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Why was the website so slow for so long?

The cause of the slowdown was a change to the ZFS dataset. In conjunction with the database server, very little caching was being done. This combination resulted in increased disk I/O as the system churned through the database. Details in the blog post which outlines the various things which changed. Many graphs.

Sanity Test Failure
Sat, 18 Jun 2016
[ 17:46 dbn ] Original commit   Revision:417077
R 3.3.0 math files touched by this commit Language for statistical computing and graphics
R-cran-MCMCpack 1.3.3_5 math files touched by this commit Markov chain Monte Carlo Package
R-cran-RcppArmadillo 0.7.100.3.1 math files touched by this commit Rcpp integration for Armadillo templated linear algebra library
Mk/Uses/cran: add "compiles" argument.

[1] Add "compiles" argument to cran to allow R-cran ports need to compile
code to bring in the correct compiler dependencies.  Also, ensure
consistency between the compiler selected by the R port and the R-cran ports.

[2] Migrate R-cran ports that manually specify the compiler to
USES=cran,compiles.

PR:		210343
Approved by:	wen (1), portmgr (2, blanket)

Sanity Test Results

math/libRmath:

This command (FreshPorts code 1):

/usr/local/bin/sudo /usr/sbin/chroot -u dan /usr/FreshPorts/ports-jail
/make-port.sh /usr/local/PORTS-head math/libRmath
2>/tmp/FreshPorts.math.libRmath.make-error.2016.6.18.17.47.9.58086

produced this error:

Error message is: make: "/usr/local/PORTS-head/math/libRmath/../R/Makefile"
line 111: Cannot open /usr/local/PORTS-head/math/libRmath/compiler.mk
make: Fatal errors encountered -- cannot continueMake results are : 
make: stopped in /usr/local/PORTS-head/math/libRmath

math/libR:

This command (FreshPorts code 1):

/usr/local/bin/sudo /usr/sbin/chroot -u dan /usr/FreshPorts/ports-jail
/make-port.sh /usr/local/PORTS-head math/libR
2>/tmp/FreshPorts.math.libR.make-error.2016.6.18.17.47.10.58086

produced this error:

Error message is: make: "/usr/local/PORTS-head/math/libR/../R/Makefile"
line 111: Cannot open /usr/local/PORTS-head/math/libR/compiler.mk
make: Fatal errors encountered -- cannot continueMake results are : 
make: stopped in /usr/local/PORTS-head/math/libR

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