non port: biology/tRNAscan-SE/Makefile |
Number of commits found: 24 |
Wednesday, 12 Oct 2022
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11:45 Nuno Teixeira (eduardo) Author: Motomichi Matsuzaki
biology/tRNAscan-SE: Update to 2.0.11
ChangeLog: http://lowelab.ucsc.edu/tRNAscan-SE/change_log.txt
PR: 266966
5a4350d |
Wednesday, 7 Sep 2022
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21:10 Stefan Eßer (se)
Add WWW entries to port Makefiles
It has been common practice to have one or more URLs at the end of the
ports' pkg-descr files, one per line and prefixed with "WWW:". These
URLs should point at a project website or other relevant resources.
Access to these URLs required processing of the pkg-descr files, and
they have often become stale over time. If more than one such URL was
present in a pkg-descr file, only the first one was tarnsfered into
the port INDEX, but for many ports only the last line did contain the
port specific URL to further information.
There have been several proposals to make a project URL available as
a macro in the ports' Makefiles, over time.
This commit implements such a proposal and moves one of the WWW: entries
of each pkg-descr file into the respective port's Makefile. A heuristic
attempts to identify the most relevant URL in case there is more than
one WWW: entry in some pkg-descr file. URLs that are not moved into the
Makefile are prefixed with "See also:" instead of "WWW:" in the pkg-descr
files in order to preserve them.
There are 1256 ports that had no WWW: entries in pkg-descr files. These
ports will not be touched in this commit.
The portlint port has been adjusted to expect a WWW entry in each port
Makefile, and to flag any remaining "WWW:" lines in pkg-descr files as
deprecated.
Approved by: portmgr (tcberner)
b7f0544 |
Wednesday, 20 Jul 2022
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14:20 Tobias C. Berner (tcberner)
biology: remove 'Created by' lines
A big Thank You to the original contributors of these ports:
* Aaron Dalton <aaron@FreeBSD.org>
* Akinori MUSHA aka knu <knu@idaemons.org>
* Andrey Zakhvatov
* Bob Zimmermann <rpz@cse.wustl.edu>
* Camson Huynh <chuynh@biolateral.com.au>
* Dan Siercks <dsiercks@uwm.edu>
* Fernan Aguero <fernan@iib.unsam.edu.ar>
* Hannes Hauswedell <h2+fbsdports@fsfe.org>
* J. Bacon <jwb@FreeBSD.org>
* Jason Bacon <jwb@FreeBSD.org>
* Jeremy <karlj000@unbc.ca>
* Johann Visagie <johann@egenetics.com>
* Johann Visagie <wjv@FreeBSD.org>
* Mauricio Herrera Cuadra <mauricio@arareko.net>
* Motomichi Matsuzaki <mzaki@biol.s.u-tokyo.ac.jp>
* Motomichi Matsuzaki <mzaki@e-mail.ne.jp>
* Motomichi Matsuzaki <mzaki@m.u-tokyo.ac.jp>
* Motomichi Matsuzaki <mzaki@niid.go.jp>
* Po-Chuan Hsieh <sunpoet@FreeBSD.org>
* Razi Khaja <razi@genet.sickkids.on.ca>
* Reed A. Cartwright <cartwright@asu.edu>
* Ryo MIYAMOTO
* Ryo MIYAMOTO <rmiya@cc.hirosaki-u.ac.jp>
* Sangwoo Shim <sangwoos@gmail.com>
* Sunpoet Po-Chuan Hsieh <sunpoet@FreeBSD.org>
* Tassilo Philipp <tphilipp@potion-studios.com>
* Tony Maher
* Tony Maher <tonym@biolateral.com.au>
* Wen Heping <wen@FreeBSD.org>
* Wen Heping <wenheping@gmail.com>
* Yonatan <onatan@gmail.com>
* Yuri Victorovich <yuri@rawbw.com>
* ballen
* barnhart@genetics.wustl.edu
* camson@bilateral.com.au
* chuynh@biolateral.com.au
* dbader@eece.unm.edu
* frankch@waru.life.nthu.edu.tw
* h2
* lentferj
* maho@FreeBSD.org
* mzaki@biol.s.u-tokyo.ac.jp
* tonym
* wen@FreeBSD.org
With hat: portmgr
37526bb |
Tuesday, 6 Apr 2021
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14:31 Mathieu Arnold (mat)
Remove # $FreeBSD$ from Makefiles.
305f148 |
Monday, 13 Jan 2020
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17:36 fernape
biology/tRNAscan-SE: update to 2.0.5
This commit also changes maintainer's email.
PR: 243248
Submitted by: mzaki@e-mail.ne.jp (maintainer)
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Saturday, 8 Jun 2019
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01:31 swills
biology/tRNAscan-SE: Update to 2.0.3
PR: 238253
Submitted by: Motomichi Matsuzaki <mzaki@niid.go.jp>
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Thursday, 30 May 2019
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07:39 pkubaj
biology/tRNAscan-SE: fix build with GCC-based architecturs
Add MAKE_JOBS_UNSAFE=yes to fix build.
Remove USES=compiler:c11, it's not necessary.
PR: 237848
Approved by: mzaki@niid.go.jp (maintainer), linimon (mentor)
Differential Revision: https://reviews.freebsd.org/D20439
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Tuesday, 7 May 2019
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19:45 pkubaj
biology/tRNAscan-SE: fix build with GCC-based architectures
Add USES=compiler:c11 to fix build.
Approved by: mentors (implicit approval)
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Friday, 28 Sep 2018
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00:12 wen
- Unbreak by adding missing pkg-plist
PR: 228758
Submitted by: mzaki@niid.go.jp(maintainer)
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Friday, 29 Jun 2018
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12:43 antoine
Mark BROKEN: missing plist
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Wednesday, 6 Jun 2018
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15:20 krion
Update to 2.0.0 and pass maintainership to committer.
PR: 228758
Submitted by: Motomichi Matsuzaki <mzaki@niid.go.jp>
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Saturday, 5 May 2018
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10:49 antoine
Deprecate ports broken for more than 6 months
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Friday, 13 Oct 2017
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11:14 bapt
Mark as broken ports with no public distfiles
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Tuesday, 29 Jul 2014
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19:11 adamw
Convert a bunch of EXTRACT_SUFX=... into USES=tar:...
Approved by: portmgr (not really, but touches unstaged ports)
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Monday, 5 May 2014
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10:26 bapt
Support stage
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Friday, 20 Sep 2013
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15:55 bapt
Add NO_STAGE all over the place in preparation for the staging support (cat:
biology)
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Saturday, 3 Aug 2013
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08:45 az
- Convert to new perl framework
- Trim Makefile header
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Wednesday, 19 Jun 2013
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19:20 bsam
. NOPORTDOCS -> PORT_OPTIONS:MDOCS;
. pet portlint: use {} instaed of () at variable;
. use PLIST_FILES, PORTDATA and PORTDOCS at Makefile;
. get rid of pkg-plist;
. remove article from COMMENT;
. trim Makefile headers.
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Thursday, 22 May 2008
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00:49 miwi
- Update MASTER_SITES and WWW: line
- Support CC/CFLAGS properly
- Strip binary
PR: 123866
Submitted by: Ports Fury
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Thursday, 15 May 2008
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02:50 erwin
Update to 1.23
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Saturday, 10 Mar 2007
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20:20 linimon
Reset chuynh@biolateral.com.au: address bounces.
Hat: portmgr
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Friday, 21 Feb 2003
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11:01 knu
De-pkg-comment.
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Monday, 4 Nov 2002
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01:47 edwin
Port needs perl to build.
Seen on: bento
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Wednesday, 27 Mar 2002
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14:18 wjv
Add tRNAscan-SE 1.21, an improved tool for transfer RNA detection.
PR: 33853
Submitted by: chuynh@biolateral.com.au
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Number of commits found: 24 |