makefile
412344 accessibility/dasher/Makefile

(Only the first 10 of 1009 ports in this commit are shown above. View all ports for this commit)
Remove ${PORTSDIR}/ from dependencies, Mk and categories a, b, and c.

With hat:	portmgr
Sponsored by:	Absolight
Thu, 31 Mar 2016
[ 17:36 amdmi3 ] Original commit   Revision:412278
412278 biology/ruby-bio/Makefile
412278 biology/ruby-bio/distinfo
412278 biology/ruby-bio/pkg-plist
- Update to 1.5.0

PR:		208351
Submitted by:	wen@FreeBSD.org
Approved by:	mauricio@arareko.net (maintainer)
Sun, 17 Jan 2016
[ 07:06 swills ] Original commit   Revision:406285
406285 audio/ruby-audiofile/Makefile
406285 audio/ruby-xmms2/Makefile
406285 biology/ruby-bio/Makefile
406285 databases/ruby-bdb/Makefile
406285 databases/ruby-mysql/Makefile
406285 databases/rubygem-bdb1/Makefile
406285 devel/ruby-calendar/Makefile
406285 devel/ruby-date2/Makefile
406285 devel/ruby-langscan/Makefile
406285 devel/ruby-rbbr/Makefile

(Only the first 10 of 26 ports in this commit are shown above. View all ports for this commit)
mark ports that don't work with Ruby 2.3

PR:		205774
Sat, 10 Oct 2015
[ 23:15 sunpoet ] Original commit   Revision:399072
399072 biology/ruby-bio/Makefile
- Fix typo

Approved by:	portmgr (blanket)
Thu, 3 Sep 2015
[ 16:23 sunpoet ] Original commit   Revision:395991
395991 biology/ruby-bio/Makefile
395991 biology/ruby-bio/pkg-descr
- Add LICENSE
- Add NO_ARCH
- Use BROKEN_RUBY22
- While I'm here, use single space after WWW:

Approved by:	portmgr (blanket)
With hat:	ruby
Mon, 17 Aug 2015
[ 14:20 mat ] Original commit   Revision:394508
394508 CHANGES
394508 Mk/bsd.database.mk
394508 Mk/bsd.options.mk
394508 Mk/bsd.port.mk
394508 Mk/bsd.sanity.mk
394508 Tools/scripts/README
394508 Tools/scripts/check-latest-link
394508 UPDATING
394508 audio/amarok-kde4/Makefile
394508 audio/jack/Makefile

(Only the first 10 of 271 ports in this commit are shown above. View all ports for this commit)
Remove UNIQUENAME and LATEST_LINK.

UNIQUENAME was never unique, it was only used by USE_LDCONFIG and now,
we won't have conflicts there.

Use PKGBASE instead of LATEST_LINK in PKGLATESTFILE, the *only* consumer
is pkg-devel, and it works just fine without LATEST_LINK as pkg-devel
has the correct PKGNAME anyway.

Now that UNIQUENAME is gone, OPTIONSFILE is too. (it's been called
OPTIONS_FILE now.)

Reviewed by:	antoine, bapt
Exp-run by:	antoine
Sponsored by:	Absolight
Differential Revision:	https://reviews.freebsd.org/D3336
Fri, 3 Apr 2015
[ 13:50 swills ] Original commit   Revision:383123
383123 biology/ruby-bio/Makefile
biology/ruby-bio: mark broken with ruby 2.2
Sun, 21 Sep 2014
[ 13:44 dinoex ] Original commit   Revision:368754
368754 biology/ruby-bio/Makefile
- any version for RUN_DEPENDS
[ 09:51 dinoex ] Original commit   Revision:368736
368736 biology/ruby-bio/Makefile
- update RUN_DEPENDS for rubygems-dbi
Mon, 7 Apr 2014
[ 13:01 bapt ] Original commit   Revision:350461
350461 biology/ruby-bio/Makefile
350461 biology/ruby-bio/pkg-plist
Support stage
Wed, 15 Jan 2014
[ 22:52 bapt ] Original commit   Revision:339846
339846 biology/ruby-bio/Makefile
Reduce over inclusion of bsd.port.mk
Fri, 20 Sep 2013
[ 15:55 bapt ] Original commit   Revision:327709
327709 biology/ariadne/Makefile
327709 biology/artemis/Makefile
327709 biology/avida/Makefile
327709 biology/babel/Makefile
327709 biology/biococoa/Makefile
327709 biology/biojava/Makefile
327709 biology/blast/Makefile
327709 biology/blat/Makefile
327709 biology/boinc-simap/Makefile
327709 biology/chemeq/Makefile

(Only the first 10 of 94 ports in this commit are shown above. View all ports for this commit)
Add NO_STAGE all over the place in preparation for the staging support (cat:
biology)
Mon, 18 Mar 2013
[ 06:55 jgh ] Original commit   Revision:314532
314532 biology/ruby-bio/Makefile
- adoption of optionsNG
- trim historical header

Approved by:	portmgr (miwi)
Mon, 27 Dec 2010
[ 15:11 pgollucci ] Original commit 
1.21 biology/ruby-bio/Makefile
1.19 biology/ruby-bio/distinfo
1.16 biology/ruby-bio/pkg-plist
- Update to 1.4.1
- Remove MD5

PR:             ports/153394
Submitted by:   myself (pgollucci)
Approved by:    mauricio@arareko.net (maintainer)
Sponsored by:   RideCharge Inc. / TaxiMagic
Tue, 8 Jun 2010
[ 00:18 pgollucci ] Original commit 
1.20 biology/ruby-bio/Makefile
1.18 biology/ruby-bio/distinfo
1.15 biology/ruby-bio/pkg-plist
- Update to 1.4.0
- Sort pkg-plist
- seperate NOPORTDOCS and NOPORTEXAMPLES
Wed, 24 Oct 2007
[ 01:38 clsung ] Original commit 
1.19 biology/ruby-bio/Makefile
1.17 biology/ruby-bio/distinfo
1.14 biology/ruby-bio/pkg-plist
- Update to 1.1.0

PR:             ports/117369
Submitted by:   Motomichi Matsuzaki <mzaki_AT_e-mail dot ne dot jp>
Approved by:    maintainer (Mauricio Herrera Cuadra)
Tue, 25 Apr 2006
[ 22:09 pav ] Original commit 
1.18 biology/ruby-bio/Makefile
1.16 biology/ruby-bio/distinfo
1.13 biology/ruby-bio/pkg-plist
- Update to 1.0.0
- Provide OPTIONS
- Take maintainership

PR:             ports/94123
Submitted by:   Mauricio Herrera Cuadra <mauricio@arareko.net>
Fri, 11 Nov 2005
[ 01:18 linimon ] Original commit 
1.16 archivers/ruby-bz2/Makefile
1.14 archivers/ruby-zip/Makefile
1.7 audio/p5-MusicBrainz-Client/Makefile
1.7 audio/p5-MusicBrainz-Queries/Makefile
1.7 audio/p5-MusicBrainz-TRM/Makefile
1.8 audio/py-musicbrainz/Makefile
1.11 audio/ruby-audiofile/Makefile
1.3 audio/ruby-esound/Makefile
1.13 audio/ruby-freedb/Makefile
1.7 audio/ruby-mp3info/Makefile

(Only the first 10 of 286 ports in this commit are shown above. View all ports for this commit)
With portmgr hat on, reset maintainership of knu's ports since he has
been inactive more than 6 months.  We hope to see him back sometime.
Sat, 25 Dec 2004
[ 17:52 knu ] Original commit 
1.16 biology/ruby-bio/Makefile
1.14 biology/ruby-bio/distinfo
1.12 biology/ruby-bio/pkg-plist
Update to 0.6.2.
Tue, 6 Jul 2004
[ 14:31 vs ] Original commit 
1.15 biology/ruby-bio/Makefile
Fix distsite

PR:             ports/67473
Submitted by:   Roman Neuhauser
Approved by:    maintainer timeout
Tue, 14 Oct 2003
[ 22:25 knu ] Original commit 
1.14 biology/ruby-bio/Makefile
1.12 biology/ruby-bio/distinfo
1.11 biology/ruby-bio/pkg-plist
Update to 0.5.3.
Fri, 22 Aug 2003
[ 22:53 knu ] Original commit 
1.13 biology/ruby-bio/Makefile
1.11 biology/ruby-bio/distinfo
1.10 biology/ruby-bio/pkg-plist
Update to 0.5.2.
Tue, 29 Jul 2003
[ 06:44 knu ] Original commit 
1.12 biology/ruby-bio/Makefile
1.10 biology/ruby-bio/distinfo
Update to 0.5.1.
Thu, 26 Jun 2003
[ 03:34 knu ] Original commit 
1.11 biology/ruby-bio/Makefile
1.9 biology/ruby-bio/distinfo
1.9 biology/ruby-bio/pkg-plist
Update to 0.5.0.
Tue, 18 Feb 2003
[ 04:22 knu ] Original commit 
1.10 biology/ruby-bio/Makefile
1.2 biology/ruby-bio/pkg-comment
De-pkg-comment.
Wed, 29 Jan 2003
[ 10:45 knu ] Original commit 
1.9 biology/ruby-bio/Makefile
1.8 biology/ruby-bio/distinfo
1.8 biology/ruby-bio/pkg-plist
Update to 0.4.0.
Sun, 6 Oct 2002
[ 20:59 knu ] Original commit 
1.8 biology/ruby-bio/Makefile
1.7 biology/ruby-bio/pkg-plist
Use RUBY_MOD*.
Sat, 3 Aug 2002
[ 07:02 knu ] Original commit 
1.7 biology/ruby-bio/Makefile
1.7 biology/ruby-bio/distinfo
1.6 biology/ruby-bio/pkg-plist
Update to 0.3.9.
Sun, 7 Jul 2002
[ 18:21 knu ] Original commit 
1.6 biology/ruby-bio/Makefile
1.6 biology/ruby-bio/distinfo
1.5 biology/ruby-bio/pkg-plist
Update to 0.3.8.
Wed, 10 Apr 2002
[ 18:37 knu ] Original commit 
1.5 biology/ruby-bio/Makefile
1.5 biology/ruby-bio/distinfo
Update to 0.3.6.
Tue, 12 Mar 2002
[ 23:12 knu ] Original commit 
1.4 biology/ruby-bio/Makefile
1.4 biology/ruby-bio/distinfo
1.4 biology/ruby-bio/pkg-plist
Update to 0.3.5.
Fri, 21 Dec 2001
[ 21:25 knu ] Original commit 
unknown biology/ruby-bio/Makefile
unknown biology/ruby-bio/distinfo
unknown biology/ruby-bio/pkg-plist
Update to 0.3.3.    
Wed, 28 Nov 2001
[ 13:46 knu ] Original commit 
unknown biology/ruby-bio/Makefile
unknown biology/ruby-bio/distinfo
unknown biology/ruby-bio/pkg-plist
Update to 0.3.2.    
Wed, 24 Oct 2001
[ 07:21 knu ] Original commit 
unknown biology/ruby-bio/Makefile
unknown biology/ruby-bio/distinfo
unknown biology/ruby-bio/pkg-comment
unknown biology/ruby-bio/pkg-descr
unknown biology/ruby-bio/pkg-plist
Add ruby-bio (BioRuby), an integrated environment for Bioinformatics   written
in Ruby.    

Number of commits found: 35

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