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non port: biology/samtools/distinfo

Number of commits found: 10

Sat, 20 Mar 2021
[ 17:14 jwb ] Original commit   Revision:568874(Only the first 10 of 17 ports in this commit are shown above. View all ports for this commit)
biology/htslib: Update to 1.12
biology/samtools: Update to 1.12
biology/bcftools: Update to 1.12

Numerous enhancements, performance improvements, and bug fixes since 1.11

Build-tested all other htslib dependents, no revbumps should be needed

Reported by:    portscout
Thu, 5 Nov 2020
[ 20:32 jwb ] Original commit   Revision:554156
biology/samtools: Upgrade to 1.11

Numerous new features, bug fixes and performance enhancements

Reported by:    portscout
Mon, 3 Aug 2020
[ 18:22 jwb ] Original commit   Revision:544098
biology/samtools: Upgrade to 1.10

Numerous bug fixes and enhancements:

Take maintainership per ports/248089

PR:             ports/248089
Thu, 2 Aug 2018
[ 19:28 fernape ] Original commit   Revision:476246
biology/samtools: update to 1.9

PR:	230171
Submitted by:
Approved by:	tcberner (mentor)
Differential Revision:
Wed, 25 Oct 2017
[ 10:19 pizzamig ] Original commit   Revision:452840(Only the first 10 of 25 ports in this commit are shown above. View all ports for this commit)
biology/htslib biology/bcftools biology/samtools: Update to 1.6

PR:		223094
Submitted by:
Approved by: (maintainer)
Approved by:	olivier (mentor)
Differential Revision:
Thu, 26 May 2016
[ 20:28 pi ] Original commit   Revision:415914
biology/{htslib|samtools|bcftools}: 1.3 -> 1.3.1


PR:		209653
Submitted by: (maintainer)
Fri, 25 Dec 2015
[ 01:31 junovitch ] Original commit   Revision:404398(Only the first 10 of 27 ports in this commit are shown above. View all ports for this commit)
biology/{bcftools,htslib,samtools}: update 1.2.x -> 1.3

- Update ports to 1.3 and set BUILD_DEPENDS of dependent ports to require
  version 1.3 of htslib.
- Add CURL option to htslib
- Add TEST_TARGET with perl and bash dependencies for testing
- Tidy up spacing and pkg-message's

PR:		205524
PR:		205525
PR:		205526
Submitted by: (maintainer)
Wed, 6 May 2015
[ 15:16 mat ] Original commit   Revision:385521(Only the first 10 of 348 ports in this commit are shown above. View all ports for this commit)
Update ports in the [bcd]* categories to not use GH_COMMIT.

With minor cleanups to make things simpler.

With hat:	portmgr
Sponsored by:	Absolight
Fri, 6 Mar 2015
[ 12:53 robak ] Original commit   Revision:380597
biology/samtools: update 1.1 -> 1.2

PR:		198292
Submitted by:	Reed Cartwright <>
Mon, 15 Dec 2014
[ 21:59 pawel ] Original commit   Revision:374767
Samtools implements various utilities for post-processing alignments in the
SAM, BAM, and CRAM formats, including indexing, variant calling (in conjunction
with bcftools), and a simple alignment viewer.


PR:		195592
Submitted by:	Reed A. Cartwright <>

Number of commits found: 10