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non port: biology/vcftools/Makefile

Number of commits found: 11

Sunday, 16 Jul 2023
01:29 Jason W. Bacon (jwb) search for other commits by this committer
biology/vcftools: Unbreak build with clang 16

Add -std=c++14

Reported by:    pkg-fallout
commit hash: 76d07b4e582d22ea8926a4abae7021b0fa2d9e68 commit hash: 76d07b4e582d22ea8926a4abae7021b0fa2d9e68 commit hash: 76d07b4e582d22ea8926a4abae7021b0fa2d9e68 commit hash: 76d07b4e582d22ea8926a4abae7021b0fa2d9e68 76d07b4
Wednesday, 7 Sep 2022
21:10 Stefan E├čer (se) search for other commits by this committer
Add WWW entries to port Makefiles

It has been common practice to have one or more URLs at the end of the
ports' pkg-descr files, one per line and prefixed with "WWW:". These
URLs should point at a project website or other relevant resources.

Access to these URLs required processing of the pkg-descr files, and
they have often become stale over time. If more than one such URL was
present in a pkg-descr file, only the first one was tarnsfered into
the port INDEX, but for many ports only the last line did contain the
port specific URL to further information.

There have been several proposals to make a project URL available as
a macro in the ports' Makefiles, over time.

This commit implements such a proposal and moves one of the WWW: entries
of each pkg-descr file into the respective port's Makefile. A heuristic
attempts to identify the most relevant URL in case there is more than
one WWW: entry in some pkg-descr file. URLs that are not moved into the
Makefile are prefixed with "See also:" instead of "WWW:" in the pkg-descr
files in order to preserve them.

There are 1256 ports that had no WWW: entries in pkg-descr files. These
ports will not be touched in this commit.

The portlint port has been adjusted to expect a WWW entry in each port
Makefile, and to flag any remaining "WWW:" lines in pkg-descr files as
deprecated.

Approved by:		portmgr (tcberner)
commit hash: b7f05445c00f2625aa19b4154ebcbce5ed2daa52 commit hash: b7f05445c00f2625aa19b4154ebcbce5ed2daa52 commit hash: b7f05445c00f2625aa19b4154ebcbce5ed2daa52 commit hash: b7f05445c00f2625aa19b4154ebcbce5ed2daa52 b7f0544
Saturday, 25 Sep 2021
20:28 Bernhard Froehlich (decke) search for other commits by this committer
biology/vcftools: Add CPE information

Approved by:	portmgr (blanket)
commit hash: 311f6fb1d3d05f50c8af921c9cc9e06e17550aeb commit hash: 311f6fb1d3d05f50c8af921c9cc9e06e17550aeb commit hash: 311f6fb1d3d05f50c8af921c9cc9e06e17550aeb commit hash: 311f6fb1d3d05f50c8af921c9cc9e06e17550aeb 311f6fb
Wednesday, 7 Apr 2021
08:09 Mathieu Arnold (mat) search for other commits by this committer
One more small cleanup, forgotten yesterday.
Reported by:	lwhsu
commit hash: cf118ccf875508b9a1c570044c93cfcc82bd455c commit hash: cf118ccf875508b9a1c570044c93cfcc82bd455c commit hash: cf118ccf875508b9a1c570044c93cfcc82bd455c commit hash: cf118ccf875508b9a1c570044c93cfcc82bd455c cf118cc
Tuesday, 6 Apr 2021
14:31 Mathieu Arnold (mat) search for other commits by this committer
Remove # $FreeBSD$ from Makefiles.
commit hash: 305f148f482daf30dcf728039d03d019f88344eb commit hash: 305f148f482daf30dcf728039d03d019f88344eb commit hash: 305f148f482daf30dcf728039d03d019f88344eb commit hash: 305f148f482daf30dcf728039d03d019f88344eb 305f148
Saturday, 4 Aug 2018
01:29 jwb search for other commits by this committer
biology/vcftools: Update to 0.1.16, a security release

Approved by:    jrm (mentor)
Differential Revision:  https://reviews.freebsd.org/D16587
Original commitRevision:476330 
Wednesday, 31 Jan 2018
01:07 jwb search for other commits by this committer
Multiple ports:
Change maintainer email bacon4000@gmail.com to jwb@FreeBSD.org
Remove Created by comments for same user

Approved by: jrm (mentor)
Differential Revision:  https://reviews.freebsd.org/D14128
Original commitRevision:460452 
Monday, 27 Nov 2017
23:05 jwb search for other commits by this committer
biology/vcftools: Upgrade to latest release 0.1.15

Approved by:    jrm (mentor)
Differential Revision:  https://reviews.freebsd.org/D13276
Original commitRevision:455000 
Tuesday, 3 Jan 2017
17:06 jbeich search for other commits by this committer
Assume "pkg-config zlib" works after 9.x reached EOL

Many ports passed ZLIB_CFLAGS="-I/usr/include" ZLIB_LIBS="-L/usr/lib -lz"
which is unsafe at least with lang/gcc* that override some system headers
and have newer libgcc_s.so that our old version in base may not be
forward-compatible with.
Original commitRevision:430483 
Saturday, 26 Nov 2016
10:09 mat search for other commits by this committer
Fixup USE_GITHUB usage.

It already sets DISTNAME to a very nice unique name, do not set it
yourself.

Sponsored by:	Absolight
Original commitRevision:427136 
Friday, 26 Feb 2016
17:07 rakuco search for other commits by this committer
New port: biology/vcftools.

A set of tools written in Perl and C++ for working with VCF files, such as
those generated by the 1000 Genomes Project.

WWW: https://github.com/vcftools/vcftools

PR:		206926
Submitted by:	Jason Bacon <bacon4000@gmail.com>
Original commitRevision:409624 

Number of commits found: 11