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non port: biology/seqan/Makefile
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Number of commits found: 20

Fri, 29 Oct 2021
[ 09:50 Stefan E├čer (se) search for other commits by this committer ]    commit hash:819f25b36d45b8ac5593ec8e6f470d9ad454b08a  819f25b  (Only the first 10 of 388 ports in this commit are shown above. View all ports for this commit)
*/*: Remove redundant '-[0-9]*' from CONFLICTS

The conflict checks compare the patterns first against the package
names without version (as reported by "pkg query "%n"), then - if
there was no match - agsinst the full package names including the
version (as reported by "pkg query "%n-%v").

Many CONFLICTS definitions used patterns like "bash-[0-9]*" to filter
for the bash package in any version. But that pattern is functionally
identical with just "bash".

Approved by:	portmgr (blanket)
Tue, 6 Apr 2021
[ 14:31 Mathieu Arnold (mat) search for other commits by this committer ]    commit hash:305f148f482daf30dcf728039d03d019f88344eb  305f148  (Only the first 10 of 29333 ports in this commit are shown above. View all ports for this commit)
Remove # $FreeBSD$ from Makefiles.
Sat, 10 Mar 2018
[ 06:21 yuri search for other commits by this committer ] Original commit   Revision:464043
biology/seqan-apps, biology/seqan: Update to 2.4.0

Port changes for biology/seqan-apps:
* Changed to DISTVERSION
* Updated COMMENT
* Added USES=compiler:openmp
* Removed BROKEN_xx (upstream now claims support for these architectures)
* Removed USE_GCC
* Added SSE4/AVX2/NATIVE SIMD options

Port changes for biology/seqan:
* Changed to DISTVERSION
* Added NO_ARCH
* Added PORTDOCS=*
* Updated do-install

PR:		225682
Submitted by:	Hannes Hauswedell <h2+fbsdports@fsfe.org> (maintainer)
Approved by:	tcberner (mentor, implicit)
Wed, 14 Sep 2016
[ 19:38 pawel search for other commits by this committer ] Original commit   Revision:422156
- Update biology/seqan and bilogy/seqan-apps to version 2.2.0 [1]
- Fix spelling in pkg-descr

PR:		212682 [1]
Submitted by:	Hannes Hauswedell (maintainer) [1]
Fri, 27 May 2016
[ 16:10 amdmi3 search for other commits by this committer ] Original commit   Revision:415945
- Do install cmake and pkgconfig modules
- While here, switch to options helpers

PR:		209710
Submitted by:	h2+fbsdports@fsfe.org (maintainer)
Tue, 10 May 2016
[ 01:05 junovitch search for other commits by this committer ] Original commit   Revision:414898 (Only the first 10 of 12 ports in this commit are shown above. View all ports for this commit)
biology/seqan: update 1.3.1 -> 2.1.1
biology/seqan1: create port from current SeqAn 1.3.1 for legacy usage
UPDATING: document SeqAn updates and seqan1 port for legacy usage

PR:		204127
Submitted by:	Hannes Hauswedell <h2+fbsdports@fsfe.org>
Sat, 21 Mar 2015
[ 11:53 marino search for other commits by this committer ] Original commit   Revision:381791
biology/segan: Limit GCC to 4.8 while waiting for update

Due to questionable c++, GCC 4.9 and newer cannot build seqan.  An update
has been in the works that will enable clang compilers and all versions
of GCC to build seqan, but it is not quite ready yet.  While waiting for
it, limit the version of GCC used to 4.8.

PR:	196851
Sun, 19 Oct 2014
[ 07:38 mva search for other commits by this committer ] Original commit   Revision:371171
- Convert ports from benchmarks/ and biology/ to new USES=python

Approved by:	portmgr (implicit)
Wed, 10 Sep 2014
[ 20:50 gerald search for other commits by this committer ] Original commit   Revision:367888 (Only the first 10 of 3171 ports in this commit are shown above. View all ports for this commit)
Update the default version of GCC in the Ports Collection from GCC 4.7.4
to GCC 4.8.3.

Part II, Bump PORTREVISIONs.

PR:		192025
Tested by:	antoine (-exp runs)
Approved by:	portmgr (implicit)
Thu, 10 Jul 2014
[ 22:29 adamw search for other commits by this committer ] Original commit   Revision:361497
Use gcc on all platforms.

PR:		191692
Submitted by:	maintainer
Sun, 1 Jun 2014
[ 11:42 ohauer search for other commits by this committer ] Original commit   Revision:356100
- add stage support
- adjust BSDn license
Mon, 10 Mar 2014
[ 20:55 gerald search for other commits by this committer ] Original commit   Revision:347809 (Only the first 10 of 1081 ports in this commit are shown above. View all ports for this commit)
Update the default version of GCC used in the Ports Collection from
GCC 4.6.4 to GCC 4.7.3.  This entails updating the lang/gcc port as
well as changing the default in Mk/bsd.default-versions.mk.

Part II, Bump PORTREVISIONs.

PR:		182136
Supported by:	Christoph Moench-Tegeder <cmt@burggraben.net> (fixing many ports)
Tested by:	bdrewery (two -exp runs)
Fri, 7 Mar 2014
[ 15:52 bapt search for other commits by this committer ] Original commit   Revision:347402
Convert b* to USES=zip
Sat, 26 Oct 2013
[ 00:52 gerald search for other commits by this committer ] Original commit   Revision:331644 (Only the first 10 of 1147 ports in this commit are shown above. View all ports for this commit)
Update to libmpc version 1.0.1 which brings the following fixes:

 - Switched to automake 1.11.6, see CVE-2012-3386.
 - #14669: Fixed extraction of CC from gmp.h.
 - Fixed case of intermediate zero real or imaginary part in mpc_fma,
   found by hydra with GMP_CHECK_RANDOMIZE=1346362345.

This is on top of the following changes from version 1.0

 - Licence change towards LGPLv3+ for the code and GFDLv1.3+ (with no
   invariant sections) for the documentation.
 - 100% of all lines are covered by tests
 - Renamed functions
   . mpc_mul_2exp to mpc_mul_2ui
   . mpc_div_2exp to mpc_div_2ui
(Only the first 15 lines of the commit message are shown above View all of this commit message)
Fri, 20 Sep 2013
[ 15:55 bapt search for other commits by this committer ] Original commit   Revision:327709 (Only the first 10 of 94 ports in this commit are shown above. View all ports for this commit)
Add NO_STAGE all over the place in preparation for the staging support (cat:
biology)
Sat, 17 Aug 2013
[ 16:27 gerald search for other commits by this committer ] Original commit   Revision:324851 (Only the first 10 of 93 ports in this commit are shown above. View all ports for this commit)
Replace USE_GCC=4.6+ and USE_GCC=4.4+ by USE_GCC=yes.

Right now this is a noop in the former case and a noop in the latter
case unless lang/gcc44 has been installed explicitly.

This puts a bit more emphasis on standardizing on a canonical version
"current" GCC and makes it easier to update that canonical version
by changing the default in Mk/bsd.gcc.mk and updating the lang/gcc port.

That is, USE_GCC=yes means "use a decent/modern version of GCC" without
having to worry about details.

Approved by:	portmgr (bdrewery)
Fri, 22 Mar 2013
[ 20:06 makc search for other commits by this committer ] Original commit   Revision:314960 (Only the first 10 of 464 ports in this commit are shown above. View all ports for this commit)
- convert USE_CMAKE to USES
- while here clean up some ports from CMAKE_VERBOSE, which is intended
  for users

Approved by:	portmgr (miwi)
Sat, 21 Jul 2012
[ 22:20 gerald search for other commits by this committer ] Original commit 
Replace USE_GCC=4.4+ by USE_GCC=4.6+ since GCC 4.4 is on its way out.

Approved by:	maintainer
Thu, 7 Jun 2012
[ 13:04 amdmi3 search for other commits by this committer ] Original commit 
- Fix maintainer email

Submitted by:   maintainer via private email
Wed, 6 Jun 2012
[ 17:51 amdmi3 search for other commits by this committer ] Original commit 
SeqAn is an open source C++ library of efficient algorithms
and data structures for the analysis of sequences with the
focus on biological data. The library is licensed under the
3-clause BSD license except the applications which are GPL.

WWW: http://www.seqan.de/

PR:             167571
Submitted by:   Hannes <h2+fbsdports@fsfe.org>

Number of commits found: 20