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Port details on branch 2022Q3
jags Just Another Gibbs Sampler
4.3.1_3 math on this many watch lists=0 search for ports that depend on this port Find issues related to this port Report an issue related to this port View this port on Repology. pkg-fallout 4.3.1_3Version of this port present on the latest quarterly branch.
There is no maintainer for this port.
Any concerns regarding this port should be directed to the FreeBSD Ports mailing list via ports@FreeBSD.org search for ports maintained by this maintainer
Port Added: 2004-05-27 15:21:02
Last Update: 2024-02-24 19:25:23
Commit Hash: c5fef46
License: GPLv2
WWW:
http://mcmc-jags.sourceforge.net/
Description:
JAGS is Just Another Gibbs Sampler -- a program for analysis of Bayesian hierarchical models using Markov Chain Monte Carlo (MCMC) simulation. The functionality of JAGS is based on the BUGS program created by the MRC Biostatistics Unit (http://www.mrc-bsu.cam.ac.uk/). There is a short manual that describes the differences between JAGS and BUGS. Some of the BUGS examples have been modified to run with JAGS, and have been turned into a test suite.
Homepage    cgit ¦ Codeberg ¦ GitHub ¦ GitLab ¦ SVNWeb

Manual pages:
FreshPorts has no man page information for this port.
pkg-plist: as obtained via: make generate-plist
Expand this list (118 items)
Collapse this list.
  1. @ldconfig
  2. /usr/local/share/licenses/mcmc-jags-4.3.1_3/catalog.mk
  3. /usr/local/share/licenses/mcmc-jags-4.3.1_3/LICENSE
  4. /usr/local/share/licenses/mcmc-jags-4.3.1_3/GPLv2
  5. bin/mcmc-jags
  6. include/JAGS/Console.h
  7. include/JAGS/JRmath.h
  8. include/JAGS/compiler/Compiler.h
  9. include/JAGS/compiler/Counter.h
  10. include/JAGS/compiler/CounterTab.h
  11. include/JAGS/compiler/LogicalFactory.h
  12. include/JAGS/compiler/MixtureFactory.h
  13. include/JAGS/compiler/NodeFactory.h
  14. include/JAGS/compiler/ObsFuncTab.h
  15. include/JAGS/compiler/ParseTree.h
  16. include/JAGS/distribution/ArrayDist.h
  17. include/JAGS/distribution/DistError.h
  18. include/JAGS/distribution/DistPtr.h
  19. include/JAGS/distribution/DistTab.h
  20. include/JAGS/distribution/Distribution.h
  21. include/JAGS/distribution/RScalarDist.h
  22. include/JAGS/distribution/ScalarDist.h
  23. include/JAGS/distribution/VectorDist.h
  24. include/JAGS/function/ArrayFunction.h
  25. include/JAGS/function/ArrayLogDensity.h
  26. include/JAGS/function/DFunction.h
  27. include/JAGS/function/DPQFunction.h
  28. include/JAGS/function/FuncError.h
  29. include/JAGS/function/FuncTab.h
  30. include/JAGS/function/Function.h
  31. include/JAGS/function/FunctionPtr.h
  32. include/JAGS/function/LinkFunction.h
  33. include/JAGS/function/PFunction.h
  34. include/JAGS/function/QFunction.h
  35. include/JAGS/function/ScalarFunction.h
  36. include/JAGS/function/ScalarLogDensity.h
  37. include/JAGS/function/ScalarVectorFunction.h
  38. include/JAGS/function/VectorFunction.h
  39. include/JAGS/function/VectorLogDensity.h
  40. include/JAGS/graph/AggNode.h
  41. include/JAGS/graph/ArrayLogicalNode.h
  42. include/JAGS/graph/ArrayStochasticNode.h
  43. include/JAGS/graph/ConstantNode.h
  44. include/JAGS/graph/DeterministicNode.h
  45. include/JAGS/graph/Graph.h
  46. include/JAGS/graph/GraphMarks.h
  47. include/JAGS/graph/LinkNode.h
  48. include/JAGS/graph/LogicalNode.h
  49. include/JAGS/graph/MixTab.h
  50. include/JAGS/graph/MixtureNode.h
  51. include/JAGS/graph/Node.h
  52. include/JAGS/graph/NodeError.h
  53. include/JAGS/graph/ParentError.h
  54. include/JAGS/graph/ScalarLogicalNode.h
  55. include/JAGS/graph/ScalarStochasticNode.h
  56. include/JAGS/graph/StochasticNode.h
  57. include/JAGS/graph/VSLogicalNode.h
  58. include/JAGS/graph/VectorLogicalNode.h
  59. include/JAGS/graph/VectorStochasticNode.h
  60. include/JAGS/model/BUGSModel.h
  61. include/JAGS/model/Model.h
  62. include/JAGS/model/Monitor.h
  63. include/JAGS/model/MonitorControl.h
  64. include/JAGS/model/MonitorFactory.h
  65. include/JAGS/model/MonitorInfo.h
  66. include/JAGS/model/NodeArray.h
  67. include/JAGS/model/NodeArraySubset.h
  68. include/JAGS/model/SymTab.h
  69. include/JAGS/module/Module.h
  70. include/JAGS/module/ModuleError.h
  71. include/JAGS/rng/RNG.h
  72. include/JAGS/rng/RNGFactory.h
  73. include/JAGS/rng/RmathRNG.h
  74. include/JAGS/rng/TruncatedNormal.h
  75. include/JAGS/sampler/GraphView.h
  76. include/JAGS/sampler/ImmutableSampleMethod.h
  77. include/JAGS/sampler/ImmutableSampler.h
  78. include/JAGS/sampler/Linear.h
  79. include/JAGS/sampler/Metropolis.h
  80. include/JAGS/sampler/MutableSampleMethod.h
  81. include/JAGS/sampler/MutableSampler.h
  82. include/JAGS/sampler/RWMetropolis.h
  83. include/JAGS/sampler/SampleMethodNoAdapt.h
  84. include/JAGS/sampler/Sampler.h
  85. include/JAGS/sampler/SamplerFactory.h
  86. include/JAGS/sampler/SingletonFactory.h
  87. include/JAGS/sampler/SingletonGraphView.h
  88. include/JAGS/sampler/Slicer.h
  89. include/JAGS/sampler/StepAdapter.h
  90. include/JAGS/sampler/TemperedMetropolis.h
  91. include/JAGS/sarray/Range.h
  92. include/JAGS/sarray/RangeIterator.h
  93. include/JAGS/sarray/SArray.h
  94. include/JAGS/sarray/SimpleRange.h
  95. include/JAGS/util/dim.h
  96. include/JAGS/util/integer.h
  97. include/JAGS/util/logical.h
  98. include/JAGS/util/nainf.h
  99. include/JAGS/version.h
  100. lib/JAGS/modules-4/basemod.so
  101. lib/JAGS/modules-4/bugs.so
  102. lib/JAGS/modules-4/dic.so
  103. lib/JAGS/modules-4/glm.so
  104. lib/JAGS/modules-4/lecuyer.so
  105. lib/JAGS/modules-4/mix.so
  106. lib/JAGS/modules-4/msm.so
  107. lib/libjags.so
  108. lib/libjags.so.4
  109. lib/libjags.so.4.0.3
  110. lib/libjrmath.so
  111. lib/libjrmath.so.0
  112. lib/libjrmath.so.0.0.0
  113. libdata/pkgconfig/jags.pc
  114. libexec/jags-terminal
  115. share/man/man1/jags.1.gz
  116. @owner
  117. @group
  118. @mode
Collapse this list.
Dependency lines:
  • mcmc-jags>0:math/jags
To install the port:
cd /usr/ports/math/jags/ && make install clean
To add the package, run one of these commands:
  • pkg install math/jags
  • pkg install mcmc-jags
NOTE: If this package has multiple flavors (see below), then use one of them instead of the name specified above.
PKGNAME: mcmc-jags
Flavors: there is no flavor information for this port.
distinfo:
TIMESTAMP = 1650043347 SHA256 (mcmc-jags/JAGS-4.3.1.tar.gz) = f9258355b5e9eb13bd33c5fa720f0cbebacea7d0a4a42b71b0fb14501ee14229 SIZE (mcmc-jags/JAGS-4.3.1.tar.gz) = 2019687

Expand this list (8 items)

Collapse this list.

SHA256 (mcmc-jags/jags_developer_manual.pdf) = 6e7c707b94ffc931807198cc162e8b254859bb774695ae39ef1c1c175560259b SIZE (mcmc-jags/jags_developer_manual.pdf) = 71319 SHA256 (mcmc-jags/jags_installation_manual.pdf) = d55bbf390d7fb1059ec7b89cb5c01bce91a1aea56e8f25ad905414a8f77a0eea SIZE (mcmc-jags/jags_installation_manual.pdf) = 210134 SHA256 (mcmc-jags/jags_user_manual.pdf) = d73a023dc87654e6ae56eb27cc6dba25097e00ddd2d8f7ca2639f27d55e581a3 SIZE (mcmc-jags/jags_user_manual.pdf) = 429729 SHA256 (mcmc-jags/classic-bugs.tar.gz) = cbecdd184516ed1e0ed26993335c7ce6b50b85875c66a059a4ad51780547e580 SIZE (mcmc-jags/classic-bugs.tar.gz) = 86183

Collapse this list.

Packages (timestamps in pop-ups are UTC):
mcmc-jags
ABIaarch64amd64armv6armv7i386powerpcpowerpc64powerpc64le
FreeBSD:13:latest4.3.1_34.3.1_34.3.0_74.3.1_34.3.1_3-4.3.0_7-
FreeBSD:13:quarterly4.3.1_34.3.1_3-4.3.1_34.3.1_3-4.3.1_2-
FreeBSD:14:latest4.3.1_34.3.1_3-4.3.1_34.3.1_3---
FreeBSD:14:quarterly4.3.1_24.3.1_3-4.3.1_24.3.1_3-4.3.1_2-
FreeBSD:15:latest4.3.1_34.3.1_3n/a4.3.1_2n/a-4.3.1_24.3.1_2
FreeBSD:15:quarterly--n/a-n/a---
Dependencies
NOTE: FreshPorts displays only information on required and default dependencies. Optional dependencies are not covered.
Build dependencies:
  1. bison : devel/bison
  2. gfortran13 : lang/gcc13
  3. gmake>=4.3 : devel/gmake
  4. gcc13 : lang/gcc13
  5. as : devel/binutils
Runtime dependencies:
  1. gfortran13 : lang/gcc13
  2. gcc13 : lang/gcc13
Library dependencies:
  1. libltdl.so : devel/libltdl
  2. libopenblas.so : math/openblas
There are no ports dependent upon this port
Configuration Options:
===> The following configuration options are available for mcmc-jags-4.3.1_3: DOCS=on: Build and/or install documentation EXAMPLES=on: Build and/or install examples ====> Options available for the single BLAS: you have to select exactly one of them ATLAS=off: ATLAS BLAS implementation OPENBLAS=on: OpenBLAS BLAS implementation NETLIB=off: BLAS implementation from Netlib ===> Use 'make config' to modify these settings
Options name:
math_jags
USES:
bison compiler:features fortran gmake libtool localbase pathfix blaslapack:openblas
pkg-message:
For install:
Please note that the name of the jags script has been changed from "jags" to "mcmc-jags" on this platform, to avoid a conflict with net/jags, and usage should be adjusted accordingly.
Master Sites:
  1. There is no master site for this port.

There are no commits on branch 2022Q3 for this port
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