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Port details on branch 2022Q3
unanimity Pacific Biosciences consensus library and applications
3.4.1_4 biology Deleted on this many watch lists=0 search for ports that depend on this port Find issues related to this port Report an issue related to this port View this port on Repology. pkg-fallout 3.4.1_4Version of this port present on the latest quarterly branch.
Broken BROKEN: unfetchable
Deprecated DEPRECATED: Unmaintained, uses EOLed python27
Expired This port expired on: 2020-01-27
Ignore IGNORE: is marked as broken: unfetchable
There is no maintainer for this port.
Any concerns regarding this port should be directed to the FreeBSD Ports mailing list via ports@FreeBSD.org search for ports maintained by this maintainer
Port Added: 2018-04-24 14:17:02
Last Update: 2020-01-27 15:34:18
SVN Revision: 524263
License: BSD3CLAUSE
WWW:
https://github.com/PacificBiosciences/unanimity
Description:
Unanimity is a C++ library + applications to generate and process accurate consensus sequences from Pacific Biosciences sequence data. The core binary, CCS (circular consensus calling) takes multiple reads of the same SMRTbell sequence and combines them, employing a statistical model, to produce one high quality consensus sequence. WWW: https://github.com/PacificBiosciences/unanimity
Homepage    cgit ¦ GitHub ¦ GitHub ¦ GitLab ¦ SVNWeb

Manual pages:
FreshPorts has no man page information for this port.
pkg-plist: as obtained via: make generate-plist
Expand this list (86 items)
Collapse this list.
  1. @ldconfig
  2. /usr/local/share/licenses/unanimity-3.4.1_4/catalog.mk
  3. /usr/local/share/licenses/unanimity-3.4.1_4/LICENSE
  4. /usr/local/share/licenses/unanimity-3.4.1_4/BSD3CLAUSE
  5. bin/ChimeraLabeler
  6. bin/arrow
  7. bin/ccs
  8. bin/ccs_sim
  9. bin/gcpp
  10. bin/genomic_sim
  11. bin/variantCaller
  12. include/pacbio/UnanimityConfig.h
  13. include/pacbio/UnanimityVersion.h
  14. include/pacbio/align/AffineAlignment.h
  15. include/pacbio/align/AlignConfig.h
  16. include/pacbio/align/BandedAligner.h
  17. include/pacbio/align/BandedChainAlignment.h
  18. include/pacbio/align/ChainScorer.h
  19. include/pacbio/align/ChainSeeds.h
  20. include/pacbio/align/ChainSeedsConfig.h
  21. include/pacbio/align/FilterSeeds.h
  22. include/pacbio/align/FindSeeds.h
  23. include/pacbio/align/FindSeedsConfig.h
  24. include/pacbio/align/HomopolymerHasher.h
  25. include/pacbio/align/LinearAlignment.h
  26. include/pacbio/align/LocalAlignment.h
  27. include/pacbio/align/PairwiseAlignment.h
  28. include/pacbio/align/SeedScorer.h
  29. include/pacbio/align/SparseAlignment.h
  30. include/pacbio/align/internal/BCAlignBlocks.h
  31. include/pacbio/align/internal/BCAlignImpl.h
  32. include/pacbio/ccs/Consensus.h
  33. include/pacbio/ccs/ConsensusSettings.h
  34. include/pacbio/ccs/SparseAlignment.h
  35. include/pacbio/ccs/Whitelist.h
  36. include/pacbio/chimera/ChimeraLabel.h
  37. include/pacbio/chimera/ChimeraLabeler.h
  38. include/pacbio/chimera/ChimeraResultWriter.h
  39. include/pacbio/consensus/AbstractMatrix.h
  40. include/pacbio/consensus/Coverage.h
  41. include/pacbio/consensus/EasyReadScorer.h
  42. include/pacbio/consensus/Evaluator.h
  43. include/pacbio/consensus/Integrator.h
  44. include/pacbio/consensus/IntervalMask.h
  45. include/pacbio/consensus/MatrixViewConvention.h
  46. include/pacbio/consensus/ModelConfig.h
  47. include/pacbio/consensus/ModelSelection.h
  48. include/pacbio/consensus/Mutation.h
  49. include/pacbio/consensus/Polish.h
  50. include/pacbio/consensus/PolishResult.h
  51. include/pacbio/consensus/Template.h
  52. include/pacbio/consensus/internal/ModelInternalInitializer.h
  53. include/pacbio/data/ChemistryMapping.h
  54. include/pacbio/data/ChemistryTriple.h
  55. include/pacbio/data/Interval.h
  56. include/pacbio/data/IntervalTree.h
  57. include/pacbio/data/PlainOption.h
  58. include/pacbio/data/Read.h
  59. include/pacbio/data/ReadId.h
  60. include/pacbio/data/Sequence.h
  61. include/pacbio/data/State.h
  62. include/pacbio/data/StrandType.h
  63. include/pacbio/data/SubreadResultCounter.h
  64. include/pacbio/data/internal/BaseEncoding.h
  65. include/pacbio/data/internal/ConversionFunctions.h
  66. include/pacbio/denovo/PoaConsensus.h
  67. include/pacbio/denovo/PoaGraph.h
  68. include/pacbio/denovo/RangeFinder.h
  69. include/pacbio/denovo/SparsePoa.h
  70. include/pacbio/exception/CCSExceptions.h
  71. include/pacbio/exception/InvalidEvaluatorException.h
  72. include/pacbio/exception/ModelError.h
  73. include/pacbio/exception/StateError.h
  74. include/pacbio/io/Utility.h
  75. include/pacbio/parallel/WorkQueue.h
  76. include/pacbio/util/ExecUtils.h
  77. include/pacbio/util/Timer.h
  78. lib/libunanimity.so
  79. lib/libunanimity.so.3
  80. lib/libunanimity.so.3.0
  81. lib/libunanimity.so.3.0.0
  82. lib/python2.7/site-packages/ConsensusCore2.py
  83. lib/python2.7/site-packages/ConsensusCore2.pyc
  84. lib/python2.7/site-packages/ConsensusCore2.pyo
  85. lib/python2.7/site-packages/_ConsensusCore2.so
  86. libdata/pkgconfig/unanimity.pc
Collapse this list.
Dependency lines:
  • unanimity>0:biology/unanimity
No installation instructions:
This port has been deleted.
PKGNAME: unanimity
Flavors: there is no flavor information for this port.
distinfo:
TIMESTAMP = 1551014614 SHA256 (PacificBiosciences-unanimity-v3.4.1_GH0.tar.gz) = fccb2cf14cdc324592724df5699a113a04ce6d4f40f00c68ca3df541e17b4f35 SIZE (PacificBiosciences-unanimity-v3.4.1_GH0.tar.gz) = 6493661
No package information for this port in our database
Sometimes this happens. Not all ports have packages.
Dependencies
NOTE: FreshPorts displays only information on required and default dependencies. Optional dependencies are not covered.
Build dependencies:
  1. seqan>=2.4.0 : biology/seqan
  2. swig30>=3.0 : devel/swig30
  3. py27-numpy>0 : math/py-numpy@py27
  4. meson : devel/meson
  5. ninja : devel/ninja
  6. pkgconf>=1.3.0_1 : devel/pkgconf
  7. python2.7 : lang/python27
Runtime dependencies:
  1. py27-numpy>0 : math/py-numpy@py27
  2. python2.7 : lang/python27
Library dependencies:
  1. libhts.so : biology/htslib
  2. libboost_regex.so : devel/boost-libs
  3. libpbbam.so.0.18.0 : biology/pbbam
  4. libpbcopper.so.0.4.1 : biology/pbcopper
There are no ports dependent upon this port
Configuration Options:
No options to configure
Options name:
N/A
USES:
compiler:c++14-lang localbase meson pkgconfig python:2.7
FreshPorts was unable to extract/find any pkg message
Master Sites:
Expand this list (1 items)
Collapse this list.
  1. https://codeload.github.com/PacificBiosciences/unanimity/tar.gz/v3.4.1?dummy=/
Collapse this list.

There are no commits on branch 2022Q3 for this port
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