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Current status

The server has been repaired, with a new power supply, for $23. I am waiting for lower COVID rates before visiting the datacenter to return it.
VUXML processing is halted. All vuln information is out of date.
non port: biology/ugene/pkg-plist
SVNWeb

Number of commits found XX: 18

Thu, 31 Dec 2020
[ 13:43 danfe ] Original commit   Revision:559737
559737 biology/ugene/Makefile
559737 biology/ugene/distinfo
559737 biology/ugene/files/patch-src_corelibs_U2Designer_src_WorkflowGUIUtils.cpp
559737 biology/ugene/files/patch-src_corelibs_U2Gui_src_util_GUIUtils.cpp
559737 biology/ugene/files/patch-src_corelibs_U2View_src_ov__sequence_Overview.cpp
559737 biology/ugene/files/patch-src_libs__3rdparty_QSpec_src_drivers_GTKeyboardDriverLinux.cpp
559737 biology/ugene/files/patch-src_libs__3rdparty_QSpec_src_drivers_GTMouseDriverLinux.cpp
559737 biology/ugene/files/patch-src_plugins__checker_src_Main.cpp
559737 biology/ugene/files/patch-src_ugenecl_src_Main.cpp
559737 biology/ugene/files/patch-src_ugeneui_src_Main.cpp

(Only the first 10 of 13 ports in this commit are shown above. View all ports for this commit)
- Update Unipro UGENE port to version 37.0
- Drop no longer used WebEngine dependencies
- Force SSE2 on i386 (required for the build)
- Chase HTTP 301 redirection in the WWW line
Sun, 10 May 2020
[ 15:42 danfe ] Original commit   Revision:534852
534852 MOVED
534852 biology/Makefile
534852 biology/ugene
534852 biology/ugene/Makefile
534852 biology/ugene/distinfo
534852 biology/ugene/files/patch-git_578c949
534852 biology/ugene/files/patch-src_plugins_test__runner_src_Reporter.ui
534852 biology/ugene/pkg-plist
- Resurrect and unbreak by updating to version 34.0
- Stop providing outdated offline PDF documentation,
  users are advised to use the online files instead
Sun, 2 Sep 2018
[ 20:47 jhale ] Original commit   Revision:478818
478818 biology/ugene/Makefile
478818 biology/ugene/distinfo
478818 biology/ugene/files/patch-git_279756e4
478818 biology/ugene/files/patch-git_578c949
478818 biology/ugene/files/patch-src_corelibs_U2Private_U2Private.pro
478818 biology/ugene/files/patch-src_libs__3rdparty_QSpec_src_drivers_GTKeyboardDriverLinux.cpp
478818 biology/ugene/files/patch-src_libs__3rdparty_QSpec_src_drivers_GTMouseDriverLinux.cpp
478818 biology/ugene/files/patch-src_libs__3rdparty_samtools_samtools.pri
478818 biology/ugene/files/patch-src_plugins__3rdparty_phylip_src_phylip.h
478818 biology/ugene/files/patch-src_plugins__3rdparty_umuscle_src_MuscleWorkPool.cpp

(Only the first 10 of 17 ports in this commit are shown above. View all ports for this commit)
Update to 1.31.0

PR:		229463
Approved by:	Hannes Hauswedell <h2+fbsdports@fsfe.org> (maintainer)
Thu, 14 Apr 2016
[ 04:07 danfe ] Original commit   Revision:413242
413242 biology/ugene/Makefile
413242 biology/ugene/distinfo
413242 biology/ugene/files
413242 biology/ugene/files/patch-src_corelibs_U2Private_U2Private.pro
413242 biology/ugene/files/patch-src_plugins__3rdparty_umuscle_src_MuscleWorkPool.cpp
413242 biology/ugene/files/patch-src_plugins__checker_src_Main.cpp
413242 biology/ugene/files/patch-src_ugenecl_src_Main.cpp
413242 biology/ugene/files/patch-src_ugeneui_src_Main.cpp
413242 biology/ugene/files/patch-ugene.pro
413242 biology/ugene/pkg-plist
Update to version 1.22.0, which now unfortunately requires Qt 5.x.  Also
since around v1.18.0, UGENE is using Google's Breakpad library for crash
reporting, which is very system-specific and does not support FreeBSD at
the moment.  Due to lack of resources and interest in porting it, simply
disable crash reporting code for the time being.
Thu, 28 May 2015
[ 08:12 danfe ] Original commit   Revision:387709
387709 biology/ugene/Makefile
387709 biology/ugene/distinfo
387709 biology/ugene/pkg-plist
Update Unipro UGENE to version 1.16.2.
Mon, 23 Mar 2015
[ 01:44 danfe ] Original commit   Revision:381974
381974 biology/ugene/Makefile
381974 biology/ugene/distinfo
381974 biology/ugene/pkg-plist
- Update to version 1.16.1
- Explicitly list all required Qt components in USE_QT4 instead of relying
  on them being silently picked up through `www/webkit-qt4' dependency
- Group *_build components together while here
- Remove one REINPLACE_CMD call that is no longer needed
Tue, 24 Feb 2015
[ 11:42 danfe ] Original commit   Revision:379787
379787 biology/ugene/Makefile
379787 biology/ugene/distinfo
379787 biology/ugene/pkg-plist
Update Unipro UGENE to version 1.16.0 (documentation was also rerolled).
Tue, 6 Jan 2015
[ 05:28 danfe ] Original commit   Revision:376383
376383 biology/ugene/Makefile
376383 biology/ugene/distinfo
376383 biology/ugene/pkg-plist
Update to version 1.15.1.
Wed, 3 Dec 2014
[ 01:40 danfe ] Original commit   Revision:373799
373799 biology/ugene/Makefile
373799 biology/ugene/distinfo
373799 biology/ugene/pkg-plist
Update to version 1.15.0.
Mon, 20 Oct 2014
[ 07:10 bapt ] Original commit   Revision:371237
371237 biology/artemis/pkg-plist
371237 biology/biococoa/pkg-plist
371237 biology/crux/pkg-plist
371237 biology/emboss/pkg-plist
371237 biology/fasta3/pkg-plist
371237 biology/fastdnaml/pkg-plist
371237 biology/garlic/pkg-plist
371237 biology/hmmer/pkg-plist
371237 biology/iolib/pkg-plist
371237 biology/jalview/pkg-plist

(Only the first 10 of 36 ports in this commit are shown above. View all ports for this commit)
Cleanup plist
Mon, 13 Oct 2014
[ 11:01 danfe ] Original commit   Revision:370764
370764 biology/ugene/Makefile
370764 biology/ugene/distinfo
370764 biology/ugene/pkg-plist
Update to version 1.14.2.
Mon, 1 Sep 2014
[ 07:39 danfe ] Original commit   Revision:366842
366842 biology/ugene/Makefile
366842 biology/ugene/distinfo
366842 biology/ugene/files
366842 biology/ugene/pkg-plist
- Update Unipro UGENE and documentation to version 1.14.0
- Remove patches integrated upstream (it's nice to have direct contact)
- Sort USES and pkg-plist, cleanup Makefile a bit while here

Approved by:	maintainer (implicit)
Thu, 16 Jan 2014
[ 17:17 danfe ] Original commit   Revision:339938
339938 biology/ugene/Makefile
339938 biology/ugene/distinfo
339938 biology/ugene/files/patch-clang-fixes
339938 biology/ugene/files/patch-gtest-std::tr1::tuple-fix
339938 biology/ugene/files/patch-src-corelibs-U2Core-src-globals-AppResources.cpp
339938 biology/ugene/files/patch-src-shtirlitz-Shtirlitz.cpp
339938 biology/ugene/files/patch-src-ugenem-src-SendReportDialog.cpp
339938 biology/ugene/files/patch-src-ugeneui-src-Main.cpp
339938 biology/ugene/pkg-plist
- Update to version 1.13.0 and improve FreeBSD support; it also builds
  pretty cleanly with GCC v4.2, v4.6, and Clang (modulo a few warnings)
- Sadly, do not use PORTDOCS: since DOCSDIR is set to be inside DATADIR,
  and will get appended to PLIST after @dirrm %%DATADIR%%, which upsets
  sanity checking tools; instead, list the docs explicitly in DISTFILES
  and add them to pkg-plist (guarded by %%PORTDOCS%%)

Tested on:	i386 (only)
Fri, 1 Nov 2013
[ 15:20 danfe ] Original commit   Revision:332391
332391 biology/ugene/Makefile
332391 biology/ugene/distinfo
332391 biology/ugene/pkg-plist
- Install official UGENE documentation (PDF)
- Utilize DIST_SUBDIR as now it's more than one distfile
Thu, 31 Oct 2013
[ 15:30 danfe ] Original commit   Revision:332256
332256 biology/ugene/Makefile
332256 biology/ugene/distinfo
332256 biology/ugene/files/patch-clang-fixes
332256 biology/ugene/files/patch-gtest-std::tr1::tuple-fix
332256 biology/ugene/files/patch-src-corelibs-U2Private-src-CrashHandler.cpp
332256 biology/ugene/files/patch-src-plugins_3rdparty-umuscle-src-muscle-intmath.cpp
332256 biology/ugene/pkg-descr
332256 biology/ugene/pkg-plist
- Update to version 1.12.3
- Conditionalize dependency on `devel/libexecinfo'
- Try to detect SSE2 support
- Convert to USES=qmake and stafigy
- Improve grammar in port description while here

Approved by:	maintainer (implicit)
Tue, 22 Oct 2013
[ 13:57 amdmi3 ] Original commit   Revision:331271
331271 benchmarks/phoronix-test-suite/pkg-plist
331271 biology/gperiodic/Makefile
331271 biology/gperiodic/pkg-plist
331271 biology/ugene/pkg-plist
331271 cad/geda-gattrib/pkg-plist
331271 cad/geda-gschem/pkg-plist
331271 cad/geda/pkg-plist
331271 cad/gerbv/Makefile
331271 cad/gerbv/pkg-plist
331271 cad/gtkwave/pkg-plist

(Only the first 10 of 103 ports in this commit are shown above. View all ports for this commit)
- Remove manual creation and removal of share/applications, as it's now in the
mtree (categories starting with [bce])

Approved by:	portmgr (bdrewery)
Mon, 25 Feb 2013
[ 13:00 danfe ] Original commit   Revision:312918
312918 biology/ugene/Makefile
312918 biology/ugene/files/patch-src-corelibs-U2Private-src-CrashHandler.cpp
312918 biology/ugene/files/patch-src-plugins_3rdparty-umuscle-src-muscle-intmath.cpp
312918 biology/ugene/pkg-plist
Unbreak on 7.X and i386 systems.

Reported by:	QAT
Sat, 23 Feb 2013
[ 04:50 danfe ] Original commit   Revision:312798
312798 biology/Makefile
312798 biology/ugene
312798 biology/ugene/Makefile
312798 biology/ugene/distinfo
312798 biology/ugene/files
312798 biology/ugene/files/patch-src-corelibs-U2Private-src-CrashHandler.cpp
312798 biology/ugene/pkg-descr
312798 biology/ugene/pkg-plist
Add Unipro UGENE, a free open-source crowss-platform bioinformatics software.

PR:		ports/173387
Submitted by:	Hannes Hauswedell

Number of commits found XX: 18

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