FreshPorts -- The Place For Ports If you buy from Amazon USA, please support us by using this link.
Follow us

We also have a status page:

non port: biology/seqtools/pkg-plist

Number of commits found: 6

Sun, 31 Jul 2016
[ 14:19 pi ] Original commit   Revision:419380
419380 biology/seqtools/Makefile
419380 biology/seqtools/distinfo
419380 biology/seqtools/pkg-plist
biology/seqtools: 4.42.1 -> 4.43.0

- Mark broken on 9.x: Fails to build due to C++ std issues
Mon, 14 Mar 2016
[ 19:40 pi ] Original commit   Revision:411109
411109 biology/seqtools/Makefile
411109 biology/seqtools/distinfo
411109 biology/seqtools/pkg-plist
biology/seqtools: 4.40.0 -> 4.41.1

- mostly internal changes, some build fixes
Wed, 6 May 2015
[ 20:30 pi ] Original commit   Revision:385561
385561 biology/seqtools/Makefile
385561 biology/seqtools/distinfo
385561 biology/seqtools/pkg-plist
biology/seqtools: 4.33 -> 4.34.1

- Added functionality to shift-select a range of coordinates,
  and copy the reference/match sequence for that range.
- DNA search now highlights the resultant range of coordinates.
- Added a splitter bar to allow the variations track to be resized.
- Dotter
  Fix a crash pressing Esc on an undocked alignment or greyramp tool.
- All
  Code reorganisation: the codebase is now in C++ rather than C,
  and a new module 'gbtools' has been created for generic
  utility functions.
Wed, 15 Oct 2014
[ 18:46 pi ] Original commit   Revision:370943
370943 biology/seqtools/Makefile
370943 biology/seqtools/distinfo
370943 biology/seqtools/pkg-plist
biology/seqtools: 4.28 -> 4.29

- Blixem
  o Added the facility to run Dotter on an ad-hoc sequence (RT:408836).
  o Added the facility to run Dotter against a transcript.
- Dotter
  Minimise the greyramp tool to a simple contrast slider. Use
  Ctrl-G to toggle between this and the full greyramp tool.
- Belvu
  Fix a bug with tree bootstrapping in Belvu.
Wed, 12 Feb 2014
[ 14:03 mat ] Original commit   Revision:343923
343923 biology/seqtools/Makefile
343923 biology/seqtools/pkg-plist
343923 databases/dbtool/Makefile
343923 databases/dbtool/pkg-plist
343923 games/gnubg/Makefile
343923 games/gnubg/pkg-plist
343923 games/pengpong/Makefile
343923 games/pengpong/pkg-plist
343923 games/seabattle/Makefile
343923 games/seabattle/pkg-plist

(Only the first 10 of 20 ports in this commit are shown above. View all ports for this commit)
Fix old makeplist bug.

Pointy hat to:	people who blindly use makeplist
Sponsored by:	Absolight
Sun, 10 Nov 2013
[ 11:01 wg ] Original commit   Revision:333374
333374 MOVED
333374 biology/Makefile
333374 biology/dotter
333374 biology/seqtools
333374 biology/seqtools/Makefile
333374 biology/seqtools/distinfo
333374 biology/seqtools/pkg-descr
333374 biology/seqtools/pkg-plist
biology/seqtools: Tools for visualising sequence alignments

Blixem is an interactive browser of pairwise alignments that have
been stacked up in a "master-slave" multiple alignment; it is not
a 'true' multiple alignment but a 'one-to-many' alignment.

Belvu is a multiple sequence alignment viewer and phylogenetic tool.

Dotter is a graphical dot-matrix program for detailed comparison
of two sequences.


PR:		ports/183801
Submitted by:	Kurt Jaeger <fbsd-ports>

Number of commits found: 6

User Login
Create account

Servers and bandwidth provided by
New York Internet, SuperNews, and RootBSD

This site
What is FreshPorts?
About the authors
How big is it?
The latest upgrade!

Enter Keywords:

Latest Vulnerabilities
opensslNov 02
openssl-develNov 02
wordpressNov 01
php56Oct 30
php70Oct 30
php71Oct 30
wiresharkOct 30
chromiumOct 28
wgetOct 27
wgetOct 27
openoffice-4*Oct 26
openoffice-devel*Oct 26
gitlabOct 25
nodeOct 25
node4Oct 25

No vulnerabilities have been reported in the past 14 days

* - modified, not new

All vulnerabilities

Deleted ports
Sanity Test Failures

NEW Graphs (Javascript)

Calculated hourly:
Port count 31886
Broken 126
Deprecated 57
Ignore 364
Forbidden 0
Restricted 175
Vulnerable 50
Expired 24
Set to expire 49
Interactive 0
new 24 hours 10
new 48 hours13
new 7 days3157
new fortnight3236
new month3395

Servers and bandwidth provided by
New York Internet, SuperNews, and RootBSD
Valid HTML, CSS, and RSS.
Copyright © 2000-2017 Dan Langille. All rights reserved.