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non port: biology/tRNAscan-SE/Makefile

Number of commits found: 24

Wednesday, 12 Oct 2022
11:45 Nuno Teixeira (eduardo) search for other commits by this committer Author: Motomichi Matsuzaki
biology/tRNAscan-SE: Update to 2.0.11

ChangeLog:	http://lowelab.ucsc.edu/tRNAscan-SE/change_log.txt
PR:		266966
commit hash: 5a4350de941e061def79fb2ab6b6f46d5eb10ad9 commit hash: 5a4350de941e061def79fb2ab6b6f46d5eb10ad9 commit hash: 5a4350de941e061def79fb2ab6b6f46d5eb10ad9 commit hash: 5a4350de941e061def79fb2ab6b6f46d5eb10ad9 5a4350d
Wednesday, 7 Sep 2022
21:10 Stefan E├čer (se) search for other commits by this committer
Add WWW entries to port Makefiles

It has been common practice to have one or more URLs at the end of the
ports' pkg-descr files, one per line and prefixed with "WWW:". These
URLs should point at a project website or other relevant resources.

Access to these URLs required processing of the pkg-descr files, and
they have often become stale over time. If more than one such URL was
present in a pkg-descr file, only the first one was tarnsfered into
the port INDEX, but for many ports only the last line did contain the
port specific URL to further information.

There have been several proposals to make a project URL available as
a macro in the ports' Makefiles, over time.

This commit implements such a proposal and moves one of the WWW: entries
of each pkg-descr file into the respective port's Makefile. A heuristic
attempts to identify the most relevant URL in case there is more than
one WWW: entry in some pkg-descr file. URLs that are not moved into the
Makefile are prefixed with "See also:" instead of "WWW:" in the pkg-descr
files in order to preserve them.

There are 1256 ports that had no WWW: entries in pkg-descr files. These
ports will not be touched in this commit.

The portlint port has been adjusted to expect a WWW entry in each port
Makefile, and to flag any remaining "WWW:" lines in pkg-descr files as
deprecated.

Approved by:		portmgr (tcberner)
commit hash: b7f05445c00f2625aa19b4154ebcbce5ed2daa52 commit hash: b7f05445c00f2625aa19b4154ebcbce5ed2daa52 commit hash: b7f05445c00f2625aa19b4154ebcbce5ed2daa52 commit hash: b7f05445c00f2625aa19b4154ebcbce5ed2daa52 b7f0544
Wednesday, 20 Jul 2022
14:20 Tobias C. Berner (tcberner) search for other commits by this committer
biology: remove 'Created by' lines

A big Thank You to the original contributors of these ports:

  *  Aaron Dalton <aaron@FreeBSD.org>
  *  Akinori MUSHA aka knu <knu@idaemons.org>
  *  Andrey Zakhvatov
  *  Bob Zimmermann <rpz@cse.wustl.edu>
  *  Camson Huynh <chuynh@biolateral.com.au>
  *  Dan Siercks <dsiercks@uwm.edu>
  *  Fernan Aguero <fernan@iib.unsam.edu.ar>
  *  Hannes Hauswedell <h2+fbsdports@fsfe.org>
  *  J. Bacon <jwb@FreeBSD.org>
  *  Jason Bacon <jwb@FreeBSD.org>
  *  Jeremy <karlj000@unbc.ca>
  *  Johann Visagie <johann@egenetics.com>
  *  Johann Visagie <wjv@FreeBSD.org>
  *  Mauricio Herrera Cuadra <mauricio@arareko.net>
  *  Motomichi Matsuzaki <mzaki@biol.s.u-tokyo.ac.jp>
  *  Motomichi Matsuzaki <mzaki@e-mail.ne.jp>
  *  Motomichi Matsuzaki <mzaki@m.u-tokyo.ac.jp>
  *  Motomichi Matsuzaki <mzaki@niid.go.jp>
  *  Po-Chuan Hsieh <sunpoet@FreeBSD.org>
  *  Razi Khaja <razi@genet.sickkids.on.ca>
  *  Reed A. Cartwright <cartwright@asu.edu>
  *  Ryo MIYAMOTO
  *  Ryo MIYAMOTO <rmiya@cc.hirosaki-u.ac.jp>
  *  Sangwoo Shim <sangwoos@gmail.com>
  *  Sunpoet Po-Chuan Hsieh <sunpoet@FreeBSD.org>
  *  Tassilo Philipp <tphilipp@potion-studios.com>
  *  Tony Maher
  *  Tony Maher <tonym@biolateral.com.au>
  *  Wen Heping <wen@FreeBSD.org>
  *  Wen Heping <wenheping@gmail.com>
  *  Yonatan <onatan@gmail.com>
  *  Yuri Victorovich <yuri@rawbw.com>
  *  ballen
  *  barnhart@genetics.wustl.edu
  *  camson@bilateral.com.au
  *  chuynh@biolateral.com.au
  *  dbader@eece.unm.edu
  *  frankch@waru.life.nthu.edu.tw
  *  h2
  *  lentferj
  *  maho@FreeBSD.org
  *  mzaki@biol.s.u-tokyo.ac.jp
  *  tonym
  *  wen@FreeBSD.org

With hat:	portmgr
commit hash: 37526bbd4e50616d87f70e1c788ae4895d88d671 commit hash: 37526bbd4e50616d87f70e1c788ae4895d88d671 commit hash: 37526bbd4e50616d87f70e1c788ae4895d88d671 commit hash: 37526bbd4e50616d87f70e1c788ae4895d88d671 37526bb
Tuesday, 6 Apr 2021
14:31 Mathieu Arnold (mat) search for other commits by this committer
Remove # $FreeBSD$ from Makefiles.
commit hash: 305f148f482daf30dcf728039d03d019f88344eb commit hash: 305f148f482daf30dcf728039d03d019f88344eb commit hash: 305f148f482daf30dcf728039d03d019f88344eb commit hash: 305f148f482daf30dcf728039d03d019f88344eb 305f148
Monday, 13 Jan 2020
17:36 fernape search for other commits by this committer
biology/tRNAscan-SE: update to 2.0.5

This commit also changes maintainer's email.

PR:	243248
Submitted by:	mzaki@e-mail.ne.jp (maintainer)
Original commitRevision:522898 
Saturday, 8 Jun 2019
01:31 swills search for other commits by this committer
biology/tRNAscan-SE: Update to 2.0.3

PR:		238253
Submitted by:	Motomichi Matsuzaki <mzaki@niid.go.jp>
Original commitRevision:503695 
Thursday, 30 May 2019
07:39 pkubaj search for other commits by this committer
biology/tRNAscan-SE: fix build with GCC-based architecturs

Add MAKE_JOBS_UNSAFE=yes to fix build.

Remove USES=compiler:c11, it's not necessary.

PR:		237848
Approved by:	mzaki@niid.go.jp (maintainer), linimon (mentor)
Differential Revision:	https://reviews.freebsd.org/D20439
Original commitRevision:503045 
Tuesday, 7 May 2019
19:45 pkubaj search for other commits by this committer
biology/tRNAscan-SE: fix build with GCC-based architectures

Add USES=compiler:c11 to fix build.

Approved by:	mentors (implicit approval)
Original commitRevision:500976 
Friday, 28 Sep 2018
00:12 wen search for other commits by this committer
- Unbreak by adding missing pkg-plist

PR:		228758
Submitted by:	mzaki@niid.go.jp(maintainer)
Original commitRevision:480837 
Friday, 29 Jun 2018
12:43 antoine search for other commits by this committer
Mark BROKEN: missing plist
Original commitRevision:473544 
Wednesday, 6 Jun 2018
15:20 krion search for other commits by this committer
Update to 2.0.0 and pass maintainership to committer.

PR:		228758
Submitted by:	Motomichi Matsuzaki <mzaki@niid.go.jp>
Original commitRevision:471852 
Saturday, 5 May 2018
10:49 antoine search for other commits by this committer
Deprecate ports broken for more than 6 months
Original commitRevision:469100 
Friday, 13 Oct 2017
11:14 bapt search for other commits by this committer
Mark as broken ports with no public distfiles
Original commitRevision:451982 
Tuesday, 29 Jul 2014
19:11 adamw search for other commits by this committer
Convert a bunch of EXTRACT_SUFX=... into USES=tar:...

Approved by:	portmgr (not really, but touches unstaged ports)
Original commitRevision:363374 
Monday, 5 May 2014
10:26 bapt search for other commits by this committer
Support stage
Original commitRevision:352989 
Friday, 20 Sep 2013
15:55 bapt search for other commits by this committer
Add NO_STAGE all over the place in preparation for the staging support (cat:
biology)
Original commitRevision:327709 
Saturday, 3 Aug 2013
08:45 az search for other commits by this committer
- Convert to new perl framework
- Trim Makefile header
Original commitRevision:324181 
Wednesday, 19 Jun 2013
19:20 bsam search for other commits by this committer
. NOPORTDOCS -> PORT_OPTIONS:MDOCS;
. pet portlint: use {} instaed of () at variable;
. use PLIST_FILES, PORTDATA and PORTDOCS at Makefile;
. get rid of pkg-plist;
. remove article from COMMENT;
. trim Makefile headers.
Original commitRevision:321314 
Thursday, 22 May 2008
00:49 miwi search for other commits by this committer
- Update MASTER_SITES and WWW: line
- Support CC/CFLAGS properly
- Strip binary

PR:             123866
Submitted by:   Ports Fury
Original commit
Thursday, 15 May 2008
02:50 erwin search for other commits by this committer
Update to 1.23
Original commit
Saturday, 10 Mar 2007
20:20 linimon search for other commits by this committer
Reset chuynh@biolateral.com.au: address bounces.

Hat:            portmgr
Original commit
Friday, 21 Feb 2003
11:01 knu search for other commits by this committer
De-pkg-comment.
Original commit
Monday, 4 Nov 2002
01:47 edwin search for other commits by this committer
Port needs perl to build.
Seen on: bento
Original commit
Wednesday, 27 Mar 2002
14:18 wjv search for other commits by this committer
Add tRNAscan-SE 1.21, an improved tool for transfer RNA detection.

PR:             33853
Submitted by:   chuynh@biolateral.com.au
Original commit

Number of commits found: 24