| non port: biology/vcflib/Makefile |
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SVNWeb
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Number of commits found: 20 |
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Thu, 9 Feb 2023
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[ 15:35 Jason W. Bacon (jwb)  ]    5fee60f
biology/vcflib: Update to 1.0.7
Fixes regression in 1.0.6
Made Zig language support a default off option
Zig is experimental and problematic
Reported by: portscout
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Tue, 31 Jan 2023
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[ 16:25 Jason W. Bacon (jwb) ] 0d9ff1b
biology/vcflib: Unbreak build on aarch64, probably others
Patch out hard-coded -march=native, not supported by clang aarch64
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Mon, 30 Jan 2023
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[ 22:05 Jason W. Bacon (jwb) ] 4512fe6
biology/vcflib: Update to 1.0.6
A few minor upstream fixes
Unbundle WFA2-lib, which may be useful outside vcflib
Update some submodules to latest commit (no recent releases available)
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Thu, 26 Jan 2023
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[ 14:14 Jason W. Bacon (jwb) ] 62e0649
biology/vcflib: Patch in time.h for struct timespec
Forgot to add patch file to repo during upgrade
Needed on 12.3-RELEASE
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Mon, 23 Jan 2023
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[ 23:51 Jan Beich (jbeich) ] ded326a
lang/zig: rebuild consumers after 91552559ae79
Propagate standard library and miscompilation fixes into binary packages.
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Sun, 22 Jan 2023
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[ 17:13 Jason W. Bacon (jwb) ] 459cb89
biology/vcflib: Update to 1.0.5
Numerous new features and enhancements
Changes: https://github.com/vcflib/vcflib/tags
Reported by: portscout
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Fri, 6 Jan 2023
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[ 01:29 Jason W. Bacon (jwb) ] edf777d
biology/vcflib: Bump PORTREVISION for biology/htslib update
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Wed, 7 Sep 2022
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[ 21:10 Stefan Eßer (se) ] b7f0544 (Only the first 10 of 27931 ports in this commit are shown above.  )
Add WWW entries to port Makefiles
It has been common practice to have one or more URLs at the end of the
ports' pkg-descr files, one per line and prefixed with "WWW:". These
URLs should point at a project website or other relevant resources.
Access to these URLs required processing of the pkg-descr files, and
they have often become stale over time. If more than one such URL was
present in a pkg-descr file, only the first one was tarnsfered into
the port INDEX, but for many ports only the last line did contain the
port specific URL to further information.
There have been several proposals to make a project URL available as
a macro in the ports' Makefiles, over time.
(Only the first 15 lines of the commit message are shown above )
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Wed, 29 Jun 2022
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[ 14:53 Stefan Eßer (se) ] b521142
Fix CONFLICTS_INSTALL in benchmarks and biology
Approved by: portmgr (implicit)
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Sun, 6 Feb 2022
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[ 18:36 Stefan Eßer (se) ] bdd2d4a (Only the first 10 of 69 ports in this commit are shown above. )
Update CONFLICTS definitions in categories a* to c*
Update the CONFLICTS definitions of ports in the following categories:
- accessibility
- archivers
- audio
- benchmarks
- biology
- cad
- chinese
- comms
- converters
An attempt has been made to use generic conflicts patterns that do not
have to be updated whenever a new version of a conflicting port is
added to the ports system.
There is a misunderstanding that the port being built/installed has to
be omitted from the conflicts pattern. This is not true - the port
being built is implicitly non-conflicting due to logic in bsd.port.mk.
Approved by: portmgr (implicit)
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Fri, 28 Jan 2022
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[ 00:09 Jason W. Bacon (jwb) ] 8859320
biology/vcflib: Update to 1.0.3
Several new commands
A few bug fixes and enhancements
Changes: https://github.com/vcflib/vcflib/tags
Reported by: portscout
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Thu, 16 Dec 2021
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[ 21:49 Piotr Kubaj (pkubaj) ] ed59e0d
biology/vcflib: unbreak on riscv64
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Thu, 4 Nov 2021
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[ 14:23 Jason W. Bacon (jwb) ] e02229c
biology/vcflib: Update to 1.0.2
Switch to github submodules for most deps rather than patch build system
Fixes build on powerpc64 and aarch64, possibly others
Changes: https://github.com/vcflib/vcflib/tags
PR: 259622
Reported by: pkubaj
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Wed, 7 Apr 2021
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[ 08:09 Mathieu Arnold (mat) ] cf118cc (Only the first 10 of 8873 ports in this commit are shown above. )
One more small cleanup, forgotten yesterday.
Reported by: lwhsu
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Tue, 6 Apr 2021
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[ 14:31 Mathieu Arnold (mat) ] 305f148 (Only the first 10 of 29333 ports in this commit are shown above. )
Remove # $FreeBSD$ from Makefiles.
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Sun, 28 Mar 2021
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[ 16:39 pkubaj ]  
biology/vcflib: fix build on powerpc64le
Use GCC for its SSE -> AltiVec translation:
In file included from src/ssw.cpp:38:
In file included from /usr/lib/clang/11.0.1/include/emmintrin.h:13:
In file included from /usr/lib/clang/11.0.1/include/xmmintrin.h:13:
/usr/lib/clang/11.0.1/include/mmintrin.h:33:5: error: use of undeclared
identifier '__builtin_ia32_emms'; did you mean '__builtin_isless'?
__builtin_ia32_emms();
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Sat, 2 Jan 2021
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[ 01:46 linimon ] (Only the first 10 of 34 ports in this commit are shown above. )
For ports on riscv64 that fail the same (or similar ways) to aarch64, mark
them BROKEN.
While here, pet portlint (Makevar order).
Approved by: portmgr (tier-2 blanket)
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Mon, 3 Aug 2020
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[ 17:40 jwb ] (Only the first 10 of 12 ports in this commit are shown above. )
biology/htslib: Upgrade to 1.10.2
Numerous bug fixes and enhancements since 1.9:
https://github.com/samtools/htslib/tags
Bump PORTREVISION on dependents that don't require additional patching
PR: 248089
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Fri, 22 Jun 2018
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[ 00:03 linimon ]
Mark these ports as broken on aarch64.
Approved by: portmgr (tier-2 blanket)
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Tue, 17 Apr 2018
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[ 03:11 jwb ]
biology/vcflib: C++ library and CLI tools for parsing and manipulating VCF files
Approved by: jrm (mentor)
Differential Revision: https://reviews.freebsd.org/D15109
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Number of commits found: 20 |
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