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non port: biology/samtools/Makefile
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Number of commits found: 10

Thu, 2 Aug 2018
[ 19:28 fernape ] Original commit   Revision:476246
476246 biology/samtools/Makefile
476246 biology/samtools/distinfo
biology/samtools: update to 1.9

PR:	230171
Submitted by:	ndowens.fbsd@yandex.com
Approved by:	tcberner (mentor)
Differential Revision:	https://reviews.freebsd.org/D16569
Mon, 4 Dec 2017
[ 15:27 mat ] Original commit   Revision:455518
455518 Mk/Uses/python.mk
455518 biology/bcftools/Makefile
455518 biology/samtools/Makefile
455518 security/metasploit/Makefile
Add a USES=python:env, that will not add a dependency on Python.

It has the same effect than setting PYTHON_NO_DEPENDS, but in a more
compact way.

Sponsored by:	Absolight
Wed, 25 Oct 2017
[ 10:19 pizzamig ] Original commit   Revision:452840
452840 biology/bcftools/Makefile
452840 biology/bcftools/distinfo
452840 biology/bcftools/files/patch-Makefile
452840 biology/bcftools/files/patch-configure.ac
452840 biology/bcftools/files/patch-misc_run-roh.pl
452840 biology/bcftools/files/patch-prob1.c
452840 biology/bcftools/files/patch-test_test.pl
452840 biology/bcftools/files/pkg-message.in
452840 biology/bcftools/pkg-plist
452840 biology/htslib/Makefile

(Only the first 10 of 25 ports in this commit are shown above. View all ports for this commit)
biology/htslib biology/bcftools biology/samtools: Update to 1.6

PR:		223094
Submitted by:	mzaki@niid.go.jp
Approved by:	cartwright@asu.edu (maintainer)
Approved by:	olivier (mentor)
Differential Revision:	https://reviews.freebsd.org/D12768
Thu, 26 May 2016
[ 20:28 pi ] Original commit   Revision:415914
415914 biology/bcftools/Makefile
415914 biology/bcftools/distinfo
415914 biology/bcftools/pkg-plist
415914 biology/htslib/Makefile
415914 biology/htslib/distinfo
415914 biology/samtools/Makefile
415914 biology/samtools/distinfo
415914 biology/samtools/files/patch-Makefile
biology/{htslib|samtools|bcftools}: 1.3 -> 1.3.1

Changes:
  https://sourceforge.net/p/samtools/mailman/message/35033807/

PR:		209653
Submitted by:	cartwright@asu.edu (maintainer)
Fri, 1 Apr 2016
[ 13:29 mat ] Original commit   Revision:412344
412344 Mk/Uses/gecko.mk
412344 Mk/bsd.fpc.mk
412344 Mk/bsd.gecko.mk
412344 Mk/bsd.port.mk
412344 accessibility/accerciser/Makefile
412344 accessibility/at-spi/Makefile
412344 accessibility/at-spi2-atk/Makefile
412344 accessibility/at-spi2-core/Makefile
412344 accessibility/caribou/Makefile
412344 accessibility/dasher/Makefile

(Only the first 10 of 1009 ports in this commit are shown above. View all ports for this commit)
Remove ${PORTSDIR}/ from dependencies, Mk and categories a, b, and c.

With hat:	portmgr
Sponsored by:	Absolight
Mon, 1 Feb 2016
[ 21:59 marino ] Original commit   Revision:407776
407776 biology/samtools/Makefile
biology/samtools: document ncurses requirement (USES+=ncurses)

approved by:	infrastructure blanket
Fri, 25 Dec 2015
[ 01:31 junovitch ] Original commit   Revision:404398
404398 biology/bcftools/Makefile
404398 biology/bcftools/distinfo
404398 biology/bcftools/files/patch-Makefile
404398 biology/bcftools/files/patch-plugins_fixploidy.mk
404398 biology/bcftools/files/patch-plugins_vcf2sex.mk
404398 biology/bcftools/files/patch-prob1.c
404398 biology/bcftools/files/patch-test_test.pl
404398 biology/bcftools/files/pkg-message.in
404398 biology/bcftools/pkg-plist
404398 biology/htslib/Makefile

(Only the first 10 of 27 ports in this commit are shown above. View all ports for this commit)
biology/{bcftools,htslib,samtools}: update 1.2.x -> 1.3

- Update ports to 1.3 and set BUILD_DEPENDS of dependent ports to require
  version 1.3 of htslib.
- Add CURL option to htslib
- Add TEST_TARGET with perl and bash dependencies for testing
- Tidy up spacing and pkg-message's

PR:		205524
PR:		205525
PR:		205526
Submitted by:	cartwright@asu.edu (maintainer)
Wed, 6 May 2015
[ 15:16 mat ] Original commit   Revision:385521
385521 benchmarks/flowgrind/Makefile
385521 benchmarks/flowgrind/distinfo
385521 biology/htslib/Makefile
385521 biology/htslib/distinfo
385521 biology/samtools/Makefile
385521 biology/samtools/distinfo
385521 cad/cura-engine/Makefile
385521 cad/cura-engine/distinfo
385521 cad/elmerfem/Makefile
385521 cad/elmerfem/distinfo

(Only the first 10 of 348 ports in this commit are shown above. View all ports for this commit)
Update ports in the [bcd]* categories to not use GH_COMMIT.

With minor cleanups to make things simpler.

With hat:	portmgr
Sponsored by:	Absolight
Fri, 6 Mar 2015
[ 12:53 robak ] Original commit   Revision:380597
380597 biology/samtools/Makefile
380597 biology/samtools/distinfo
biology/samtools: update 1.1 -> 1.2

PR:		198292
Submitted by:	Reed Cartwright <cartwright@asu.edu>
Mon, 15 Dec 2014
[ 21:59 pawel ] Original commit   Revision:374767
374767 biology/Makefile
374767 biology/samtools
374767 biology/samtools/Makefile
374767 biology/samtools/distinfo
374767 biology/samtools/files
374767 biology/samtools/files/patch-Makefile
374767 biology/samtools/files/patch-errmod.c
374767 biology/samtools/files/pkg-message.in
374767 biology/samtools/pkg-descr
374767 biology/samtools/pkg-plist
Samtools implements various utilities for post-processing alignments in the
SAM, BAM, and CRAM formats, including indexing, variant calling (in conjunction
with bcftools), and a simple alignment viewer.

WWW: http://www.htslib.org/

PR:		195592
Submitted by:	Reed A. Cartwright <cartwright@asu.edu>

Number of commits found: 10

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