| Port details on branch 2022Q3 |
- scrm Coalescent simulator for biological sequences
- 1.7.4_1 biology
 =0      1.7.4_1Version of this port present on the latest quarterly branch. - Maintainer: yuri@FreeBSD.org
- Port Added: 2020-05-15 04:58:32
- Last Update: 2024-03-02 19:59:23
- Commit Hash: 7552b02
- License: GPLv3
- WWW:
- https://scrm.github.io/
- Description:
- scrm simulates the evolution of genetic sequences. It takes a neutral
evolutionary model as input, and generates random sequences that evolved under
the model. As coalescent simulator, it traces the ancestry of the sampled
sequences backwards in time and is therefore extremely efficient. Compared to
other coalescent simulators, it can simulate chromosome-scale sequences without
a measureable reduction of genetic linkage between different sites.
  ¦  ¦  ¦  ¦ 
- Manual pages:
- FreshPorts has no man page information for this port.
- pkg-plist: as obtained via:
make generate-plist - Dependency lines:
-
- To install the port:
- cd /usr/ports/biology/scrm/ && make install clean
- To add the package, run one of these commands:
- pkg install biology/scrm
- pkg install scrm
NOTE: If this package has multiple flavors (see below), then use one of them instead of the name specified above.- PKGNAME: scrm
- Flavors: there is no flavor information for this port.
- distinfo:
- TIMESTAMP = 1589518122
SHA256 (scrm-scrm-v1.7.4_GH0.tar.gz) = 13f4b0febabcdf6a2b478693febd2fb9d3f47532fb39ffaa4f01fe816f69ceb7
SIZE (scrm-scrm-v1.7.4_GH0.tar.gz) = 341612
Packages (timestamps in pop-ups are UTC):
- Dependencies
- NOTE: FreshPorts displays only information on required and default dependencies. Optional dependencies are not covered.
- Build dependencies:
-
- gmake>=4.3 : devel/gmake
- autoconf>=2.71 : devel/autoconf
- automake>=1.16.5 : devel/automake
- There are no ports dependent upon this port
Configuration Options:- No options to configure
- Options name:
- biology_scrm
- USES:
- autoreconf compiler:c++11-lang gmake
- FreshPorts was unable to extract/find any pkg message
- Master Sites:
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