notbugAs an Amazon Associate I earn from qualifying purchases.
Want a good read? Try FreeBSD Mastery: Jails (IT Mastery Book 15)Want a good monitor light? See my photosAll times are UTC		 Ukraine
This referral link gives you 10% off a Fastmail.com account and gives me a discount on my Fastmail account.

Get notified when packages are built

A new feature has been added. FreshPorts already tracks package built by the FreeBSD project. This information is displayed on each port page. You can now get an email when FreshPorts notices a new package is available for something on one of your watch lists. However, you must opt into that. Click on Report Subscriptions on the right, and New Package Notification box, and click on Update.

Finally, under Watch Lists, click on ABI Package Subscriptions to select your ABI (e.g. FreeBSD:14:amd64) & package set (latest/quarterly) combination for a given watch list. This is what FreshPorts will look for.

Port details on branch 2022Q3
treekin Efficient computation of RNA folding dynamics
0.5.1_6 biology on this many watch lists=0 search for ports that depend on this port Find issues related to this port Report an issue related to this port View this port on Repology. pkg-fallout 0.5.1_6Version of this port present on the latest quarterly branch.
Maintainer: yuri@FreeBSD.org search for ports maintained by this maintainer
Port Added: 2019-06-15 20:37:22
Last Update: 2024-03-02 20:02:27
Commit Hash: 5c2b06d
License: LatticeLib
WWW:
https://www.tbi.univie.ac.at/RNA/Treekin/
Description:
treekin computes folding dynamics on coarse grained version of an energy landscape, where all conformations belonging to the same local minimum have been contracted into a single macro-state.
Homepage    cgit ¦ Codeberg ¦ GitHub ¦ GitLab ¦ SVNWeb

Manual pages:
FreshPorts has no man page information for this port.
pkg-plist: as obtained via: make generate-plist
Expand this list (5 items)
Collapse this list.
  1. bin/treekin
  2. share/man/man1/treekin.1.gz
  3. /usr/local/share/licenses/treekin-0.5.1_6/catalog.mk
  4. /usr/local/share/licenses/treekin-0.5.1_6/LICENSE
  5. /usr/local/share/licenses/treekin-0.5.1_6/LatticeLib
Collapse this list.
Dependency lines:
  • treekin>0:biology/treekin
To install the port:
cd /usr/ports/biology/treekin/ && make install clean
To add the package, run one of these commands:
  • pkg install biology/treekin
  • pkg install treekin
NOTE: If this package has multiple flavors (see below), then use one of them instead of the name specified above.
PKGNAME: treekin
Flavors: there is no flavor information for this port.
distinfo:
TIMESTAMP = 1560629735 SHA256 (Treekin-0.5.1.tar.gz) = aae56c1a746829b02a9b97c6a54d1d58348718d4ca585ef41a5dbdd41d5c9f06 SIZE (Treekin-0.5.1.tar.gz) = 222232
Packages (timestamps in pop-ups are UTC):
treekin
ABIaarch64amd64armv6armv7i386powerpcpowerpc64powerpc64le
FreeBSD:13:latest0.5.1_60.5.1_60.5.1_20.5.1_60.5.1_6-0.5.1_2-
FreeBSD:13:quarterly0.5.1_50.5.1_5-0.5.1_50.5.1_6-0.5.1_50.5.1_5
FreeBSD:14:latest0.5.1_60.5.1_6-0.5.1_60.5.1_6---
FreeBSD:14:quarterly0.5.1_50.5.1_6-0.5.1_50.5.1_6-0.5.1_50.5.1_5
FreeBSD:15:latest0.5.1_60.5.1_6n/a0.5.1_5n/a-0.5.1_50.5.1_5
FreeBSD:15:quarterly--n/a-n/a---
Dependencies
NOTE: FreshPorts displays only information on required and default dependencies. Optional dependencies are not covered.
Build dependencies:
  1. lapacke>0 : math/lapacke
  2. gfortran13 : lang/gcc13
  3. gmake>=4.3 : devel/gmake
  4. as : devel/binutils
Runtime dependencies:
  1. gfortran13 : lang/gcc13
Library dependencies:
  1. libblas.so : math/blas
  2. liblapack.so : math/lapack
There are no ports dependent upon this port
Configuration Options:
No options to configure
Options name:
biology_treekin
USES:
blaslapack:netlib compiler:c++11-lang fortran gmake localbase:ldflags
FreshPorts was unable to extract/find any pkg message
Master Sites:
Expand this list (1 items)
Collapse this list.
  1. https://www.tbi.univie.ac.at/RNA/packages/source/
Collapse this list.

There are no commits on branch 2022Q3 for this port
Login
User Login
Create account

Servers and bandwidth provided by
New York Internet, iXsystems, and RootBSD

This site
What is FreshPorts?
About the authors
Issues
FAQ
How big is it?
Security Policy
Privacy
Blog
Contact

Search
Enter Keywords:
 
more...

Latest Vulnerabilities
filezillaApr 16
puttyApr 16
putty-nogtkApr 16
go121Apr 15
go122Apr 15
chromiumApr 12
ungoogled-chromiumApr 12
electron27Apr 11
electron28Apr 11
forgejoApr 11
gitlab-ceApr 11
joseApr 11
opensslApr 11
openssl-quictlsApr 11
openssl31Apr 11

14 vulnerabilities affecting 305 ports have been reported in the past 14 days

* - modified, not new

All vulnerabilities

Last processed:
2024-04-16 06:42:40 UTC


Ports
Home
Categories
Deleted ports
Sanity Test Failures
Newsfeeds

Statistics
Graphs
NEW Graphs (Javascript)

Calculated hourly:
Port count 32211
Broken 87
Deprecated 185
Ignore 220
Forbidden 2
Restricted 2
No CDROM 1
Vulnerable 41
Expired 8
Set to expire 159
Interactive 0
new 24 hours 2
new 48 hours2
new 7 days9
new fortnight61
new month182
Servers and bandwidth provided by
New York Internet, iXsystems, and RootBSD 		Valid HTML, CSS, and RSS. Copyright © 2000-2024 Dan Langille. All rights reserved.