non port: biology/velvet/Makefile |
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Number of commits found XX: 16 |
Thu, 11 Jan 2018
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[ 18:09 danfe ] 
458761 benchmarks/httperf/Makefile
458761 biology/velvet/Makefile
458761 comms/tio/Makefile
458761 databases/pgbarman/Makefile
458761 databases/powerarchitect/Makefile
458761 deskutils/showdown/Makefile
458761 devel/api-sanity-autotest/Makefile
458761 devel/git-modes/Makefile
458761 devel/gtkparasite/Makefile
458761 devel/jsmin/Makefile
(Only the first 10 of 18 ports in this commit are shown above. )
- Convert to option helper install target (add OPTIONS_DEFINE=DOCS
when it was missing)
- Invoke INSTALL_DATA where appropriate instead of INSTALL_MAN
- Fix some whitespace and formatting bugs along the way
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Mon, 19 Jan 2015
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[ 17:43 marino ] 
377443 biology/velvet/Makefile
377443 graphics/apngasm/Makefile
377443 graphics/xaos/Makefile
377443 news/slrn/Makefile
Designatate 4 ports as unsafe for parallel building
All had similar errors that it couldn't find something during the build,
yet built on a subsequent pass with no adjustments. Most I've seen before
on previous bulk runs.
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Wed, 26 Nov 2014
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[ 13:08 mat ] 
373448 CHANGES
373448 Mk/Uses/perl5.mk
373448 Mk/bsd.default-versions.mk
373448 Mk/bsd.port.mk
373448 UPDATING
373448 archivers/dpkg/Makefile
373448 archivers/p5-Archive-Any-Lite/Makefile
373448 archivers/p5-Archive-Any-Lite/pkg-plist
373448 archivers/p5-Archive-Any-Plugin-Rar/Makefile
373448 archivers/p5-Archive-Any-Plugin-Rar/pkg-plist
(Only the first 10 of 10077 ports in this commit are shown above. )
Change the way Perl modules are installed, update the default Perl to 5.18.
Before, we had:
site_perl : lib/perl5/site_perl/5.18
site_perl/perl_arch : lib/perl5/site_perl/5.18/mach
perl_man3 : lib/perl5/5.18/man/man3
Now we have:
site_perl : lib/perl5/site_perl
site_arch : lib/perl5/site_perl/mach/5.18
perl_man3 : lib/perl5/site_perl/man/man3
Modules without any .so will be installed at the same place regardless of the (Only the first 15 lines of the commit message are shown above )
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Sun, 19 Oct 2014
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[ 07:38 mva ] 
371171 benchmarks/pybench/Makefile
371171 benchmarks/tsung/Makefile
371171 biology/py-biopython/Makefile
371171 biology/pycogent/Makefile
371171 biology/pyfasta/Makefile
371171 biology/python-nexus/Makefile
371171 biology/seqan/Makefile
371171 biology/velvet/Makefile
- Convert ports from benchmarks/ and biology/ to new USES=python
Approved by: portmgr (implicit)
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Tue, 29 Jul 2014
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[ 19:11 adamw ] 
363374 archivers/ha/Makefile
363374 archivers/unalz/Makefile
363374 astro/gpsman/Makefile
363374 audio/amrcoder/Makefile
363374 audio/chordpack/Makefile
363374 audio/cmt/Makefile
363374 audio/enscribe/Makefile
363374 audio/funktrackergold/Makefile
363374 audio/ladspa/Makefile
363374 audio/libconvolve/Makefile
(Only the first 10 of 436 ports in this commit are shown above. )
Convert a bunch of EXTRACT_SUFX=... into USES=tar:...
Approved by: portmgr (not really, but touches unstaged ports)
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Fri, 20 Jun 2014
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[ 12:54 rakuco ] 
358567 biology/velvet/Makefile
Fix shebang line in Perl and Python scripts.
PR: 191146
Submitted by: mzaki@m.u-tokyo.ac.jp (maintainer)
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Tue, 17 Jun 2014
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[ 21:39 rakuco ] 
358183 biology/velvet/Makefile
358183 biology/velvet/distinfo
358183 biology/velvet/files/patch-Makefile
Update to 1.2.10.
PR: 191129
Submitted by: mzaki@m.u-tokyo.ac.jp (maintainer)
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Sun, 1 Jun 2014
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[ 11:33 ohauer ] 
356099 biology/velvet/Makefile
- add stage support
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Thu, 13 Mar 2014
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[ 07:41 miwi ] 
348042 biology/garlic/Makefile
348042 biology/mafft/Makefile
348042 biology/mopac/Makefile
348042 biology/mummer/Makefile
348042 biology/muscle/Makefile
348042 biology/paml/Makefile
348042 biology/phylip/Makefile
348042 biology/pymol/Makefile
348042 biology/velvet/Makefile
348042 biology/xmolwt/Makefile
- Convert USE_GMAKE to USES
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Fri, 21 Feb 2014
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[ 13:35 ehaupt ] 
345397 biology/biojava/Makefile
345397 biology/consed/Makefile
345397 biology/finchtv/Makefile
345397 biology/genpak/Makefile
345397 biology/mummer/Makefile
345397 biology/njplot/Makefile
345397 biology/p5-bioperl-run/Makefile
345397 biology/p5-bioperl/Makefile
345397 biology/paml/Makefile
345397 biology/velvet/Makefile
Remove trailing whitespaces from category biology
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Mon, 10 Feb 2014
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[ 13:54 ehaupt ] 
343634 archivers/aolserver-nszlib/Makefile
343634 archivers/dact/Makefile
343634 archivers/freeze/Makefile
343634 archivers/javatar/Makefile
343634 archivers/lha-ac/Makefile
343634 archivers/libpar2/Makefile
343634 archivers/lzo2/Makefile
343634 archivers/makeself/Makefile
343634 archivers/py-lzma/Makefile
343634 archivers/ruby-libarchive/Makefile
(Only the first 10 of 581 ports in this commit are shown above. )
According to the Porter's Handbook (5.12.2.3.) default options must be added to
OPTIONS_DEFINE. This policy has been implemented only recently that's why we
have many ports violating this policy.
This patch adds the default options specified in the Porter's Handbook to
OPTIONS_DEFINE where they are being used. Ports maintained by
gnome@FreeBSD.org, kde@FreeBSD.org and x11@FreeBSD.org have been excluded.
Approved by: portmgr (bapt)
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Fri, 3 Jan 2014
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[ 15:46 adamw ] 
338550 biology/biojava/Makefile
338550 biology/blast/Makefile
338550 biology/consed/Makefile
338550 biology/finchtv/Makefile
338550 biology/mafft/Makefile
338550 biology/mummer/Makefile
338550 biology/njplot/Makefile
338550 biology/p5-bioperl-run/Makefile
338550 biology/p5-bioperl/Makefile
338550 biology/paml/Makefile
(Only the first 10 of 14 ports in this commit are shown above. )
Convert biology to MDOCS and MEXAMPLES
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Fri, 20 Sep 2013
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[ 15:55 bapt ] 
327709 biology/ariadne/Makefile
327709 biology/artemis/Makefile
327709 biology/avida/Makefile
327709 biology/babel/Makefile
327709 biology/biococoa/Makefile
327709 biology/biojava/Makefile
327709 biology/blast/Makefile
327709 biology/blat/Makefile
327709 biology/boinc-simap/Makefile
327709 biology/chemeq/Makefile
(Only the first 10 of 94 ports in this commit are shown above. )
Add NO_STAGE all over the place in preparation for the staging support (cat:
biology)
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Sat, 7 Sep 2013
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[ 07:44 az ] 
326575 biology/consed/Makefile
326575 biology/p5-Bio-ASN1-EntrezGene/Makefile
326575 biology/p5-bioperl-run/Makefile
326575 biology/velvet/Makefile
326575 devel/p5-Config-YAML/Makefile
326575 devel/p5-MooseX-CompileTime-Traits/Makefile
326575 devel/p5-Sys-Cpu/Makefile
326575 sysutils/backupme/Makefile
326575 sysutils/p5-BSD-Sysctl/Makefile
326575 sysutils/p5-Filesys-DiskUsage/Makefile
(Only the first 10 of 19 ports in this commit are shown above. )
- convert to the new perl5 framework
Approved by: portmgr (bapt@, blanket)
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Thu, 9 Jun 2011
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[ 16:33 jlaffaye ]
1.2 biology/velvet/Makefile
1.3 biology/velvet/distinfo
1.2 biology/velvet/files/patch-Makefile
1.2 biology/velvet/files/patch-contrib-VelvetOptimiser-VelvetOptimiser.pl
1.2 biology/velvet/files/patch-src-run.c
Update to 1.1.04
PR: ports/157527
Submitted by: Motomichi Matsuzaki <mzaki@m.u-tokyo.ac.jp>
Approved by: bapt (mentor)
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Sat, 7 Nov 2009
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[ 01:23 amdmi3 ]
1.115 biology/Makefile
1.1 biology/velvet/Makefile
1.1 biology/velvet/distinfo
1.1 biology/velvet/files/patch-Makefile
1.1 biology/velvet/files/patch-contrib-VelvetOptimiser-VelvetOptimiser.pl
1.1 biology/velvet/files/patch-src-run.c
1.1 biology/velvet/pkg-descr
Velvet is a de novo genomic assembler specially designed for short read
sequencing technologies, such as Solexa or 454, developed by Daniel Zerbino
and Ewan Birney at the European Bioinformatics Institute (EMBL-EBI).
Citation:
Velvet: algorithms for de novo short read assembly using de Bruijn graphs.
D.R. Zerbino and E. Birney. Genome Research 18: 821-829 (2008)
WWW: http://www.ebi.ac.uk/~zerbino/velvet/
PR: 140147
Submitted by: Motomichi Matsuzaki <mzaki@m.u-tokyo.ac.jp>
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Number of commits found XX: 16 |