Port details on branch 2022Q3 |
- ssaha Very fast matching and alignment of DNA sequences
- 3.1c_6 biology
=0 3.1c_6Version of this port present on the latest quarterly branch.
- BROKEN: No public distfiles
DEPRECATED: Broken for more than 6 months This port expired on: 2018-06-06 IGNORE: is marked as broken: No public distfiles
- There is no maintainer for this port.
- Any concerns regarding this port should be directed to the FreeBSD Ports mailing list via ports@FreeBSD.org
- Port Added: 2008-06-21 00:02:14
- Last Update: 2018-06-07 00:34:18
- SVN Revision: 471892
- License: not specified in port
- WWW:
- http://www.sanger.ac.uk/resources/software/ssaha/
- Description:
- SSAHA is a software tool for very fast matching and alignment of DNA
sequences. It stands for Sequence Search and Alignment by Hashing
Algorithm. It achieves its fast search speed by converting sequence
information into a `hash table' data structure, which can then be
searched very rapidly for matches.
SSAHA: a fast search method for large DNA databases (2001).
Ning Z, Cox AJ, Mullikin JC. Genome Res. 11: 1725-9.
PMID: 11591649
WWW: http://www.sanger.ac.uk/resources/software/ssaha/
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- pkg-plist: as obtained via:
make generate-plist - Dependency lines:
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- No installation instructions:
- This port has been deleted.
- PKGNAME: ssaha
- Flavors: there is no flavor information for this port.
- distinfo:
- SHA256 (ssaha_v31c.tar.gz) = 63fa38ccd2725db6ba10881f8cc94d899afd2eba9c2f6436223d9284c5abfced
SIZE (ssaha_v31c.tar.gz) = 251510
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- Dependencies
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- Build dependencies:
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- gmake : devel/gmake
- gcc6 : lang/gcc6
- as : devel/binutils
- Runtime dependencies:
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- gcc6 : lang/gcc6
- There are no ports dependent upon this port
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- USES:
- gmake
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