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non port: biology/ruby-bio/Makefile

Number of commits found: 41

Saturday, 14 Jan 2023
23:08 Muhammad Moinur Rahman (bofh) search for other commits by this committer
Mk/**ruby.mk: Switch from USE_RUBY=yes to USES=ruby

Switch from Mk/bsd.ruby.mk to Mk/Uses/ruby.mk

Notable changes are.

- Mk/bsd.ruby.mk is moved to Mk/Uses/ruby.mk.
- USE_RUBY=yes is replaced with USES=ruby.
- USE_RUBY_EXTCONF is replaced with USES=ruby:extconf.
- USE_RUBY_RDOC is replaced with USES=ruby:rdoc.
- USE_RUBY_SETUP is replaces with USES=ruby:setup.
- RUBY_NO_BUILD_DEPENDS and RUBY_NO_RUN_DEPENDS are replaced with
  USES=ruby:{build,none,run}.
- RUBY_REQUIRE isn't used anywhere, so removed.
- USES=gem now implies USES=ruby.

This is mainly the work of yasu@ at https://reviews.freebsd.org/D27863

I have just made some cosmetic changes and ran exp-run to test that the
tree is not in a BROKEN state.

Approved by:	portmgr
Differential Revision:	https://reviews.freebsd.org/D37925
commit hash: 18c6e18276691edf5274406bf82a3b06792ff9ae commit hash: 18c6e18276691edf5274406bf82a3b06792ff9ae commit hash: 18c6e18276691edf5274406bf82a3b06792ff9ae commit hash: 18c6e18276691edf5274406bf82a3b06792ff9ae 18c6e18
Wednesday, 7 Sep 2022
21:10 Stefan Eßer (se) search for other commits by this committer
Add WWW entries to port Makefiles

It has been common practice to have one or more URLs at the end of the
ports' pkg-descr files, one per line and prefixed with "WWW:". These
URLs should point at a project website or other relevant resources.

Access to these URLs required processing of the pkg-descr files, and
they have often become stale over time. If more than one such URL was
present in a pkg-descr file, only the first one was tarnsfered into
the port INDEX, but for many ports only the last line did contain the
port specific URL to further information.

There have been several proposals to make a project URL available as
a macro in the ports' Makefiles, over time.

This commit implements such a proposal and moves one of the WWW: entries
of each pkg-descr file into the respective port's Makefile. A heuristic
attempts to identify the most relevant URL in case there is more than
one WWW: entry in some pkg-descr file. URLs that are not moved into the
Makefile are prefixed with "See also:" instead of "WWW:" in the pkg-descr
files in order to preserve them.

There are 1256 ports that had no WWW: entries in pkg-descr files. These
ports will not be touched in this commit.

The portlint port has been adjusted to expect a WWW entry in each port
Makefile, and to flag any remaining "WWW:" lines in pkg-descr files as
deprecated.

Approved by:		portmgr (tcberner)
commit hash: b7f05445c00f2625aa19b4154ebcbce5ed2daa52 commit hash: b7f05445c00f2625aa19b4154ebcbce5ed2daa52 commit hash: b7f05445c00f2625aa19b4154ebcbce5ed2daa52 commit hash: b7f05445c00f2625aa19b4154ebcbce5ed2daa52 b7f0544
Wednesday, 20 Jul 2022
14:20 Tobias C. Berner (tcberner) search for other commits by this committer
biology: remove 'Created by' lines

A big Thank You to the original contributors of these ports:

  *  Aaron Dalton <aaron@FreeBSD.org>
  *  Akinori MUSHA aka knu <knu@idaemons.org>
  *  Andrey Zakhvatov
  *  Bob Zimmermann <rpz@cse.wustl.edu>
  *  Camson Huynh <chuynh@biolateral.com.au>
  *  Dan Siercks <dsiercks@uwm.edu>
  *  Fernan Aguero <fernan@iib.unsam.edu.ar>
  *  Hannes Hauswedell <h2+fbsdports@fsfe.org>
  *  J. Bacon <jwb@FreeBSD.org>
  *  Jason Bacon <jwb@FreeBSD.org>
  *  Jeremy <karlj000@unbc.ca>
  *  Johann Visagie <johann@egenetics.com>
  *  Johann Visagie <wjv@FreeBSD.org>
  *  Mauricio Herrera Cuadra <mauricio@arareko.net>
  *  Motomichi Matsuzaki <mzaki@biol.s.u-tokyo.ac.jp>
  *  Motomichi Matsuzaki <mzaki@e-mail.ne.jp>
  *  Motomichi Matsuzaki <mzaki@m.u-tokyo.ac.jp>
  *  Motomichi Matsuzaki <mzaki@niid.go.jp>
  *  Po-Chuan Hsieh <sunpoet@FreeBSD.org>
  *  Razi Khaja <razi@genet.sickkids.on.ca>
  *  Reed A. Cartwright <cartwright@asu.edu>
  *  Ryo MIYAMOTO
  *  Ryo MIYAMOTO <rmiya@cc.hirosaki-u.ac.jp>
  *  Sangwoo Shim <sangwoos@gmail.com>
  *  Sunpoet Po-Chuan Hsieh <sunpoet@FreeBSD.org>
  *  Tassilo Philipp <tphilipp@potion-studios.com>
  *  Tony Maher
  *  Tony Maher <tonym@biolateral.com.au>
  *  Wen Heping <wen@FreeBSD.org>
  *  Wen Heping <wenheping@gmail.com>
  *  Yonatan <onatan@gmail.com>
  *  Yuri Victorovich <yuri@rawbw.com>
  *  ballen
  *  barnhart@genetics.wustl.edu
  *  camson@bilateral.com.au
  *  chuynh@biolateral.com.au
  *  dbader@eece.unm.edu
  *  frankch@waru.life.nthu.edu.tw
  *  h2
  *  lentferj
  *  maho@FreeBSD.org
  *  mzaki@biol.s.u-tokyo.ac.jp
  *  tonym
  *  wen@FreeBSD.org

With hat:	portmgr
commit hash: 37526bbd4e50616d87f70e1c788ae4895d88d671 commit hash: 37526bbd4e50616d87f70e1c788ae4895d88d671 commit hash: 37526bbd4e50616d87f70e1c788ae4895d88d671 commit hash: 37526bbd4e50616d87f70e1c788ae4895d88d671 37526bb
Monday, 10 Jan 2022
15:15 Stefan Eßer (se) search for other commits by this committer
Fix CONFLICTS entries of multiple ports

There have been lots of missing CONFLICTS_INSTALL entries, either
because conflicting ports were added without updating existing ports,
due to name changes of generated packages, due to mis-understanding
the format and semantics of the conflicts entries, or just due to
typoes in package names.

This patch is the result of a comparison of all files contained in
the official packages with each other. This comparison was based on
packages built with default options and may therefore have missed
further conflicts with optionally installed files.

Where possible, version numbers in conflicts entries have been
generalized, some times taking advantage of the fact that a port
cannot conflict with itself (due to logic in bsd.port.mk that
supresses the pattern match result in that case).

A few ports that set the conflicts variables depending on complex
conditions (e.g. port options), have been left unmodified, despite
probably containing outdated package names.

These changes should only affect the installation of locally built
ports, not the package building with poudriere. They should give an
early indication of the install conflict in cases where currently
the pkg command aborts an installation when it detects that an
existing file would be overwritten,

Approved by:	portmgr (implicit)
commit hash: bcaf25a8c8046b094f6b5ab5bc258333bc326ee1 commit hash: bcaf25a8c8046b094f6b5ab5bc258333bc326ee1 commit hash: bcaf25a8c8046b094f6b5ab5bc258333bc326ee1 commit hash: bcaf25a8c8046b094f6b5ab5bc258333bc326ee1 bcaf25a
Tuesday, 6 Apr 2021
14:31 Mathieu Arnold (mat) search for other commits by this committer
Remove # $FreeBSD$ from Makefiles.
commit hash: 305f148f482daf30dcf728039d03d019f88344eb commit hash: 305f148f482daf30dcf728039d03d019f88344eb commit hash: 305f148f482daf30dcf728039d03d019f88344eb commit hash: 305f148f482daf30dcf728039d03d019f88344eb 305f148
Tuesday, 5 May 2020
14:22 rene search for other commits by this committer
biology/ruby-bio: remove expired optional dependency on textproc/ruby-xmlparser
Original commitRevision:534089 
Sunday, 7 May 2017
15:44 miwi search for other commits by this committer
- Update to 1.5.1
Original commitRevision:440343 
Friday, 1 Apr 2016
13:29 mat search for other commits by this committer
Remove ${PORTSDIR}/ from dependencies, Mk and categories a, b, and c.

With hat:	portmgr
Sponsored by:	Absolight
Original commitRevision:412344 
Thursday, 31 Mar 2016
17:36 amdmi3 search for other commits by this committer
- Update to 1.5.0

PR:		208351
Submitted by:	wen@FreeBSD.org
Approved by:	mauricio@arareko.net (maintainer)
Original commitRevision:412278 
Sunday, 17 Jan 2016
07:06 swills search for other commits by this committer
mark ports that don't work with Ruby 2.3

PR:		205774
Original commitRevision:406285 
Saturday, 10 Oct 2015
23:15 sunpoet search for other commits by this committer
- Fix typo

Approved by:	portmgr (blanket)
Original commitRevision:399072 
Thursday, 3 Sep 2015
16:23 sunpoet search for other commits by this committer
- Add LICENSE
- Add NO_ARCH
- Use BROKEN_RUBY22
- While I'm here, use single space after WWW:

Approved by:	portmgr (blanket)
With hat:	ruby
Original commitRevision:395991 
Monday, 17 Aug 2015
14:20 mat search for other commits by this committer
Remove UNIQUENAME and LATEST_LINK.

UNIQUENAME was never unique, it was only used by USE_LDCONFIG and now,
we won't have conflicts there.

Use PKGBASE instead of LATEST_LINK in PKGLATESTFILE, the *only* consumer
is pkg-devel, and it works just fine without LATEST_LINK as pkg-devel
has the correct PKGNAME anyway.

Now that UNIQUENAME is gone, OPTIONSFILE is too. (it's been called
OPTIONS_FILE now.)

Reviewed by:	antoine, bapt
Exp-run by:	antoine
Sponsored by:	Absolight
Differential Revision:	https://reviews.freebsd.org/D3336
Original commitRevision:394508 
Friday, 3 Apr 2015
13:50 swills search for other commits by this committer
biology/ruby-bio: mark broken with ruby 2.2
Original commitRevision:383123 
Sunday, 21 Sep 2014
13:44 dinoex search for other commits by this committer
- any version for RUN_DEPENDS
Original commitRevision:368754 
09:51 dinoex search for other commits by this committer
- update RUN_DEPENDS for rubygems-dbi
Original commitRevision:368736 
Monday, 7 Apr 2014
13:01 bapt search for other commits by this committer
Support stage
Original commitRevision:350461 
Wednesday, 15 Jan 2014
22:52 bapt search for other commits by this committer
Reduce over inclusion of bsd.port.mk
Original commitRevision:339846 
Friday, 20 Sep 2013
15:55 bapt search for other commits by this committer
Add NO_STAGE all over the place in preparation for the staging support (cat:
biology)
Original commitRevision:327709 
Monday, 18 Mar 2013
06:55 jgh search for other commits by this committer
- adoption of optionsNG
- trim historical header

Approved by:	portmgr (miwi)
Original commitRevision:314532 
Monday, 27 Dec 2010
15:11 pgollucci search for other commits by this committer
- Update to 1.4.1
- Remove MD5

PR:             ports/153394
Submitted by:   myself (pgollucci)
Approved by:    mauricio@arareko.net (maintainer)
Sponsored by:   RideCharge Inc. / TaxiMagic
Original commit
Tuesday, 8 Jun 2010
00:18 pgollucci search for other commits by this committer
- Update to 1.4.0
- Sort pkg-plist
- seperate NOPORTDOCS and NOPORTEXAMPLES
Original commit
Wednesday, 24 Oct 2007
01:38 clsung search for other commits by this committer
- Update to 1.1.0

PR:             ports/117369
Submitted by:   Motomichi Matsuzaki <mzaki_AT_e-mail dot ne dot jp>
Approved by:    maintainer (Mauricio Herrera Cuadra)
Original commit
Tuesday, 25 Apr 2006
22:09 pav search for other commits by this committer
- Update to 1.0.0
- Provide OPTIONS
- Take maintainership

PR:             ports/94123
Submitted by:   Mauricio Herrera Cuadra <mauricio@arareko.net>
Original commit
Friday, 11 Nov 2005
01:18 linimon search for other commits by this committer
With portmgr hat on, reset maintainership of knu's ports since he has
been inactive more than 6 months.  We hope to see him back sometime.
Original commit
Saturday, 25 Dec 2004
17:52 knu search for other commits by this committer
Update to 0.6.2.
Original commit
Tuesday, 6 Jul 2004
14:31 vs search for other commits by this committer
Fix distsite

PR:             ports/67473
Submitted by:   Roman Neuhauser
Approved by:    maintainer timeout
Original commit
Tuesday, 14 Oct 2003
22:25 knu search for other commits by this committer
Update to 0.5.3.
Original commit
Friday, 22 Aug 2003
22:53 knu search for other commits by this committer
Update to 0.5.2.
Original commit
Tuesday, 29 Jul 2003
06:44 knu search for other commits by this committer
Update to 0.5.1.
Original commit
Thursday, 26 Jun 2003
03:34 knu search for other commits by this committer
Update to 0.5.0.
Original commit
Tuesday, 18 Feb 2003
04:22 knu search for other commits by this committer
De-pkg-comment.
Original commit
Wednesday, 29 Jan 2003
10:45 knu search for other commits by this committer
Update to 0.4.0.
Original commit
Sunday, 6 Oct 2002
20:59 knu search for other commits by this committer
Use RUBY_MOD*.
Original commit
Saturday, 3 Aug 2002
07:02 knu search for other commits by this committer
Update to 0.3.9.
Original commit
Sunday, 7 Jul 2002
18:21 knu search for other commits by this committer
Update to 0.3.8.
Original commit
Wednesday, 10 Apr 2002
18:37 knu search for other commits by this committer
Update to 0.3.6.
Original commit
Tuesday, 12 Mar 2002
23:12 knu search for other commits by this committer
Update to 0.3.5.
Original commit
Friday, 21 Dec 2001
21:25 knu search for other commits by this committer
Update to 0.3.3.    
Original commit
Wednesday, 28 Nov 2001
13:46 knu search for other commits by this committer
Update to 0.3.2.    
Original commit
Wednesday, 24 Oct 2001
07:21 knu search for other commits by this committer
Add ruby-bio (BioRuby), an integrated environment for Bioinformatics   written
in Ruby.    
Original commit

Number of commits found: 41