Port details on branch 2022Q3 |
- ucsc-userapps Command line tools from the UCSC Genome Browser project
- 414_1 biology =0 414_1Version of this port present on the latest quarterly branch.
- RESTRICTED: Redistribution is limited, see license
- Maintainer: jwb@FreeBSD.org
- Port Added: 2021-04-25 17:21:12
- Last Update: 2023-12-30 07:16:41
- Commit Hash: 9ee2e86
- Also Listed In: perl5 python
- License: UCSC-GB
- WWW:
- https://hgdownload.cse.ucsc.edu/admin/exe/
- Description:
- These are the command-line bioinformatics utilities associated with the UCSC
genome browser. Care has been taken to install only the freely available
tools. However, the license information at https://genome.ucsc.edu/license/
is not entirely clear and we may add non-free utilities in the future.
Contact UCSC if you are using this port for commercial purposes.
- ¦ ¦ ¦ ¦
- Manual pages:
- FreshPorts has no man page information for this port.
- pkg-plist: as obtained via:
make generate-plist - Dependency lines:
-
- ucsc-userapps>0:biology/ucsc-userapps
- To install the port:
- cd /usr/ports/biology/ucsc-userapps/ && make install clean
- We doubt a package is available for this port because we see it marked as as:
- Restricted
- Package not available
Packages are normally not provided for ports that are marked as above.- To add the package, run one of these commands:
- pkg install biology/ucsc-userapps
- pkg install ucsc-userapps
NOTE: If this package has multiple flavors (see below), then use one of them instead of the name specified above.- PKGNAME: there is no package for this port: _LICENSE_RESTRICTED = delete-package delete-distfiles
- Flavors: there is no flavor information for this port.
- ONLY_FOR_ARCHS: amd64
- distinfo:
- TIMESTAMP = 1621027743
SHA256 (userApps.v414.src.tgz) = 36910b5c84ea613d4eb6ccb9572f3b34d929c5571578b1d91013391895638ab0
SIZE (userApps.v414.src.tgz) = 19195157
No package information for this port in our database- Sometimes this happens. Not all ports have packages.
- Dependencies
- NOTE: FreshPorts displays only information on required and default dependencies. Optional dependencies are not covered.
- Build dependencies:
-
- bash : shells/bash
- gmake>=4.3 : devel/gmake
- python3.9 : lang/python39
- perl5>=5.36<5.37 : lang/perl5.36
- Test dependencies:
-
- python3.9 : lang/python39
- Runtime dependencies:
-
- bash : shells/bash
- python3.9 : lang/python39
- perl5>=5.36<5.37 : lang/perl5.36
- Library dependencies:
-
- libiconv.so : converters/libiconv
- libpng.so : graphics/png
- libmysqlclient.so.21 : databases/mysql80-client
- There are no ports dependent upon this port
Configuration Options:
- No options to configure
- Options name:
- biology_ucsc-userapps
- USES:
- gmake localbase:ldflags mysql shebangfix perl5 python ssl tar:tgz
- pkg-message:
- For install:
-
ucsc-kentutils is installed in it's own directory in order to avoid install
conflicts with other ports. Run "ucsc-shell" to gain access to ucsc-kentutils
commands in your PATH.
This port installs only freely available components of the UCSC userApps
distribution. See http://genome.ucsc.edu/license/ for more information.
- Master Sites:
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