16:41 Joseph Mingrone (jrm) 

math/R: Update to 4.3.3

Changes:	https://hypatia.math.ethz.ch/pipermail/r-announce/2024/000699.html
Sponsored by:	The FreeBSD Foundation

    9baeed1

14:08 Muhammad Moinur Rahman (bofh) 

math/R: Moved man to share/man

Approved by:    portmgr (blanket)

    dd38bb3

22:07 Joseph Mingrone (jrm) 

math/R: Update to 4.3.2

Changes:	https://hypatia.math.ethz.ch/pipermail/r-announce/2023/000697.html
Sponsored by:	The FreeBSD Foundation

    7cade24

17:42 Joseph Mingrone (jrm) 

math/R: Update to 4.3.0

Changes:	https://hypatia.math.ethz.ch/pipermail/r-announce/2023/000691.html
Sponsored by:	The FreeBSD Foundation

    c02a0b9

17:30 Joseph Mingrone (jrm) 

math/R: Update to 4.20

https://hypatia.math.ethz.ch/pipermail/r-announce/2022/000683.html

Sponsored by:	The FreeBSD Foundation

    a7325bb

16:59 Joseph Mingrone (jrm) 

math/R: Update to 4.1.2

https://stat.ethz.ch/pipermail/r-announce/2021/000677.html

    3f3779c

20:28 Joseph Mingrone (jrm) 

math/R: Fix build with clang/openmp 13

The mgcv package is one of the recommended packages to be installed with
R.  A problem with mgcv and clang/openmp 13 is that mgcv versions prior
to 1.8-37 place 'include <omp.h>' after 'include <R.h>'.  This causes a
conflict between '#define match' and an openmp pragma line, which uses
match().  This problem was fixed in mgcv 1.8-37, so replace mgcv 1.8-36
with this newer version.

While here, incorporate formatting changes suggested by portclippy and
portfmt.

PR:		258887
Approved by:	dim
Differential Revision:	https://reviews.freebsd.org/D32280

    16c89d1

23:14 Joseph Mingrone (jrm) 

math/R: Update to 4.1.0

https://cran.r-project.org/doc/manuals/r-release/NEWS.html

    42a018f

19:52 Joseph Mingrone (jrm) 

math/R: Update to bug-fix release, 4.0.5

https://stat.ethz.ch/pipermail/r-announce/2020
https://cran.r-project.org/doc/manuals/r-release/NEWS.html

    f0505da

02:29 jrm 

math/R: Update to version 4.0.4

https://cran.r-project.org/doc/manuals/r-release/NEWS.html

 

15:12 jrm 

math/R: Update to version 4.0.1

Upstream changes:
https://stat.ethz.ch/pipermail/r-announce/2020/000655.html

 

16:07 jrm 

math/R: Update to version 4.0.0

Upstream changes:
https://stat.ethz.ch/pipermail/r-announce/2020/000653.html

Also bump PORTREVISION of ports that depend on math/R.

Submitted by:	wen (in part)
Reviewed by:	jwb, Rainer Hurling <rhurlin@gwdg.de>, thierry
Differential Revision:	https://reviews.freebsd.org/D24572

 

19:50 jrm 

math/R: Update to version 3.6.2

See the NEWS file for upstream changes:
https://cran.r-project.org/doc/manuals/r-release/NEWS.html

 

19:10 jrm 

math/R: Upgrade to version 3.6.0

Upstream changes: See 'CHANGES IN R 3.6.0' from
https://cran.r-project.org/doc/manuals/r-devel/NEWS.html

 

02:32 jrm 

math/R: Update to version 3.5.2

This is mostly a bug-fix release.  For details see 'CHANGES IN R 3.5.2' in
the release notes.
https://cran.r-project.org/doc/manuals/r-devel/NEWS.html

 

20:58 jrm 

math/R: Update to version 3.5.1

 

22:51 jrm 

math/R: Update to version 3.5.0

Upstream changes: https://cran.r-project.org/doc/manuals/r-devel/NEWS.html

 

14:59 jrm 

math/R: Update to version 3.4.3

Other port changes:
- Add armv6 and armv7 to ONLY_FOR_ARCHS; armv6 and armv7 were tested by mmel@
  and working on 11.
- Remove LIBR option and always build the shared library.  This was requested by
  yuri@ and a RFC was posted on ports@ with no response.
- Exclude OPENMP option for everything except amd64 and i386.
- Turn on OPENMP option by default to match upstream.
- Turn off TCLTK option by default.
- LLVM, which gets pulled in with FLANG, provides libomp, so only depend on
  devel/openmp, when GFORTRAN and OPENMP are on.

 

14:19 jrm 

math/R: set SONAME for libraries under lib/R/lib

PR:		219776
Submitted by:	pawel
Reviewed by:	pawel, mat
Differential Revision:	https://reviews.freebsd.org/D11615

 

17:07 jrm 

math/R: Update to version 3.4.1

Upstream changes:
https://cran.r-project.org/doc/manuals/r-release/NEWS.html

Port changes:
- Add aarch64 to ONLY_FOR_ARCHS [1]
- Add off-by-default option for experimental fortran support via flang [2]

Submitted by:	[1] andrew, [2] yuri@rawbw.com

 

15:47 jrm 

math/R: Update to version 3.4.0

The configure script now detects the correct zlib version, so setting the
r_cv_header_zlib_h is no longer necessary.

Approved by:	swills (mentor, implicit)

 

01:50 jrm 

math/R: Update to version 3.3.3.

Upstream changes: https://cran.r-project.org/doc/manuals/r-release/NEWS.html

Approved by:	swill (mentor, implicit)

 

21:32 jrm 

Fix build issue when the LTO option is enabled, do not register
${PREFIX}/lib/R/lib with ldconfig, and fix typo.

GCC 4.9 now generates slim object files which only contain intermediate
language representation for LTO. This means, either -ffat-lto-objects must
be used to create files which also contain object code or gcc-ar/gcc-ranlib
must be used to create static libraries suitable for LTO processing. This
patch sets AR/RANLIB to gcc-ar/gcc-ranlib.

The libraries under ${PREFIX}/lib/R/lib are not intended (by upstream) to
be registered with ldconfig, but are opened by dlopen(3). This means pkg
will not register shared library dependencies, so we will have to adjust
and bump ports as necessary. When necessary, unfortunately, is unclear
based on how things work upstream.

Fix typo: OPENMP_USE=compiler:openmp should have been
OPENMP_USES=compiler:openmp.

Bump PORTREVISION.

PR:	214785
        214666
Reported by:	taozhenext@gmail.com (214785), dbn (214666)
Approved by:	swills (mentor)
Differential Revision:	https://reviews.freebsd.org/D8650

 

16:24 jrm 

math/R: More docuementation changes.

The feedback has been clear. Installing the TeX-dependent documentation
files by default is bad for users, even if that means one documentation
knob does not control the installation of all documentation files.

Reported by:	mat marino
Reviewed by:	mat
Approved by:	swills (mentor)
Differential Revision:	https://reviews.freebsd.org/D8440

 

13:55 jrm 

math/R: Revert documentation changes and bump PORTREVISION

In an attempt to simplify the handling of documentation for users, changes
were made in the last commit. When the documentation knob was off, (almost)
no HTML, PDF, etc. files or their sources were installed, and when the knob
was on, all these files were installed. Because some of these documentation
files depended on some very large TeX ports, despite the usual convention,
the knob was turned off by default. Unfortunately, this caused problems for
a few R-dependent ports, because they copy documentation files from math/R
when they are installed.

Reported by:	antoine
Reviewed by:	mat
Approved by:	swills (mentor)
Differential Revision:	https://reviews.freebsd.org/D8429

 

20:36 jrm 

math/R: Update to version 3.3.2 and other changes

- Changes in version 3.3.2:
  https://cran.r-project.org/doc/manuals/r-release/NEWS.html

- Port Changes
    - Definitively set PORTNAME after removal of slave ports
    - Set MASTERS_SITES to CRAN
    - Make documentation installation simpler for users
        - make the DOCS option the only option for extra documentation
          (remove PDF option)
        - turn this option off by default since it pulls in over 1 GB of
          build dependencies (TeX and friends)
    - Do not make INFO option imply DOCS option
    - Cosmetic changes

Reviewed by:	mat
Approved by:	swills (mentor)
Differential Revision:	https://reviews.freebsd.org/D8330

 

19:28 riggs 

Modernize and simplify port

PR:		210866
Submitted by:	jrm@ftfl.ca (maintainer)
Reviewed by:	rhurlin@gwdg.de, bapt, riggs

 

08:29 wen 

- Update to 3.3.1
- Remove PCRE_PORT option
- Really strip the .so file
- Minor cleanup

PR:		210513
Submitted by:	wen@(myself)

 

19:10 pi 

math/R: Add optimization related options to Makefile

There are a couple of enhancements that can be made to math/R
regarding optimization: one would be to enable LTO and OpenMP
whenever the compiler supports it, another one would be to allow
linking to OpenBLAS besides ATLAS or R's internal BLAS implementation.
The patch was inspired by math/octave's handling of BLAS.

PR:		207425
Submitted by:	elferdo@gmail.com
Approved by:	bf (maintainer timeout)

 

18:07 pi 

math/R: 3.2.2 -> 3.3.0

Changes: https://stat.ethz.ch/pipermail/r-announce/2016/000602.html

PR:		209315
Submitted by:	wen
Approved by:	bf (maintainer, by mail)

 

08:21 wen 

- Update to 3.2.2

PR:		203418
Submitted by:	wen@(myself)
Reviewed by:	tota@
Approved by:	maintainer(timeout, > 25 days)
Thanks to:	freebsd-bugs@mackler.org harrison.grundy@astrodoggroup.com

 

23:24 antoine 

Cleanup plist

 

10:30 antoine 

Stage support

With hat:	portmgr

 

08:19 bf 

Update math/R to 3.0.2 patched r64207 and math/R-cran-SuppDists to 1.1-9.1;
adjust dependent ports

Reviewed by:	pfg, thierry, tota

 

15:15 bf 

Update math/R to 3.0.1-patched, and adjust dependent ports;
synchronize math/rpy with upstream repository

Reviewed by:	wen
Approved by:	wen, tota

 

04:21 bf 

update math/R to 2.15.3, and adjust dependent ports

 

17:51 bf 

update the R base ports to 2.15.2 and adjust dependent ports

Reviewed by:	thierry, tota, wen

 

23:57 bf 

update math/R to 2.15.1, switch to the new options format, and
adjust dependent ports

20:56 bf 

- update math/R-cran-psych to 1.2.1 [1]
- update math/R to 2.15.0, and adjust dependent ports
- minor changes to bsd.cran.mk [2]: rename MASTER_CRAN_SITES to
  MASTER_SITE_CRAN, as in bsd.sites.mk; make the install target more
  flexible and allow CRAN ports to override it; add a regression-test
  target; set USE_FORTRAN to match math/R; remove some of the
  redundant checks of USE_R_MOD; honor NOPORTDATA and NOPORTDOCS

Reviewed by:    thierry, tota, wen
Approved by:    D. Rue (maintainer) [1], wen [2]

16:59 bf 

update math/R to 2.14.2, and adjust dependent ports

07:02 bf 

update math/R to 2.14.0, math/R-cran-sp to 0.9-91, and adjust
dependent ports

Approved by:    linimon (portmgr), thierry, tota, wen
Feature safe:   yes

14:19 bf 

update math/R to 2.13.2, and adjust dependent ports

04:19 bf 

update R to 2.13.1 [1], and adjust dependent ports (this
includes workarounds intended to fix the broken sparc64
build, and fixes to the static libR, which is now in a
separate slave port, math/libR)

PR:             158947 [1]
Submitted by:   wen ([1], independently)

03:29 bf 

- update to 2.13.0
- switch to the bundled Rblas and Rlapack by default (this
  can be changed by setting BLAS and LAPACK) which favors
  correctness in some corner cases over a slight performance
  penalty; this will be revisited after the blas and lapack
  updates
- replace the STATIC_LIBR option with a LIBR option (on
  by default): if on, libR.a and libR.so are installed,
  and R is linked to libR.so. Otherwise, R is static, and
  no libRs are installed.
- remove the superfluous copy of libR.so in ${LOCALBASE}/lib [1]
- enable the cairo and pango elements in the X11() graphics
  device by default, controlled by new PANGOCAIRO option
- add a few small patches to dependent ports, bumping
  PORTREVISION where necessary

PR:             153309 [1]
Approved by:    thierry (rkward*), wen (rpy*, R-cran-*)

09:01 bf 

Clean up in preparation for update,
no functional change:
- indent more uniformly
- simplify slave port conditionals
- sort variables, pkg-plist

16:03 bf 

- Update R to 2.12.2, a bugfix release
- Bump PORTREVISION of dependent ports,
  where necessary

Approved by:    makc, miwi (mentors, implicit)

16:53 bf 

- Update R to 2.12.1
- Bump PORTREVISION of
  dependent ports

Approved by:    makc, miwi (mentors, implicit)
                pav (portmgr)
Feature safe:   yes

01:28 wen 

- Update to 2.11.0

PR:             ports/145993
Submitted by:   Wen Heping (myself)
Approved by:    maintainer

16:04 miwi 

- Make math/libRmath to a slave port of math/R
- Add an option to build libR into a static, rather than a shared library
(requested by a few users)

PR:             143076
Submitted by:   Pedro F. Giffuni <giffunip@tutopia.com>
                "b. f." <bf1783@googlemail.com> (maintainer)
Approved by:    maintainer

14:34 miwi 

- Update to 2.10.1

Submitted by:   "b. f." <bf1783@googlemail.com>
Thanks to:      wen@

09:16 miwi 

- Update to 2.9.2
- Fix build with custom PREFIX

PR:             based on 135927
Submitted by:   bf <bf1783@gmail.com> (maintainer)

21:07 miwi 

- Update to 2.9.0

PR:             135251
Submitted by:   bf <bf2006a@yahoo.com> (maintainer)

02:20 beech 

- Fix pkg-plist

PR:             ports/129063
Approved by:    maintainer timeout (2+ weeks)

08:01 rafan 

- Update to 2.7.2
- Reset maintainership per request by maintainer

PR:             ports/128520
Submitted by:   Pedro F. Giffuni <giffunip at tutopia.com>
Approved by:    Eric van Gyzen <eric at vangyzen.net> (maintainer)

14:13 gahr 

- Update to 2.7.1

PR:             125245
Submitted by:   Pedro F. Giffuni <pfgshield-freebsd@yahoo.com>
Approved by:    maintainer timeout (over three weeks)

01:57 rafan 

- Update to 2.6.1

PR:             ports/118358
Submitted by:   Vittorio De Martino <vdemart1 at tin.it>
Approved by:    Eric van Gyzen <eric+fbports at vangyzen.net> (maintainer)

13:11 rafan 

- Update to 2.6.0

PR:             ports/117142
Submitted by:   Vittorio De Martino <vdemart1@tin.it>
Approved by:    maintainer timeout (14 days)

12:38 rafan 

- Update to 2.5.1

PR:             ports/115826 (based on)
Submitted by:   vittorio de martino <vdemart1 at tin.it>
Approved by:    Eric van Gyzen <eric+fbports at vangyzen.net> (maintainer)

14:10 rafan 

- Update to 2.5.0

PR:             ports/112713 (based on)
Submitted by:   Vittorio De Martino <vdemart1 at tin.it>
Approved by:    Eric van Gyzen (maintainer)

17:56 rafan 

- Update to 2.4.1

PR:             ports/107638 (based on)
Submitted by:   Vittorio De Martino <vdemart1 at tin.it>
Approved by:    maintainer timeout (18 days)

01:27 rafan 

- Update to 2.4.0

PR:             ports/104261
Submitted by:   Vittorio De Martino <vdemart1 at tin.it>
Approved by:    Eric van Gyzen <eric+fbports at vangyzen.net> (maintainer)

16:03 rafan 

- Update to 2.3.1

PR:             ports/102432
Submitted by:   Vittorio De Martino <vdemart1 at tin.it>
Approved by:    Eric van Gyzen <eric+fbports at vangyzen.net> (maintainer)

12:08 pav 

- Update to 2.3.0

PR:             ports/96493
Submitted by:   Eric van Gyzen <eric+fbports@vangyzen.net> (maintainer)

14:19 vd 

Fix pkg-plist when some WITHOUT_* are defined

PR:             ports/94399
Submitted by:   Rong-En Fan <rafan@infor.org>
Approved by:    Eric van Gyzen <eric+fbports@vangyzen.net> (maintainer)

23:36 tdb 

- Update to 2.2.1
- Use DOCSDIR

PR:             91564
Submitted by:   Eric van Gyzen <eric+fbports@vangyzen.net> (maintainer)

07:31 sem 

- Update to 2.2.0

PR:             ports/87276
Submitted by:   maintainer

18:01 pav 

- Always use external gettext
- Bring in fresh makeinfo so HTML manual can be build [1]

Reported by:    krismail [1]

16:45 pav 

- Update to 82883

PR:             ports/82883
Submitted by:   Eric van Gyzen <vangyzen@stat.duke.edu> (maintainer)

04:16 pat 

Update to 2.1.0

PR:             ports/82174
Submitted by:   maintainer

11:01 krion 

Update to 2.0.1

PR:             ports/73975
Submitted by:   maintainer

21:02 pav 

- Update to 2.0.0

PR:             ports/72544
Submitted by:   Eric van Gyzen <vangyzen@stat.duke.edu> (maintainer)

16:14 pav 

- Update to 1.9.1

PR:             ports/68295
Submitted by:   Eric van Gyzen <vangyzen@stat.duke.edu> (maintainer)