12:32 Jason W. Bacon (jwb) 

biology/vsearch: Update to 2.26.1

A few minor enhancements
Changes: https://github.com/torognes/vsearch/releases

Reported by:    portscout

    92927bb

15:19 Jason W. Bacon (jwb) 

biology/vsearch: Update to 2.25.0

chimeras_denovo: Allow user to specify mismatch tolerance

Changes: https://github.com/torognes/vsearch/releases

    aafea13

14:09 Jason W. Bacon (jwb) 

biology/vsearch: Update to 2.24.0

Upstream code cleanup
Changes: https://github.com/torognes/vsearch/releases

Reported by:    portscout

    f71a4e8

19:10 Jason W. Bacon (jwb) 

biology/vsearch: Update to 2.23.0

Numerous minor fixes and enhancements
Changes: https://github.com/torognes/vsearch/releases

Reported by:    portscout

    168ecf0

16:24 Jason W. Bacon (jwb) 

biology/vsearch: Update to 2.22.1

Add the derep_smallmem command for dereplication with less memory usage
Changes:    https://github.com/torognes/vsearch/releases

Reported by:    portscout

    001947d

16:17 Jason W. Bacon (jwb) 

biology/vsearch: Update to 2.21.2

Fix problems with the --lcaout option
Changes:        https://github.com/torognes/vsearch/tags

Reported by:    portscout

    de24c3e

22:32 Jason W. Bacon (jwb) 

biology/vsearch: Update to 2.21.1

Adds the sample, qsegout and tsegout options. It also enables the use of
UDB databases with uchime_ref.

Changes:        https://github.com/torognes/vsearch/releases

Reported by:    portscout

    f67392e

00:04 Jason W. Bacon (jwb) 

biology/vsearch: Update to 2.19.0

A few bug fixes, new subcommands and options

Changes:        https://github.com/torognes/vsearch/tags
Reporte by:     portscout

    231919f

12:33 Jason W. Bacon (jwb) 

biology/vsearch: Update to 2.17.1

Changes:    https://github.com/torognes/vsearch/releases

Also enabled powerpc64le

    d571f1f

14:02 Jason W. Bacon (jwb) 

biology/vsearch: Update to 2.17.0

Afterthoughts from the recent 2.16.0 release
(Minor bug fixes and enhancements to the new orient subcommand)

Reported by:    portscout

    a5f08a7

18:43 jwb 

biology/vsearch: Update to 2.16.0

Add "orient" subcommand
A few other fixes and enhancements

Reported by:    portscout

 

15:31 jwb 

biology/vsearch: Update to 2.15.2

Code clean up and modernization

Reported by:    portscout

 

14:31 jwb 

biology/vsearch: Update to 2.15.0

Numerous minor enhancements

 

22:34 jwb 

biology/vsearch: Upgrade to 2.14.2

Numerous small bug fixes and enhancements

Reported by:    portscout

 

13:42 jwb 

biology/vsearch: Update to 2.13.4

FreeBSD patches incorporated into new upstream release

Reported by:    portscout

 

21:28 jwb 

biology/vsearch: Versatile open-source tool for metagenomics

VSEARCH supports de novo and reference based chimera detection, clustering,
full-length and prefix dereplication, rereplication, reverse complementation,
masking, all-vs-all pairwise global alignment, exact and global alignment
searching, shuffling, subsampling and sorting. It also supports FASTQ file
analysis, filtering, conversion and merging of paired-end reads.

The aim of this project is to create an alternative to the USEARCH tool
developed by Robert C. Edgar (2010).