Port details on branch 2022Q3 |
- tRNAscan-SE Searching for tRNA genes in genomic sequence
- 2.0.11 biology =0 2.0.11Version of this port present on the latest quarterly branch.
- Maintainer: mzaki@e-mail.ne.jp
- Port Added: 2002-03-27 14:19:04
- Last Update: 2022-10-12 11:45:24
- Commit Hash: 5a4350d
- License: GPLv3+
- WWW:
- http://lowelab.ucsc.edu/tRNAscan-SE/
- Description:
- tRNAscan-SE was written in the PERL (version 5.0) script language.
Input consists of DNA or RNA sequences in FASTA format. tRNA
predictions are output in standard tabular or ACeDB format.
tRNAscan-SE does no tRNA detection itself, but instead combines the
strengths of three independent tRNA prediction programs by negotiating
the flow of information between them, performing a limited amount of
post-processing, and outputting the results in one of several
formats.
- ¦ ¦ ¦ ¦
- Manual pages:
- FreshPorts has no man page information for this port.
- pkg-plist: as obtained via:
make generate-plist - Dependency lines:
-
- tRNAscan-SE>0:biology/tRNAscan-SE
- To install the port:
- cd /usr/ports/biology/tRNAscan-SE/ && make install clean
- To add the package, run one of these commands:
- pkg install biology/tRNAscan-SE
- pkg install tRNAscan-SE
NOTE: If this package has multiple flavors (see below), then use one of them instead of the name specified above.- PKGNAME: tRNAscan-SE
- Flavors: there is no flavor information for this port.
- distinfo:
- TIMESTAMP = 1665480264
SHA256 (trnascan-se-2.0.11.tar.gz) = 29b74edd0f84ad88139035e119b66397c54a37428e0b61c66a1b3d4733adcd1e
SIZE (trnascan-se-2.0.11.tar.gz) = 4430973
Packages (timestamps in pop-ups are UTC):
- Dependencies
- NOTE: FreshPorts displays only information on required and default dependencies. Optional dependencies are not covered.
- Build dependencies:
-
- autoconf>=2.71 : devel/autoconf
- automake>=1.16.5 : devel/automake
- perl5>=5.32.r0<5.33 : lang/perl5.32
- Runtime dependencies:
-
- cmsearch : biology/infernal
- perl5>=5.32.r0<5.33 : lang/perl5.32
- There are no ports dependent upon this port
Configuration Options:
- No options to configure
- Options name:
- biology_tRNAscan-SE
- USES:
- autoreconf perl5
- FreshPorts was unable to extract/find any pkg message
- Master Sites:
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