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non port: biology/samtools/distinfo

Number of commits found: 15

Friday, 24 Feb 2023
23:27 Jason W. Bacon (jwb) search for other commits by this committer
biology/samtools: Update to 1.17

Numerous enhancements and bug fixes

Changes: https://github.com/samtools/samtools/releases

Reported by:    portscout
commit hash: 1993bfc7cf7d933c1a8cc11bf2198ce8691a0d76 commit hash: 1993bfc7cf7d933c1a8cc11bf2198ce8691a0d76 commit hash: 1993bfc7cf7d933c1a8cc11bf2198ce8691a0d76 commit hash: 1993bfc7cf7d933c1a8cc11bf2198ce8691a0d76 1993bfc
Thursday, 5 Jan 2023
23:17 Jason W. Bacon (jwb) search for other commits by this committer
biology/samtools: Update to 1.16.1

New "reference" subcommand to extract CRAM features (1.16)
Numerous minor enhancements and bug fixes

Changes: https://github.com/samtools/samtools/releases
commit hash: 193567cc9e20e9ecb305506d92f522fc77dd18e4 commit hash: 193567cc9e20e9ecb305506d92f522fc77dd18e4 commit hash: 193567cc9e20e9ecb305506d92f522fc77dd18e4 commit hash: 193567cc9e20e9ecb305506d92f522fc77dd18e4 193567c
Saturday, 26 Feb 2022
15:04 Jason W. Bacon (jwb) search for other commits by this committer
biology/samtools: Update to 1.15

Several small enhancements and a few bug fixes
Changes: https://github.com/samtools/samtools/releases

Reported by:    portscout
commit hash: 822ec7476b36d4a004c88067044432fbc29ca9f4 commit hash: 822ec7476b36d4a004c88067044432fbc29ca9f4 commit hash: 822ec7476b36d4a004c88067044432fbc29ca9f4 commit hash: 822ec7476b36d4a004c88067044432fbc29ca9f4 822ec74
Saturday, 18 Dec 2021
17:56 Jason W. Bacon (jwb) search for other commits by this committer
biology/samtools: Update to 1.14

Several enhancements and minor bug fixes

Changes: https://github.com/samtools/samtools/tags
commit hash: d0228a8a5f1c2b80211af892f32847ff4edb241f commit hash: d0228a8a5f1c2b80211af892f32847ff4edb241f commit hash: d0228a8a5f1c2b80211af892f32847ff4edb241f commit hash: d0228a8a5f1c2b80211af892f32847ff4edb241f d0228a8
Monday, 12 Jul 2021
13:24 Jason W. Bacon (jwb) search for other commits by this committer
biology/samtools: Update to 1.13

Numerous enhancements and bug fixes

Changes:        https://github.com/samtools/samtools/releases/tag/1.13
commit hash: 1c1b4943aef7525da9e15fb8f419c08e2f8849bf commit hash: 1c1b4943aef7525da9e15fb8f419c08e2f8849bf commit hash: 1c1b4943aef7525da9e15fb8f419c08e2f8849bf commit hash: 1c1b4943aef7525da9e15fb8f419c08e2f8849bf 1c1b494
Saturday, 20 Mar 2021
17:14 jwb search for other commits by this committer
biology/htslib: Update to 1.12
biology/samtools: Update to 1.12
biology/bcftools: Update to 1.12

Numerous enhancements, performance improvements, and bug fixes since 1.11

Build-tested all other htslib dependents, no revbumps should be needed

Reported by:    portscout
Original commitRevision:568874 
Thursday, 5 Nov 2020
20:32 jwb search for other commits by this committer
biology/samtools: Upgrade to 1.11

Numerous new features, bug fixes and performance enhancements
https://github.com/samtools/samtools/releases/tag/1.11

Reported by:    portscout
Original commitRevision:554156 
Monday, 3 Aug 2020
18:22 jwb search for other commits by this committer
biology/samtools: Upgrade to 1.10

Numerous bug fixes and enhancements:
https://github.com/samtools/samtools/releases/tag/1.10

Take maintainership per ports/248089

PR:             ports/248089
Original commitRevision:544098 
Thursday, 2 Aug 2018
19:28 fernape search for other commits by this committer
biology/samtools: update to 1.9

PR:	230171
Submitted by:	ndowens.fbsd@yandex.com
Approved by:	tcberner (mentor)
Differential Revision:	https://reviews.freebsd.org/D16569
Original commitRevision:476246 
Wednesday, 25 Oct 2017
10:19 pizzamig search for other commits by this committer
biology/htslib biology/bcftools biology/samtools: Update to 1.6

PR:		223094
Submitted by:	mzaki@niid.go.jp
Approved by:	cartwright@asu.edu (maintainer)
Approved by:	olivier (mentor)
Differential Revision:	https://reviews.freebsd.org/D12768
Original commitRevision:452840 
Thursday, 26 May 2016
20:28 pi search for other commits by this committer
biology/{htslib|samtools|bcftools}: 1.3 -> 1.3.1

Changes:
  https://sourceforge.net/p/samtools/mailman/message/35033807/

PR:		209653
Submitted by:	cartwright@asu.edu (maintainer)
Original commitRevision:415914 
Friday, 25 Dec 2015
01:31 junovitch search for other commits by this committer
biology/{bcftools,htslib,samtools}: update 1.2.x -> 1.3

- Update ports to 1.3 and set BUILD_DEPENDS of dependent ports to require
  version 1.3 of htslib.
- Add CURL option to htslib
- Add TEST_TARGET with perl and bash dependencies for testing
- Tidy up spacing and pkg-message's

PR:		205524
PR:		205525
PR:		205526
Submitted by:	cartwright@asu.edu (maintainer)
Original commitRevision:404398 
Wednesday, 6 May 2015
15:16 mat search for other commits by this committer
Update ports in the [bcd]* categories to not use GH_COMMIT.

With minor cleanups to make things simpler.

With hat:	portmgr
Sponsored by:	Absolight
Original commitRevision:385521 
Friday, 6 Mar 2015
12:53 robak search for other commits by this committer
biology/samtools: update 1.1 -> 1.2

PR:		198292
Submitted by:	Reed Cartwright <cartwright@asu.edu>
Original commitRevision:380597 
Monday, 15 Dec 2014
21:59 pawel search for other commits by this committer
Samtools implements various utilities for post-processing alignments in the
SAM, BAM, and CRAM formats, including indexing, variant calling (in conjunction
with bcftools), and a simple alignment viewer.

WWW: http://www.htslib.org/

PR:		195592
Submitted by:	Reed A. Cartwright <cartwright@asu.edu>
Original commitRevision:374767 

Number of commits found: 15