[ 11:45 Nuno Teixeira (eduardo)  Author: Motomichi Matsuzaki ]

• 5a4350de941e061def79fb2ab6b6f46d5eb10ad9 biology/tRNAscan-SE/Makefile
• 5a4350de941e061def79fb2ab6b6f46d5eb10ad9 biology/tRNAscan-SE/distinfo
• 5a4350de941e061def79fb2ab6b6f46d5eb10ad9 biology/tRNAscan-SE/files/patch-Makefile.am
• 5a4350de941e061def79fb2ab6b6f46d5eb10ad9 biology/tRNAscan-SE/pkg-plist

biology/tRNAscan-SE: Update to 2.0.11

ChangeLog:	http://lowelab.ucsc.edu/tRNAscan-SE/change_log.txt
PR:		266966

[ 00:12 wen  ]

• 480837 biology/tRNAscan-SE/Makefile
• 480837 biology/tRNAscan-SE/pkg-plist

- Unbreak by adding missing pkg-plist

PR:		228758
Submitted by:	mzaki@niid.go.jp(maintainer)

[ 19:20 bsam  ]

• 321314 biology/tRNAscan-SE/Makefile
• 321314 biology/tRNAscan-SE/pkg-plist

. NOPORTDOCS -> PORT_OPTIONS:MDOCS;
. pet portlint: use {} instaed of () at variable;
. use PLIST_FILES, PORTDATA and PORTDOCS at Makefile;
. get rid of pkg-plist;
. remove article from COMMENT;
. trim Makefile headers.

[ 00:49 miwi  ]

• 1.6 biology/tRNAscan-SE/Makefile
• 1.2 biology/tRNAscan-SE/files/patch-aa
• 1.2 biology/tRNAscan-SE/pkg-descr
• 1.3 biology/tRNAscan-SE/pkg-plist

- Update MASTER_SITES and WWW: line
- Support CC/CFLAGS properly
- Strip binary

PR:             123866
Submitted by:   Ports Fury

[ 09:29 osa  ]

• 1.4 biology/babel/pkg-plist
• 1.5 biology/biojava/pkg-plist
• 1.2 biology/coalesce/pkg-plist
• 1.2 biology/crimap/pkg-plist
• 1.2 biology/dna-qc/pkg-plist
• 1.2 biology/fasta/pkg-plist
• 1.2 biology/fasta3/pkg-plist
• 1.3 biology/fastdnaml/pkg-plist
• 1.2 biology/fluctuate/pkg-plist
• 1.2 biology/garlic/pkg-plist

Cosmetic fix: use %%DOCSDIR%% macro.
No functionally changes.

Submitted by:   Oleg Karachevtsev <ok@etrust.ru>
A part of PR:   57992

[ 14:18 wjv  ]

• 1.46 biology/Makefile
• 1.1 biology/tRNAscan-SE/Makefile
• 1.1 biology/tRNAscan-SE/distinfo
• 1.1 biology/tRNAscan-SE/files/patch-aa
• 1.1 biology/tRNAscan-SE/pkg-comment
• 1.1 biology/tRNAscan-SE/pkg-descr
• 1.1 biology/tRNAscan-SE/pkg-plist

Add tRNAscan-SE 1.21, an improved tool for transfer RNA detection.

PR:             33853
Submitted by:   chuynh@biolateral.com.au