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SVNWeb
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Number of commits found: 8 |
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Thu, 10 Aug 2023
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[ 17:17 Jason W. Bacon (jwb)  ]    0f2f80c (Only the first 10 of 69 ports in this commit are shown above.  )
biology/sra-tools: Update to 3.0.6
Major code and build system rework since 2.11
Now supports aarch64, unblocking rna-seq and atac-seq metaports
Changes: https://github.com/ncbi/sra-tools/commits/master
Reported by: portscout
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Sun, 23 Apr 2023
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[ 09:09 Gerald Pfeifer (gerald) ] 8d3e020 (Only the first 10 of 2091 ports in this commit are shown above. )
*: Bump PORTREVISIONs for math/mpc update to 1.3.1
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Wed, 7 Sep 2022
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[ 21:10 Stefan Eßer (se) ] b7f0544 (Only the first 10 of 27931 ports in this commit are shown above. )
Add WWW entries to port Makefiles
It has been common practice to have one or more URLs at the end of the
ports' pkg-descr files, one per line and prefixed with "WWW:". These
URLs should point at a project website or other relevant resources.
Access to these URLs required processing of the pkg-descr files, and
they have often become stale over time. If more than one such URL was
present in a pkg-descr file, only the first one was tarnsfered into
the port INDEX, but for many ports only the last line did contain the
port specific URL to further information.
There have been several proposals to make a project URL available as
a macro in the ports' Makefiles, over time.
(Only the first 15 lines of the commit message are shown above )
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Wed, 20 Jul 2022
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[ 14:35 Tobias C. Berner (tcberner) ] 5564b3b (Only the first 10 of 87 ports in this commit are shown above. )
science/hdf5: bump PORTREVISION of consumers
The SO-version increased in the update to 1.12.2 in
a43418b81530f7e897abfbe18dd59f44265a1a0f .
Reported by: VVD <vvd@unislabs.com>
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Sun, 10 Apr 2022
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[ 19:11 Charlie Li (vishwin) ] d63665f (Only the first 10 of 892 ports in this commit are shown above. )
textproc/libxml2: bump all LIB_DEPENDS consumers
This is a separate commit to facilitate easier cherry-picking for
quarterly.
PR: 262853, 262940, 262877, 263126
Approved by: fluffy (mentor)
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Sat, 26 Mar 2022
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[ 08:27 Matthias Fechner (mfechner) ] 247c7db (Only the first 10 of 867 ports in this commit are shown above. )
textproc/libxml2: bump all dependencies
This should make sure that all dependent ports will pick
up the new version commited with a13ec21cd733f67a9fc0dc00ab45268bdc236246
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Mon, 10 Jan 2022
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[ 15:15 Stefan Eßer (se) ] bcaf25a (Only the first 10 of 491 ports in this commit are shown above. )
Fix CONFLICTS entries of multiple ports
There have been lots of missing CONFLICTS_INSTALL entries, either
because conflicting ports were added without updating existing ports,
due to name changes of generated packages, due to mis-understanding
the format and semantics of the conflicts entries, or just due to
typoes in package names.
This patch is the result of a comparison of all files contained in
the official packages with each other. This comparison was based on
packages built with default options and may therefore have missed
further conflicts with optionally installed files.
Where possible, version numbers in conflicts entries have been
generalized, some times taking advantage of the fact that a port (Only the first 15 lines of the commit message are shown above )
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Tue, 22 Jun 2021
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[ 17:55 Jason W. Bacon (jwb) ] 69656bf (Only the first 10 of 45 ports in this commit are shown above. )
biology/sra-tools: NCBI's toolkit for handling data in INSDC Sequence Read
Archives
SRA tools is a toolkit for using data in the INSDC Sequence Read Archives.
SRAs operated by International Nucleotide Sequence Database Collaboration
houses sequence reads and alignments generated by "next-gen" sequencers.
This port is a bit convoluted due to the fact that the sra-tools build
requires access to the ncbi-vdb source tree. Hence, ncbi-vdb is treated
as a submodule here rather than a separate library port. We are working
with upstream with hope for long-term improvements.
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Number of commits found: 8 |
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