[ 14:19 pi  ]

• 419380 biology/seqtools/Makefile
• 419380 biology/seqtools/distinfo
• 419380 biology/seqtools/pkg-plist

biology/seqtools: 4.42.1 -> 4.43.0

 
ftp://ftp.sanger.ac.uk/pub4/resources/software/seqtools/PRODUCTION/release_notes.html

- Mark broken on 9.x: Fails to build due to C++ std issues

[ 19:40 pi  ]

• 411109 biology/seqtools/Makefile
• 411109 biology/seqtools/distinfo
• 411109 biology/seqtools/pkg-plist

biology/seqtools: 4.40.0 -> 4.41.1

- mostly internal changes, some build fixes

[ 20:30 pi  ]

• 385561 biology/seqtools/Makefile
• 385561 biology/seqtools/distinfo
• 385561 biology/seqtools/pkg-plist

biology/seqtools: 4.33 -> 4.34.1

Blixem
- Added functionality to shift-select a range of coordinates,
  and copy the reference/match sequence for that range.
- DNA search now highlights the resultant range of coordinates.
- Added a splitter bar to allow the variations track to be resized.
- Dotter
  Fix a crash pressing Esc on an undocked alignment or greyramp tool.
- All
  Code reorganisation: the codebase is now in C++ rather than C,
  and a new module 'gbtools' has been created for generic
  utility functions.

[ 18:46 pi  ]

• 370943 biology/seqtools/Makefile
• 370943 biology/seqtools/distinfo
• 370943 biology/seqtools/pkg-plist

biology/seqtools: 4.28 -> 4.29

- Blixem
  o Added the facility to run Dotter on an ad-hoc sequence (RT:408836).
  o Added the facility to run Dotter against a transcript.
- Dotter
  Minimise the greyramp tool to a simple contrast slider. Use
  Ctrl-G to toggle between this and the full greyramp tool.
- Belvu
  Fix a bug with tree bootstrapping in Belvu.

[ 14:03 mat  ]

• 343923 biology/seqtools/Makefile
• 343923 biology/seqtools/pkg-plist
• 343923 databases/dbtool/Makefile
• 343923 databases/dbtool/pkg-plist
• 343923 games/gnubg/Makefile
• 343923 games/gnubg/pkg-plist
• 343923 games/pengpong/Makefile
• 343923 games/pengpong/pkg-plist
• 343923 games/seabattle/Makefile
• 343923 games/seabattle/pkg-plist

Fix old makeplist bug.

Pointy hat to:	people who blindly use makeplist
Sponsored by:	Absolight

[ 11:01 wg  ]

• 333374 MOVED
• 333374 biology/Makefile
• 333374 biology/dotter
• 333374 biology/seqtools
• 333374 biology/seqtools/Makefile
• 333374 biology/seqtools/distinfo
• 333374 biology/seqtools/pkg-descr
• 333374 biology/seqtools/pkg-plist

biology/seqtools: Tools for visualising sequence alignments

Blixem is an interactive browser of pairwise alignments that have
been stacked up in a "master-slave" multiple alignment; it is not
a 'true' multiple alignment but a 'one-to-many' alignment.

Belvu is a multiple sequence alignment viewer and phylogenetic tool.

Dotter is a graphical dot-matrix program for detailed comparison
of two sequences.

WWW: http://www.sanger.ac.uk/resources/software/seqtools/

PR:		ports/183801
Submitted by:	Kurt Jaeger <fbsd-ports opsec.eu>