non port: biology/tabixpp/Makefile |
Number of commits found: 8 |
Sunday, 22 Jan 2023
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17:01 Jason W. Bacon (jwb)
biology/tabixpp: Deprecate
Dependent ports will include it as a git submodule
9f24862 |
Friday, 6 Jan 2023
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01:29 Jason W. Bacon (jwb)
biology/tabixpp: Bump PORTREVISION for biology/htslib update
1c2f24c |
Wednesday, 7 Sep 2022
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21:10 Stefan Eßer (se)
Add WWW entries to port Makefiles
It has been common practice to have one or more URLs at the end of the
ports' pkg-descr files, one per line and prefixed with "WWW:". These
URLs should point at a project website or other relevant resources.
Access to these URLs required processing of the pkg-descr files, and
they have often become stale over time. If more than one such URL was
present in a pkg-descr file, only the first one was tarnsfered into
the port INDEX, but for many ports only the last line did contain the
port specific URL to further information.
There have been several proposals to make a project URL available as
a macro in the ports' Makefiles, over time.
This commit implements such a proposal and moves one of the WWW: entries
of each pkg-descr file into the respective port's Makefile. A heuristic
attempts to identify the most relevant URL in case there is more than
one WWW: entry in some pkg-descr file. URLs that are not moved into the
Makefile are prefixed with "See also:" instead of "WWW:" in the pkg-descr
files in order to preserve them.
There are 1256 ports that had no WWW: entries in pkg-descr files. These
ports will not be touched in this commit.
The portlint port has been adjusted to expect a WWW entry in each port
Makefile, and to flag any remaining "WWW:" lines in pkg-descr files as
deprecated.
Approved by: portmgr (tcberner)
b7f0544 |
Wednesday, 7 Apr 2021
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08:09 Mathieu Arnold (mat)
One more small cleanup, forgotten yesterday.
Reported by: lwhsu
cf118cc |
Tuesday, 6 Apr 2021
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14:31 Mathieu Arnold (mat)
Remove # $FreeBSD$ from Makefiles.
305f148 |
Monday, 23 Nov 2020
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16:13 pkubaj
biology/tabixpp: fix build on GCC architectures
c++ -O2 -pipe -fstack-protector-strong -isystem /usr/local/include
-fno-strict-aliasing -isystem /usr/local/include -fPIC -c tabix.cpp -Ihtslib
In file included from /usr/local/include/htslib/hts.h:37,
from /usr/local/include/htslib/tbx.h:30,
from tabix.hpp:5,
from tabix.cpp:1:
/usr/local/include/htslib/kstring.h: In function 'int ks_resize(kstring_t*,
size_t)':
/usr/local/include/htslib/kstring.h:149: error: 'SIZE_MAX' was not declared in
this scope
tabix.cpp: In constructor 'Tabix::Tabix(std::string&)':
tabix.cpp:15: warning: 'bgzf_is_bgzf' is deprecated (declared at
/usr/local/include/htslib/bgzf.h:263)
tabix.cpp:15: warning: 'bgzf_is_bgzf' is deprecated (declared at
/usr/local/include/htslib/bgzf.h:263)
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Monday, 3 Aug 2020
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17:40 jwb
biology/htslib: Upgrade to 1.10.2
Numerous bug fixes and enhancements since 1.9:
https://github.com/samtools/htslib/tags
Bump PORTREVISION on dependents that don't require additional patching
PR: 248089
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Saturday, 14 Apr 2018
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23:52 jwb
biology/tabixpp: C++ wrapper to tabix indexer
Reviewed by: mat
Approved by: jrm (mentor)
Differential Revision: https://reviews.freebsd.org/D14977
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Number of commits found: 8 |