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non port: biology/ucsc-userapps/Makefile
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Number of commits found: 5

Mon, 25 Oct 2021
[ 12:58 Alexey Dokuchaev (danfe) search for other commits by this committer ]    commit hash:61b661339366b6ee95ca1de0667979da9240c6b8  61b6613  (Only the first 10 of 79 ports in this commit are shown above. View all ports for this commit)
Style: improve ONLY_FOR_ARCHS_REASON (grammar, markup, etc.)

ONLY_FOR_ARCHS_REASON is used as part of the sentence and thus should
start with lower-case letter and not end with a period which is added
by the framework, similar to other knobs like BROKEN, IGNORE, et al.

While here, remove needless quoting, add missing Oxford comma, expand
contractions and jargonisms, use correct spelling for proper names.
Fri, 24 Sep 2021
[ 21:53 Jason W. Bacon (jwb) search for other commits by this committer ]    commit hash:d94f19ab9ffcd2fac7650802d6aea3f68156f5d7  d94f19a 
biology/ucsc-userapps: Add "kent" command in ${PREFIX}/bin

Standard kent userapps commands are installed under ${PREFIX}/userapps
because of multiple conflicts.  The kent command turns the standard
commands into subcommands, so no special PATH is needed.

    /usr/local/ucsc-userapps/bin/bigWigToBedGraph [args]

can be run as

    kent bigWigToBedGraph [args]
Sat, 15 May 2021
[ 15:23 Jason W. Bacon (jwb) search for other commits by this committer ]    commit hash:43397d188c684b83c4bff3e9b78862a1f6ab47f7  43397d1 
biology/ucsc-userapps: Update to v414

Update license message.  Confirmed via conversation with UCSC that some
proprietary code is used in the "free" tools build.  UCSC is working on it.
Thu, 6 May 2021
[ 11:47 Mathieu Arnold (mat) search for other commits by this committer ]    commit hash:adb93122cbf753a26a0497479dbb88cf415de29b  adb9312  (Only the first 10 of 61 ports in this commit are shown above. View all ports for this commit)
Deorbit RESTRICTED && NO_CDROM, part one.

For ports that already use the licenses framwork, merge the content of
RESTRICTED/NO_CDROM/LEGAL* entries into LICENSEs.

Approved by:	rene
Differential Revision:	https://reviews.freebsd.org/D30010
Sun, 25 Apr 2021
[ 17:18 Jason W. Bacon (jwb) search for other commits by this committer ]    commit hash:6b63ef7436c4e0ec7693779240f1c90fa6e57a57  6b63ef7  (Only the first 10 of 13 ports in this commit are shown above. View all ports for this commit)
biology/ucsc-userapps: Command line tools from the UCSC Genome Browser project

These are the command-line bioinformatics utilities associated with the UCSC
genome browser.  Care has been taken to install only the freely available
tools.  However, the license information at https://genome.ucsc.edu/license/
is not entirely clear and we may add non-free utilities in the future.

Contact UCSC if you are using this port for commercial purposes.

Number of commits found: 5