Port details on branch 2022Q3 |
- smithwaterman Smith-waterman-gotoh alignment algorithm
- g20160702 biology =1 g20160702Version of this port present on the latest quarterly branch.
- Maintainer: jwb@FreeBSD.org
- Port Added: 2018-04-15 17:46:20
- Last Update: 2022-09-07 21:58:51
- Commit Hash: fb16dfe
- License: GPLv2
- WWW:
- https://github.com/ekg/smithwaterman
- Description:
- The Smith-Waterman algorithm performs local sequence alignment; that is, for
determining similar regions between two strings of nucleic acid sequences or
protein sequences. Instead of looking at the entire sequence, the
Smith-Waterman algorithm compares segments of all possible lengths and
optimizes the similarity measure. Gotoh and Atschul added optimizations making
it practical for larger problems.
- ¦ ¦ ¦ ¦
- Manual pages:
- FreshPorts has no man page information for this port.
- pkg-plist: as obtained via:
make generate-plist - Dependency lines:
-
- smithwaterman>0:biology/smithwaterman
- To install the port:
- cd /usr/ports/biology/smithwaterman/ && make install clean
- To add the package, run one of these commands:
- pkg install biology/smithwaterman
- pkg install smithwaterman
NOTE: If this package has multiple flavors (see below), then use one of them instead of the name specified above.- PKGNAME: smithwaterman
- Flavors: there is no flavor information for this port.
- distinfo:
- TIMESTAMP = 1523600109
SHA256 (ekg-smithwaterman-g20160702-2610e259611ae4cde8f03c72499d28f03f6d38a7_GH0.tar.gz) = 8e1b37ab0e8cd9d3d5cbfdba80258c0ebd0862749b531e213f44cdfe2fc541d8
SIZE (ekg-smithwaterman-g20160702-2610e259611ae4cde8f03c72499d28f03f6d38a7_GH0.tar.gz) = 39190
Packages (timestamps in pop-ups are UTC):
- Dependencies
- NOTE: FreshPorts displays only information on required and default dependencies. Optional dependencies are not covered.
- Build dependencies:
-
- gmake>=4.3 : devel/gmake
- There are no ports dependent upon this port
Configuration Options:
- No options to configure
- Options name:
- biology_smithwaterman
- USES:
- gmake
- FreshPorts was unable to extract/find any pkg message
- Master Sites:
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