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The cause of the slowdown was a change to the ZFS dataset. In conjunction with the database server, very little caching was being done. This combination resulted in increased disk I/O as the system churned through the database. Details in the blog post which outlines the various things which changed. Many graphs.

non port: biology/seqio/Makefile
SVNWeb

Number of commits found XX: 10

Sun, 26 Nov 2017
[ 09:00 amdmi3 ] Original commit   Revision:454906
454906 biology/seqio/Makefile
- Switch to options helpers
Sun, 16 Feb 2014
[ 11:42 ehaupt ] Original commit   Revision:344538
344538 biology/seqio/Makefile
Support staging
Fri, 20 Sep 2013
[ 15:55 bapt ] Original commit   Revision:327709
327709 biology/ariadne/Makefile
327709 biology/artemis/Makefile
327709 biology/avida/Makefile
327709 biology/babel/Makefile
327709 biology/biococoa/Makefile
327709 biology/biojava/Makefile
327709 biology/blast/Makefile
327709 biology/blat/Makefile
327709 biology/boinc-simap/Makefile
327709 biology/chemeq/Makefile

(Only the first 10 of 94 ports in this commit are shown above. View all ports for this commit)
Add NO_STAGE all over the place in preparation for the staging support (cat:
biology)
Wed, 19 Jun 2013
[ 13:30 bsam ] Original commit   Revision:321248
321248 biology/seqio/Makefile
Forced commit to show previous changes:
-----
. NOPORTDOCS -> PORT_OPTIONS:MDOCS;
. NOPORTEXAMPLES -> PORT_OPTIONS:MEXAMPLES;
. use PLIST_FILES, PORTEXAMPLES and PORTDOCS;
. get rid of pkg-plist;
. use plain install commands instead of .for loops;
. remove unnecessary mkdir command (the following one creates a subdirectory);
. mute mkdirs;
. trim Makefile headers;
. remove the indefinite article from COMMENT.
-----
[ 13:09 bsam ] Original commit   Revision:321246
321246 biology/seqio/Makefile
Index: Makefile
===================================================================
--- Makefile	(revision 321238)
+++ Makefile	(working copy)
@@ -1,9 +1,5 @@
-# New ports collection makefile for:	seqio
-# Date created:				17 August 2001
-# Whom:					Tony Maher
-#
+# Created by: Tony Maher
 # $FreeBSD$
-#

 PORTNAME=	seqio
 PORTVERSION=	1.2.2
(Only the first 15 lines of the commit message are shown above View all of this commit message)
Sat, 12 Jul 2008
[ 06:28 itetcu ] Original commit 
1.5 biology/seqio/Makefile
1.3 biology/seqio/pkg-plist
- respect NOPORTEXAMPLES/NOPORTDOCS and fix plist
- bump PORTREVISION

Prompted by:    QA Tindy run
Tue, 26 Dec 2006
[ 12:46 linimon ] Original commit 
1.6 biology/crimap/Makefile
1.8 biology/dna-qc/Makefile
1.9 biology/primer3/Makefile
1.4 biology/seqio/Makefile
1.8 biology/wise/Makefile
1.7 math/xgobi/Makefile
1.22 net/generic-nqs/Makefile
1.10 science/mayavi/Makefile
Reset tonymaher@optusnet.com.au due to maintainer-timeouts and no response
to email.

Hat:            portmgr
Mon, 9 Jan 2006
[ 03:25 edwin ] Original commit 
1.4 biology/crimap/Makefile
1.6 biology/dna-qc/Makefile
1.7 biology/flip/Makefile
1.7 biology/primer3/Makefile
1.3 biology/seqio/Makefile
1.6 biology/wise/Makefile
1.5 math/xgobi/Makefile
1.19 net/generic-nqs/Makefile
Fix maintainer address

    From: Tony Maher <anthony.maher@uts.edu.au>
    To: Edwin Groothuis <edwin@FreeBSD.org>
    Subject: Re: ports/91537: maths/xgobi - download site moved/maintainer
addressupdate

    Actually I need  modify all my ports to use OptusNet rather than
    Biolateral.  Is there an easy way to do this or should I submit a
    separate 1-line patch and PR for each port?

    biology/crimap
    biology/dna-qc
    biology/flip
    biology/primer3
    biology/seqio
    biology/wise
    math/xgobi
    net/generic-nqs

Submitted by:   Tony Maher <anthony.maher@uts.edu.au>
Fri, 21 Feb 2003
[ 11:01 knu ] Original commit 
1.4 biology/L-Breeder/Makefile
1.2 biology/L-Breeder/pkg-comment
1.2 biology/act/Makefile
1.2 biology/act/pkg-comment
1.2 biology/artemis/Makefile
1.2 biology/artemis/pkg-comment
1.4 biology/avida/Makefile
1.2 biology/avida/pkg-comment
1.4 biology/biojava/Makefile
1.2 biology/biojava/pkg-comment

(Only the first 10 of 72 ports in this commit are shown above. View all ports for this commit)
De-pkg-comment.
Wed, 22 Aug 2001
[ 13:07 wjv ] Original commit 
unknown biology/seqio/Makefile
unknown biology/seqio/distinfo
unknown biology/seqio/files/patch-Makefile
unknown biology/seqio/files/patch-fmtseq
unknown biology/seqio/files/patch-grepseq
unknown biology/seqio/files/patch-seqio
unknown biology/seqio/pkg-comment
unknown biology/seqio/pkg-descr
unknown biology/seqio/pkg-plist
Add seqio 1.2.2, a set of C functions which can read/write   biological sequence
files.    

Number of commits found XX: 10

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