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non port: biology/tinker/Makefile

Number of commits found: 64

Sunday, 29 Jul 2018
22:18 gerald search for other commits by this committer
Bump PORTREVISION for ports depending on the canonical version of GCC
in the ports tree (via Mk/bsd.default-versions.mk and lang/gcc) which
has now moved from GCC 6 to GCC 7 by default.

This includes ports
 - featuring USE_GCC=yes or USE_GCC=any,
 - featuring USES=fortran,
 - using Mk/bsd.octave.mk which in turn features USES=fortran, and those
 - with USES=compiler specifying one of openmp, nestedfct, c11, c++0x,
   c++11-lib, c++11-lang, c++14-lang, c++17-lang, or gcc-c++11-lib.

PR:		222542
Original commitRevision:475857 
Saturday, 10 Mar 2018
17:46 gerald search for other commits by this committer
Bump PORTREVISIONs of all users of math/mpc that we just updated to
version 1.1.0 (via revision 464079).
Original commitRevision:464084 
Sunday, 10 Sep 2017
20:55 gerald search for other commits by this committer
Bump PORTREVISION for ports depending on the canonical version of GCC
(via Mk/bsd.default-versions.mk and lang/gcc) which has moved from
GCC 5.4 to GCC 6.4 under most circumstances.

This includes ports
 - with USE_GCC=yes or USE_GCC=any,
 - with USES=fortran,
 - using Mk/bsd.octave.mk which in turn features USES=fortran, and
 - with USES=compiler specifying openmp, nestedfct, c++11-lib, c++11-lang,
   c++14-lang, c++0x, c11, or gcc-c++11-lib.

PR:		219275
Original commitRevision:449591 
Saturday, 1 Apr 2017
15:23 gerald search for other commits by this committer
Bump PORTREVISIONs for ports depending on the canonical version of GCC and
lang/gcc which have moved from GCC 4.9.4 to GCC 5.4 (at least under some
circumstances such as versions of FreeBSD or platforms).

This includes ports
 - with USE_GCC=yes or USE_GCC=any,
 - with USES=fortran,
 - using using Mk/bsd.octave.mk which in turn has USES=fortran, and
 - with USES=compiler specifying openmp, nestedfct, c++11-lib, c++14-lang,
   c++11-lang, c++0x, c11, or gcc-c++11-lib.

PR:		216707
Original commitRevision:437439 
Wednesday, 7 Dec 2016
13:24 gerald search for other commits by this committer
Bump PORTREVISIONS for ports depending on the canonical version of GCC and
lang/gcc which have moved from GCC 4.8.5 to GCC 4.9.4 (at least under some
circumstances such as versions of FreeBSD or platforms), part II.

The first part covered  ports with USE_GCC=yes, USE_GCC=any, or one of
gcc-c++11-lib, openmp, nestedfct, c++11-lib as well as c++14-lang,
c++11-lang, c++0x, c11 requested via USES=compiler.

This adds ports with USES=fortran and ports using Mk/bsd.octave.mk
which in turn has USES=fortran.

PR:		214965
Reported by:	thierry
Original commitRevision:428057 
Wednesday, 2 Nov 2016
22:45 mat search for other commits by this committer
Cleanup no longer needed CHMOD usage after r424898.

PR:		213743
Submitted by:	mat
Exp-run by:	antoine
Sponsored by:	Absolight
Original commitRevision:425174 
Friday, 21 Oct 2016
12:51 mat search for other commits by this committer
${RM} already has -f.

PR:		213570
Submitted by:	mat
Exp-run by:	antoine
Sponsored by:	Absolight
Original commitRevision:424411 
Wednesday, 19 Aug 2015
13:30 mat search for other commits by this committer
Convert ports to use the options helpers in categories [abc]*, and minor fixes.

Sponsored by:	Absolight
Differential Revision:	https://reviews.freebsd.org/D3412?
Original commitRevision:394778 
Monday, 18 May 2015
01:27 wen search for other commits by this committer
- Update to 7.1.3
Original commitRevision:386651 
Wednesday, 11 Mar 2015
13:44 mi search for other commits by this committer
Update from 7.1.1 to 7.1.2.
Original commitRevision:380981 
Sunday, 8 Mar 2015
18:34 mi search for other commits by this committer
Unbreak by updating from 7.0.1 to 7.1.1. Hopefully, the authors will
stop rerolling releases (and breaking downstream checksums) now.

While here, allow parallel builds (seems to work again now) and stop
extraction of unused subdirectories.
Original commitRevision:380785 
Saturday, 31 Jan 2015
09:49 antoine search for other commits by this committer
Mark BROKEN: Checksum and size mismatch

Reported by:	pkg-fallout
Original commitRevision:378195 
Sunday, 4 Jan 2015
15:21 pi search for other commits by this committer
biology/tinker: 6.2.6 -> 7.0.1

PR:		196376
Submitted by:	Nikola Kolev <koue@chaosophia.net>
Original commitRevision:376238 
Wednesday, 10 Sep 2014
20:50 gerald search for other commits by this committer
Update the default version of GCC in the Ports Collection from GCC 4.7.4
to GCC 4.8.3.

Part II, Bump PORTREVISIONs.

PR:		192025
Tested by:	antoine (-exp runs)
Approved by:	portmgr (implicit)
Original commitRevision:367888 
Tuesday, 22 Apr 2014
19:28 riggs search for other commits by this committer
- Un-break fetch stage: the name scheme of the source tarballs has changed
- Add LICENSE*
- Remove conflict with hunspell:
  - Rename the 'analyze' binary to 'analyze_t'
  - put a note in pkg-message.in
- Pet portlint

PR:		ports/187569
Submitted by:	Tsurutani Naoki <turutani@scphys.kyoto-u.ac.jp>
Approved by:	thierry (mentor)
MFH:	2014Q2
Original commitRevision:351875 
Monday, 10 Mar 2014
20:55 gerald search for other commits by this committer
Update the default version of GCC used in the Ports Collection from
GCC 4.6.4 to GCC 4.7.3.  This entails updating the lang/gcc port as
well as changing the default in Mk/bsd.default-versions.mk.

Part II, Bump PORTREVISIONs.

PR:		182136
Supported by:	Christoph Moench-Tegeder <cmt@burggraben.net> (fixing many ports)
Tested by:	bdrewery (two -exp runs)
Original commitRevision:347809 
Wednesday, 18 Dec 2013
18:27 tijl search for other commits by this committer
- biology/tinker: USES=fortran, staging.
- Add CONFLICTS_INSTALL between hunspell and tinker.
  Both install bin/analyze.
Original commitRevision:336854 
Saturday, 26 Oct 2013
00:52 gerald search for other commits by this committer
Update to libmpc version 1.0.1 which brings the following fixes:

 - Switched to automake 1.11.6, see CVE-2012-3386.
 - #14669: Fixed extraction of CC from gmp.h.
 - Fixed case of intermediate zero real or imaginary part in mpc_fma,
   found by hydra with GMP_CHECK_RANDOMIZE=1346362345.

This is on top of the following changes from version 1.0

 - Licence change towards LGPLv3+ for the code and GFDLv1.3+ (with no
   invariant sections) for the documentation.
 - 100% of all lines are covered by tests
 - Renamed functions
   . mpc_mul_2exp to mpc_mul_2ui
   . mpc_div_2exp to mpc_div_2ui
 - 0^0, which returned (NaN,NaN) previously, now returns (1,+0).
 - Removed compatibility with K&R compilers, which was untestable due
   to lack of such compilers.
 - New functions
   . mpc_log10
   . mpc_mul_2si, mpc_div_2si
 - Speed-ups
   . mpc_fma
 - Bug fixes
   . mpc_div and mpc_norm now return a value indicating the effective
     rounding direction, as the other functions.
   . mpc_mul, mpc_sqr and mpc_norm now return correct results even if
     there are over- or underflows during the computation.
   . mpc_asin, mpc_proj, mpc_sqr: Wrong result when input variable has
     infinite part and equals output variable is corrected.
   . mpc_fr_sub: Wrong return value for imaginary part is corrected.

Convert to the new LIB_DEPENDS standard and remove hard-coded
.so versions from a couple of dependent ports.

Bump PORTREVISIONS of all dependent ports.

PR:		183141
Approved by:	portmgr (bdrewery)
Original commitRevision:331644 
Friday, 20 Sep 2013
15:55 bapt search for other commits by this committer
Add NO_STAGE all over the place in preparation for the staging support (cat:
biology)
Original commitRevision:327709 
Sunday, 18 Aug 2013
11:38 marino search for other commits by this committer
biology/tinker: Regenerate distinfo to unbreak fetch

Apparently the distfile was rerolled.  The sizes of the file are only a few
bytes apart.  Since the master site never changed, it's reasonable just to
regenerate the distinfo and bump the PORTREVISION.

PR:		180664
Approved by:	bapt/culot (mentors, implicit)
Original commitRevision:324901 
Wednesday, 14 Aug 2013
22:35 ak search for other commits by this committer
- Remove MAKE_JOBS_SAFE variable

Approved by:	portmgr (bdrewery)
Original commitRevision:324744 
Monday, 15 Jul 2013
14:50 miwi search for other commits by this committer
- Update to 6.2.06

PR:		180518
Submitted by:	Ports Fury
Original commitRevision:323046 
Wednesday, 29 May 2013
05:25 miwi search for other commits by this committer
- Update to 6.2.05

PR:		179061
Submitted by:	Ports Fury
Original commitRevision:319343 
Tuesday, 21 May 2013
08:19 miwi search for other commits by this committer
- Update to 6.2.04

PR:		178590
Submitted by:	Ports Fury
Original commitRevision:318658 
Monday, 29 Apr 2013
14:23 miwi search for other commits by this committer
- Update to 6.2.02

PR:		178031
Submitted by:	Ports Fury
Original commitRevision:316821 
Sunday, 24 Mar 2013
16:13 miwi search for other commits by this committer
- Update to 6.2.01

PR:		177261
Submitted by:	ports fury
Original commitRevision:315140 
Saturday, 1 Dec 2012
00:00 sperber search for other commits by this committer
- Update to version 6.1.01
- Add MAKE_JOBS_SAFE
- Convert to optionsng
- Trim Makefile header

PR:           ports/171971
Submitted by: KATO Tsuguru <tkato432 _at_ yahoo.com>
Approved by:  beat (mentor)
Feature safe: yes
Original commitRevision:308054 
Monday, 10 Oct 2011
20:17 pav search for other commits by this committer
- ${FFLAGS} might contain commas

Reported by:    pointyhat
Original commit
Monday, 31 Jan 2011
11:45 miwi search for other commits by this committer
- Update to 5.1.09

PR:             154359
Submitted by:   Ruslan Mahmatkhanov <cvs-src@yandex.ru>
Feature safe:   yes
Original commit
Saturday, 30 Oct 2010
23:51 rene search for other commits by this committer
- Unbreak by removing some old and adding some new master sites
- Bump PORTREVISION
PR:             ports/151733
Submitted by:   Chris Petrik [c.petrik.sosa gmail.com]
Original commit
Thursday, 30 Sep 2010
08:53 erwin search for other commits by this committer
Mark BROKEN: does not fetch.
Original commit
Sunday, 13 Sep 2009
00:08 gerald search for other commits by this committer
Bump PORTREVISION for everything that sets USE_FORTRAN=yes which now
implies lang/gcc44 up from lang/gcc43.

Approved by:    portmgr
Original commit
Wednesday, 7 Jan 2009
16:34 gerald search for other commits by this committer
Bump PORTREVISION due to change of USE_FORTRAN=yes to GCC 4.3.
Original commit
Saturday, 19 Apr 2008
17:56 miwi search for other commits by this committer
- Remove unneeded dependency from gtk12/gtk20 [1]
- Remove USE_XLIB/USE_X_PREFIX/USE_XPM in favor of USE_XORG
- Remove X11BASE support in favor of LOCALBASE or PREFIX
- Use USE_LDCONFIG instead of INSTALLS_SHLIB
- Remove unneeded USE_GCC 3.4+

Thanks to all Helpers:
        Dmitry Marakasov, Chess Griffin, beech@, dinoex, rafan, gahr,
        ehaupt, nox, itetcu, flz, pav

PR:             116263
Tested on:      pointyhat
Approved by:    portmgr (pav)
Original commit
Thursday, 12 Jul 2007
06:49 maho search for other commits by this committer
Now we use USE_FORTRAN=yes to use FORTRAN compiler.
Original commit
Friday, 25 May 2007
01:41 edwin search for other commits by this committer
swap MASTER_SITES to improve fetchiness on pointyhat which is blocked from
dasher.wustl.edu
Original commit
01:00 kris search for other commits by this committer
BROKEN: Unfetchable
Original commit
Saturday, 21 Apr 2007
15:26 miwi search for other commits by this committer
- Unbreak
- Add backup MASTER_SITES

PR:             111963
Submitted by:   Jason Harris <jharris@widomaker.com>
Original commit
Friday, 20 Apr 2007
08:03 kris search for other commits by this committer
BROKEN: Unfetchable
Original commit
Friday, 16 Mar 2007
21:16 gabor search for other commits by this committer
- MASTER_SITE is back, remove BROKEN

PR:             ports/109954
Submitted by:   Tsurutani Naoki <turutani@scphys.kyoto-u.ac.jp>
Original commit
Tuesday, 27 Feb 2007
04:55 kris search for other commits by this committer
BROKEN: Unfetchable
Original commit
Friday, 12 Jan 2007
12:21 maho search for other commits by this committer
* Migrate to gfortran.
* Bump port revision.
Original commit
Wednesday, 3 May 2006
23:26 edwin search for other commits by this committer
Remove USE_REINPLACE from all categories starting with B
Original commit
Saturday, 25 Sep 2004
08:06 thierry search for other commits by this committer
Upgrade to latest revision to make fetchable again.

Approved by:    portmgr (marcus)
Original commit
Thursday, 19 Aug 2004
22:24 thierry search for other commits by this committer
- Unbreak by upgrading to 4.2;

- Use DIST_SUBDIR because tarball is not versioned;

- Add sysdate to PORTVERSION to handle minor revisions;

- Do some cleaning.
Original commit
Friday, 23 Jul 2004
20:31 anholt search for other commits by this committer
Use X_IMAKE_PORT instead of dist-specific imake dependencies.  While here,
make the BROKEN message a little more informative.
Original commit
Saturday, 3 Jul 2004
09:53 kris search for other commits by this committer
BROKEN: Checksum mismatch
Original commit
Saturday, 10 Apr 2004
17:26 trevor search for other commits by this committer
Tidy up whitespace.
Original commit
Friday, 21 Nov 2003
22:28 pav search for other commits by this committer
- Update checksum again, seems author removes .ps version of documentation
  from tarball
- Unmark broken, it builds for me just fine

Approved by:    adamw (mentor)
Original commit
Thursday, 16 Oct 2003
00:58 linimon search for other commits by this committer
Forced commit to add rationale.  (Note: this port was previously
broken due to a bad checksum; the initial intent of the update
was to try to fix only that.  However, the new revision fails
as well, but this led to my being sloppy with the checkin.
As Maxwell Smart said, "Sorry about that, Chief.")

New distfile 9/13.  "Changes from TINKER 4.0 include some new force
field parameter sets, improvements to rigid body dynamics, a
Nose-Hoover thermostat, and numerous minor additions and bug fixes."

However, the compilation fails in sockets.c with an undefined
ref to <jni.h>.  This is part of: "an interface between TINKER Fortran
code and FFE Java objects used for socket based communication."

Some interested party is going to have to take up this one, I'm
afraid, as I have no idea what is involved.

Reminded by: kris
Original commit
Wednesday, 15 Oct 2003
23:56 linimon search for other commits by this committer
Fixes the checksum problem, but doesn't fix the port; adds a BROKEN
line about how it fails.  Some other interested person will have
to take it from here.

PR:             56882
Original commit
Friday, 25 Jul 2003
22:30 maho search for other commits by this committer
Some clean-up.
a) ECHO-> ECHO_CMD
b) place of WITH_OPTIMIZED_FLAGS seems to be wrong.
c) fix errors reported from freshports.org
Original commit
21:19 maho search for other commits by this committer
Duplicated the `pre-extract:' and `post-build:'

Submitted by:   Glenn Johnson <gjohnson@srrc.ars.usda.gov>
Pointy hat to:  myself
Original commit
07:19 maho search for other commits by this committer
a) Some corrupts with Makefile and pkg-plist.
b) forgot to notice that drop maintainership to ports@

Submitted by:   Glenn Johnson <gjohnson@srrc.ars.usda.gov>
Pointy hat to:  myself
Original commit
02:48 maho search for other commits by this committer
a) Forgot to update distinfo 52498
b) added LEGAL. author requests no distribution
   except from his FTP site
c) clean-ups for compiler optimization

Submitted by:   Glenn Johnson <gjohnson@srrc.ars.usda.gov>
Pointy hat to:  maho; partially :)
Original commit
Saturday, 19 Jul 2003
03:48 maho search for other commits by this committer
Maintainer update of biology/tinker port to version 4.0.

PR:             52498
Submitted by:   Glenn Johnson <gjohnson@srrc.ars.usda.gov>
Original commit
Sunday, 30 Mar 2003
06:43 edwin search for other commits by this committer
Update the biology/tinker Makefile so it builds on -current

PR:             ports/50371
Submitted by:   Glenn Johnson <gjohnson@srrc.ars.usda.gov>
Original commit
Friday, 21 Feb 2003
11:01 knu search for other commits by this committer
De-pkg-comment.
Original commit
Saturday, 19 Jan 2002
15:15 ijliao search for other commits by this committer
Upgrade tinker to the latest revision    
Original commit
Thursday, 13 Sep 2001
04:50 lioux search for other commits by this committer
style fix: un"echo" commands    
Original commit
02:13 lioux search for other commits by this committer
Update to 3.9    
Original commit
Friday, 20 Apr 2001
15:01 olgeni search for other commits by this committer
Update distfile checksum (PORTREVISION bumped)    
Original commit
Wednesday, 24 Jan 2001
17:58 ijliao search for other commits by this committer
update from 3.7 to 3.8    
Original commit
Friday, 9 Jun 2000
05:59 will search for other commits by this committer
Clean up this port so that it installs stuff in a more proper location   as per
hier(7) and Porter's Handbook.    
Original commit

Number of commits found: 64