| non port: biology/vsearch/Makefile |
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SVNWeb
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Number of commits found: 19 |
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Sat, 8 Jul 2023
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[ 19:10 Jason W. Bacon (jwb)  ]    168ecf0
biology/vsearch: Update to 2.23.0
Numerous minor fixes and enhancements
Changes: https://github.com/torognes/vsearch/releases
Reported by: portscout
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Wed, 21 Sep 2022
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[ 16:24 Jason W. Bacon (jwb) ] 001947d
biology/vsearch: Update to 2.22.1
Add the derep_smallmem command for dereplication with less memory usage
Changes: https://github.com/torognes/vsearch/releases
Reported by: portscout
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Fri, 16 Sep 2022
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[ 16:17 Jason W. Bacon (jwb) ] de24c3e
biology/vsearch: Update to 2.21.2
Fix problems with the --lcaout option
Changes: https://github.com/torognes/vsearch/tags
Reported by: portscout
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Wed, 7 Sep 2022
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[ 21:10 Stefan Eßer (se) ] b7f0544 (Only the first 10 of 27931 ports in this commit are shown above.  )
Add WWW entries to port Makefiles
It has been common practice to have one or more URLs at the end of the
ports' pkg-descr files, one per line and prefixed with "WWW:". These
URLs should point at a project website or other relevant resources.
Access to these URLs required processing of the pkg-descr files, and
they have often become stale over time. If more than one such URL was
present in a pkg-descr file, only the first one was tarnsfered into
the port INDEX, but for many ports only the last line did contain the
port specific URL to further information.
There have been several proposals to make a project URL available as
a macro in the ports' Makefiles, over time.
(Only the first 15 lines of the commit message are shown above )
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Sun, 23 Jan 2022
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[ 22:32 Jason W. Bacon (jwb) ] f67392e
biology/vsearch: Update to 2.21.1
Adds the sample, qsegout and tsegout options. It also enables the use of
UDB databases with uchime_ref.
Changes: https://github.com/torognes/vsearch/releases
Reported by: portscout
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Sat, 8 Jan 2022
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[ 00:04 Jason W. Bacon (jwb) ] 231919f
biology/vsearch: Update to 2.19.0
A few bug fixes, new subcommands and options
Changes: https://github.com/torognes/vsearch/tags
Reporte by: portscout
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Mon, 25 Oct 2021
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[ 12:58 Alexey Dokuchaev (danfe) ] 61b6613 (Only the first 10 of 79 ports in this commit are shown above. )
Style: improve ONLY_FOR_ARCHS_REASON (grammar, markup, etc.)
ONLY_FOR_ARCHS_REASON is used as part of the sentence and thus should
start with lower-case letter and not end with a period which is added
by the framework, similar to other knobs like BROKEN, IGNORE, et al.
While here, remove needless quoting, add missing Oxford comma, expand
contractions and jargonisms, use correct spelling for proper names.
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Sat, 19 Jun 2021
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[ 12:33 Jason W. Bacon (jwb) ] d571f1f
biology/vsearch: Update to 2.17.1
Changes: https://github.com/torognes/vsearch/releases
Also enabled powerpc64le
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Sat, 10 Apr 2021
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[ 14:02 Jason W. Bacon (jwb) ] a5f08a7
biology/vsearch: Update to 2.17.0
Afterthoughts from the recent 2.16.0 release
(Minor bug fixes and enhancements to the new orient subcommand)
Reported by: portscout
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Wed, 7 Apr 2021
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[ 08:09 Mathieu Arnold (mat) ] cf118cc (Only the first 10 of 8873 ports in this commit are shown above. )
One more small cleanup, forgotten yesterday.
Reported by: lwhsu
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Tue, 6 Apr 2021
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[ 14:31 Mathieu Arnold (mat) ] 305f148 (Only the first 10 of 29333 ports in this commit are shown above. )
Remove # $FreeBSD$ from Makefiles.
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Wed, 24 Mar 2021
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[ 18:43 jwb ]  
biology/vsearch: Update to 2.16.0
Add "orient" subcommand
A few other fixes and enhancements
Reported by: portscout
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Sat, 30 Jan 2021
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[ 15:31 jwb ]
biology/vsearch: Update to 2.15.2
Code clean up and modernization
Reported by: portscout
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Sat, 16 Jan 2021
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[ 17:51 pkubaj ]
biology/vsearch: enable on powerpc64le
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Sat, 20 Jun 2020
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[ 14:31 jwb ]
biology/vsearch: Update to 2.15.0
Numerous minor enhancements
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Wed, 19 Feb 2020
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[ 22:34 jwb ]
biology/vsearch: Upgrade to 2.14.2
Numerous small bug fixes and enhancements
Reported by: portscout
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Sat, 11 May 2019
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[ 13:42 jwb ]
biology/vsearch: Update to 2.13.4
FreeBSD patches incorporated into new upstream release
Reported by: portscout
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Thu, 9 May 2019
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[ 22:12 jwb ]
biology/vsearch: Remove powerpc64 support
Requires little endian mode and FreeBSD currently does not support it
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[ 21:28 jwb ]
biology/vsearch: Versatile open-source tool for metagenomics
VSEARCH supports de novo and reference based chimera detection, clustering,
full-length and prefix dereplication, rereplication, reverse complementation,
masking, all-vs-all pairwise global alignment, exact and global alignment
searching, shuffling, subsampling and sorting. It also supports FASTQ file
analysis, filtering, conversion and merging of paired-end reads.
The aim of this project is to create an alternative to the USEARCH tool
developed by Robert C. Edgar (2010).
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Number of commits found: 19 |
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