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non port: biology/seqtools/pkg-plist

Number of commits found: 6

Sunday, 31 Jul 2016
14:19 pi search for other commits by this committer
biology/seqtools: 4.42.1 -> 4.43.0

 
ftp://ftp.sanger.ac.uk/pub4/resources/software/seqtools/PRODUCTION/release_notes.html

- Mark broken on 9.x: Fails to build due to C++ std issues
Original commitRevision:419380 
Monday, 14 Mar 2016
19:40 pi search for other commits by this committer
biology/seqtools: 4.40.0 -> 4.41.1

- mostly internal changes, some build fixes
Original commitRevision:411109 
Wednesday, 6 May 2015
20:30 pi search for other commits by this committer
biology/seqtools: 4.33 -> 4.34.1

Blixem
- Added functionality to shift-select a range of coordinates,
  and copy the reference/match sequence for that range.
- DNA search now highlights the resultant range of coordinates.
- Added a splitter bar to allow the variations track to be resized.
- Dotter
  Fix a crash pressing Esc on an undocked alignment or greyramp tool.
- All
  Code reorganisation: the codebase is now in C++ rather than C,
  and a new module 'gbtools' has been created for generic
  utility functions.
Original commitRevision:385561 
Wednesday, 15 Oct 2014
18:46 pi search for other commits by this committer
biology/seqtools: 4.28 -> 4.29

- Blixem
  o Added the facility to run Dotter on an ad-hoc sequence (RT:408836).
  o Added the facility to run Dotter against a transcript.
- Dotter
  Minimise the greyramp tool to a simple contrast slider. Use
  Ctrl-G to toggle between this and the full greyramp tool.
- Belvu
  Fix a bug with tree bootstrapping in Belvu.
Original commitRevision:370943 
Wednesday, 12 Feb 2014
14:03 mat search for other commits by this committer
Fix old makeplist bug.

Pointy hat to:	people who blindly use makeplist
Sponsored by:	Absolight
Original commitRevision:343923 
Sunday, 10 Nov 2013
11:01 wg search for other commits by this committer
biology/seqtools: Tools for visualising sequence alignments

Blixem is an interactive browser of pairwise alignments that have
been stacked up in a "master-slave" multiple alignment; it is not
a 'true' multiple alignment but a 'one-to-many' alignment.

Belvu is a multiple sequence alignment viewer and phylogenetic tool.

Dotter is a graphical dot-matrix program for detailed comparison
of two sequences.

WWW: http://www.sanger.ac.uk/resources/software/seqtools/

PR:		ports/183801
Submitted by:	Kurt Jaeger <fbsd-ports opsec.eu>
Original commitRevision:333374 

Number of commits found: 6