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non port: science/R-cran-Epi/Makefile

Number of commits found: 57

Wednesday, 3 Apr 2024
22:07 TAKATSU Tomonari (tota) search for other commits by this committer
science/R-cran-Epi: Update to 2.48

Reported by:	portscout
commit hash: a95e6a54ecd5b81590c78dfb8ba73d68f7810e97 commit hash: a95e6a54ecd5b81590c78dfb8ba73d68f7810e97 commit hash: a95e6a54ecd5b81590c78dfb8ba73d68f7810e97 commit hash: a95e6a54ecd5b81590c78dfb8ba73d68f7810e97 a95e6a5
Friday, 12 May 2023
11:32 TAKATSU Tomonari (tota) search for other commits by this committer
science/R-cran-Epi: Update to 2.47.1
commit hash: 870a2a57832578bc88b39073e95172117ad01e16 commit hash: 870a2a57832578bc88b39073e95172117ad01e16 commit hash: 870a2a57832578bc88b39073e95172117ad01e16 commit hash: 870a2a57832578bc88b39073e95172117ad01e16 870a2a5
Sunday, 23 Apr 2023
09:09 Gerald Pfeifer (gerald) search for other commits by this committer
*: Bump PORTREVISIONs for math/mpc update to 1.3.1
commit hash: 8d3e020ed032a8db00208994d0db646de7dc6f5b commit hash: 8d3e020ed032a8db00208994d0db646de7dc6f5b commit hash: 8d3e020ed032a8db00208994d0db646de7dc6f5b commit hash: 8d3e020ed032a8db00208994d0db646de7dc6f5b 8d3e020
Wednesday, 7 Sep 2022
21:10 Stefan E├čer (se) search for other commits by this committer
Add WWW entries to port Makefiles

It has been common practice to have one or more URLs at the end of the
ports' pkg-descr files, one per line and prefixed with "WWW:". These
URLs should point at a project website or other relevant resources.

Access to these URLs required processing of the pkg-descr files, and
they have often become stale over time. If more than one such URL was
present in a pkg-descr file, only the first one was tarnsfered into
the port INDEX, but for many ports only the last line did contain the
port specific URL to further information.

There have been several proposals to make a project URL available as
a macro in the ports' Makefiles, over time.

This commit implements such a proposal and moves one of the WWW: entries
of each pkg-descr file into the respective port's Makefile. A heuristic
attempts to identify the most relevant URL in case there is more than
one WWW: entry in some pkg-descr file. URLs that are not moved into the
Makefile are prefixed with "See also:" instead of "WWW:" in the pkg-descr
files in order to preserve them.

There are 1256 ports that had no WWW: entries in pkg-descr files. These
ports will not be touched in this commit.

The portlint port has been adjusted to expect a WWW entry in each port
Makefile, and to flag any remaining "WWW:" lines in pkg-descr files as
deprecated.

Approved by:		portmgr (tcberner)
commit hash: b7f05445c00f2625aa19b4154ebcbce5ed2daa52 commit hash: b7f05445c00f2625aa19b4154ebcbce5ed2daa52 commit hash: b7f05445c00f2625aa19b4154ebcbce5ed2daa52 commit hash: b7f05445c00f2625aa19b4154ebcbce5ed2daa52 b7f0544
Wednesday, 20 Jul 2022
14:22 Tobias C. Berner (tcberner) search for other commits by this committer
science: remove 'Created by' lines

A big Thank You to the original contributors of these ports:

  *  Andreas Fehlner <fehlner@gmx.de>
  *  Brad Huntting <huntting@glarp.com>
  *  Chao Shin <quakelee@cn.FreeBSD.org>
  *  Cheng-Lung Sung <clsung@FreeBSD.org>
  *  Chia-Hsing Yu <me@davidyu.org>
  *  Chris Rees <utisoft@gmail.com>
  *  David Naylor <dbn@FreeBSD.org>
  *  Dmitry Sivachenko <demon@FreeBSD.org>
  *  Ed Schouten <ed@FreeBSD.org>
  *  Eric Freeman <freebsdports@chillibear.com>
  *  Erik B Knudsen
  *  Fernan Aguero <fernan@iib.unsam.edu.ar>
  *  Frederic Culot <frederic@culot.org>
  *  Gea-Suan Lin <gslin@gslin.org>
  *  Glenn Johnson
  *  Greg Lewis <glewis@FreeBSD.org>
  *  Igor Serikov <iserikov@acm.org>
  *  Johannes Dieterich <dieterich@ogolem.org>
  *  Johannes Dieterich <jmd@FreeBSD.org>
  *  Johannes M Dieterich <jmd@FreeBSD.org>
  *  Johannes Meixner <johannes@perceivon.net>
  *  Ju Pengfei <jupengfei@gmail.com>
  *  Kay Lehmann <kay_lehmann@web.de>
  *  Klaus Aehlig <aehlig@linta.de>
  *  Kurt Kanzenbach <kurt@kmk-computers.de>
  *  Leland Wang <llwang@infor.org>
  *  Li-Lun Wang <llwang@infor.org>
  *  Markus Brueffer <markus@FreeBSD.org>
  *  NAKATA Maho <maho@FreeBSD.org>
  *  NAKATA, Maho <maho@FreeBSD.org>
  *  Nakata Maho <chat95@mbox.kyoto-inet.or.jp>
  *  Nakata Maho <maho@FreeBSD.org>
  *  Pav Lucistnik <pav@FreeBSD.org>
  *  Pav Lucistnik <pav@oook.cz>
  *  Pedro F. Giffuni
  *  Pedro F. Giffuni <giffunip@tutopia.com>
  *  Pedro Giffuni
  *  Pedro Giffuni <giffunip@asme.org>
  *  Po-Chuan Hsieh <sunpoet@FreeBSD.org>
  *  Rong-En Fan <rafan@FreeBSD.org>
  *  Ryo MIYAMOTO <rmiya@cc.hirosaki-u.ac.jp>
  *  Seamus Venasse <svenasse@polaris.ca>
  *  Shin'ya Murakami <murakami@ahs.scitec.kobe-u.ac.jp>
  *  Shin-ya MURAKAMI <murashin@gfd-dennou.org>
  *  Shin-ya Murakami <murashin@gfd-dennou.org>
  *  Stas Timokhin <devel@stasyan.com>
  *  Stephen Montgomery-Smith <stephen@math.missouri.edu>
  *  Steve Wills <steve@mouf.net
  *  Steve Wills <steve@mouf.net>
  *  Sunpoet Po-Chuan Hsieh <sunpoet@FreeBSD.org>
  *  Sunpoet Po-Chuan Hsieh <sunpoet@sunpoet.net>
  *  TAKATSU Tomonari <tota@FreeBSD.org>
  *  TAOKA Fumiyoshi
  *  Thierry Thomas <thierry@pompo.net>
  *  Tim Cas <ports@stdrand.com>
  *  Uffe Jakobsen <uffe@uffe.org>
  *  Veniamin Gvozdikov <vg@FreeBSD.org>
  *  Vsevolod Stakhov <vsevolod@highsecure.ru>
  *  Wen Heping <wen@FreeBSD.org>
  *  Wen Heping <wenheping@gmail.com>
  *  Wen heping <wenheping@gmail.com>
  *  Ying-Chieh Liao <ijliao@FreeBSD.org>
  *  Yuri Victorovich <yuri@rawbw.com>
  *  anholt@FreeBSD.org
  *  bacon@smithers.neuro.mcw.edu
  *  batman <batman@udel.edu>
  *  db
  *  gurkan@phys.ethz.ch
  *  ijliao
  *  jbacon
  *  maintainer.freebsd@xpoundit.com
  *  mi
  *  rafan@infor.org
  *  shurd@FreeBSD.org
  *  thierry@pompo.net
  *  will

With hat:	portmgr
commit hash: 46196047a4df0f85aaee442799209fdaacf03361 commit hash: 46196047a4df0f85aaee442799209fdaacf03361 commit hash: 46196047a4df0f85aaee442799209fdaacf03361 commit hash: 46196047a4df0f85aaee442799209fdaacf03361 4619604
Tuesday, 12 Jul 2022
02:10 TAKATSU Tomonari (tota) search for other commits by this committer
science/R-cran-Epi: Update to 2.47
commit hash: 4aac06db33b09f4f375cacb0704f680363397c20 commit hash: 4aac06db33b09f4f375cacb0704f680363397c20 commit hash: 4aac06db33b09f4f375cacb0704f680363397c20 commit hash: 4aac06db33b09f4f375cacb0704f680363397c20 4aac06d
Sunday, 17 Apr 2022
06:22 TAKATSU Tomonari (tota) search for other commits by this committer
science/R-cran-Epi: Update to 2.46
commit hash: 308aa02b1506de4fd7e56b91d6cdfeb1bae5e35b commit hash: 308aa02b1506de4fd7e56b91d6cdfeb1bae5e35b commit hash: 308aa02b1506de4fd7e56b91d6cdfeb1bae5e35b commit hash: 308aa02b1506de4fd7e56b91d6cdfeb1bae5e35b 308aa02
Tuesday, 6 Apr 2021
14:31 Mathieu Arnold (mat) search for other commits by this committer
Remove # $FreeBSD$ from Makefiles.
commit hash: 305f148f482daf30dcf728039d03d019f88344eb commit hash: 305f148f482daf30dcf728039d03d019f88344eb commit hash: 305f148f482daf30dcf728039d03d019f88344eb commit hash: 305f148f482daf30dcf728039d03d019f88344eb 305f148
Monday, 1 Mar 2021
09:47 tota search for other commits by this committer
- Update to 2.44
Original commitRevision:566846 
Saturday, 30 Jan 2021
04:53 tota search for other commits by this committer
- Update to 2.43
Original commitRevision:563275 
Tuesday, 10 Nov 2020
11:37 tota search for other commits by this committer
- Update to 2.42
Original commitRevision:554830 
Monday, 10 Aug 2020
08:08 tota search for other commits by this committer
- Update to 2.41
Original commitRevision:544603 
Tuesday, 5 May 2020
16:07 jrm search for other commits by this committer
math/R: Update to version 4.0.0

Upstream changes:
https://stat.ethz.ch/pipermail/r-announce/2020/000653.html

Also bump PORTREVISION of ports that depend on math/R.

Submitted by:	wen (in part)
Reviewed by:	jwb, Rainer Hurling <rhurlin@gwdg.de>, thierry
Differential Revision:	https://reviews.freebsd.org/D24572
Original commitRevision:534095 
Thursday, 28 Nov 2019
00:12 tota search for other commits by this committer
- Update to 2.40
Original commitRevision:518551 
Thursday, 26 Sep 2019
10:50 tota search for other commits by this committer
- Update to 2.38
Original commitRevision:512889 
Friday, 26 Jul 2019
20:46 gerald search for other commits by this committer
Bump PORTREVISION for ports depending on the canonical version of GCC
as defined in Mk/bsd.default-versions.mk which has moved from GCC 8.3
to GCC 9.1 under most circumstances now after revision 507371.

This includes ports
 - with USE_GCC=yes or USE_GCC=any,
 - with USES=fortran,
 - using Mk/bsd.octave.mk which in turn features USES=fortran, and
 - with USES=compiler specifying openmp, nestedfct, c11, c++0x, c++11-lang,
   c++11-lib, c++14-lang, c++17-lang, or gcc-c++11-lib
plus, everything INDEX-11 shows with a dependency on lang/gcc9 now.

PR:		238330
Original commitRevision:507372 
Sunday, 7 Jul 2019
12:34 tota search for other commits by this committer
- Update to 2.37
Original commitRevision:506137 
Wednesday, 12 Dec 2018
01:35 gerald search for other commits by this committer
Bump PORTREVISION for ports depending on the canonical version of GCC
defined via Mk/bsd.default-versions.mk which has moved from GCC 7.4 t
GCC 8.2 under most circumstances.

This includes ports
 - with USE_GCC=yes or USE_GCC=any,
 - with USES=fortran,
 - using Mk/bsd.octave.mk which in turn features USES=fortran, and
 - with USES=compiler specifying openmp, nestedfct, c11, c++0x, c++11-lang,
   c++11-lib, c++14-lang, c++17-lang, or gcc-c++11-lib
plus, as a double check, everything INDEX-11 showed depending on lang/gcc7.

PR:		231590
Original commitRevision:487272 
Monday, 27 Aug 2018
02:22 tota search for other commits by this committer
- Update to 2.32
Original commitRevision:478171 
Thursday, 17 May 2018
06:30 tota search for other commits by this committer
- Update to 2.30
Original commitRevision:470198 
Thursday, 26 Apr 2018
09:32 tota search for other commits by this committer
- Update to 2.28
Original commitRevision:468337 
Monday, 2 Apr 2018
09:54 tota search for other commits by this committer
- Update to 2.26
Original commitRevision:466216 
Saturday, 10 Mar 2018
17:46 gerald search for other commits by this committer
Bump PORTREVISIONs of all users of math/mpc that we just updated to
version 1.1.0 (via revision 464079).
Original commitRevision:464084 
Monday, 28 Aug 2017
11:50 tota search for other commits by this committer
- Update to 2.19
Original commitRevision:448860 
Thursday, 6 Jul 2017
03:09 tota search for other commits by this committer
- Add missing dependency

Reported by:	pkg-fallout
Original commitRevision:445126 
Monday, 3 Jul 2017
06:01 tota search for other commits by this committer
- Update to 2.16
Original commitRevision:444914 
Tuesday, 6 Jun 2017
08:12 tota search for other commits by this committer
- Update to 2.15
Original commitRevision:442746 
Sunday, 7 May 2017
07:39 tota search for other commits by this committer
- Update to 2.12
Original commitRevision:440312 
Saturday, 15 Oct 2016
04:49 tota search for other commits by this committer
- Update to 2.7
Original commitRevision:424000 
Friday, 1 Apr 2016
14:25 mat search for other commits by this committer
Remove ${PORTSDIR}/ from dependencies, categories r, s, t, and u.

With hat:	portmgr
Sponsored by:	Absolight
Original commitRevision:412349 
Tuesday, 26 Jan 2016
01:48 tota search for other commits by this committer
- Update to 2.0
Original commitRevision:407253 
Sunday, 8 Nov 2015
06:46 tota search for other commits by this committer
- Update to 1.1.71
- Update WWW in pkg-descr
Original commitRevision:401035 
Saturday, 13 Jun 2015
06:04 tota search for other commits by this committer
- Update to 1.1.67
Original commitRevision:389321 
Wednesday, 10 Sep 2014
20:50 gerald search for other commits by this committer
Update the default version of GCC in the Ports Collection from GCC 4.7.4
to GCC 4.8.3.

Part II, Bump PORTREVISIONs.

PR:		192025
Tested by:	antoine (-exp runs)
Approved by:	portmgr (implicit)
Original commitRevision:367888 
Monday, 10 Mar 2014
20:55 gerald search for other commits by this committer
Update the default version of GCC used in the Ports Collection from
GCC 4.6.4 to GCC 4.7.3.  This entails updating the lang/gcc port as
well as changing the default in Mk/bsd.default-versions.mk.

Part II, Bump PORTREVISIONs.

PR:		182136
Supported by:	Christoph Moench-Tegeder <cmt@burggraben.net> (fixing many ports)
Tested by:	bdrewery (two -exp runs)
Original commitRevision:347809 
Saturday, 28 Dec 2013
10:28 dbn search for other commits by this committer
Convert Mk/bsd.cran.mk to the Uses framework.

PR:		ports/184699
Reviewed by:	bapt
Approved by:	portmgr (bdrewery), wen (maintainer, timeout > 2 weeks)
Original commitRevision:337846 
Wednesday, 27 Nov 2013
18:56 dbn search for other commits by this committer
Add stage support to Mk/bsd.cran.mk and all USE_R_MOD ports (aka R-cran-*).

Since this patch converts all affected ports, bsd.cran.mk no longer supports
NO_STAGE and errors out if NO_STAGE is set.

Exp-run:	ports/184216
Reviewed by:	bdrewery
Approved by:	portsmgr, wen
Original commitRevision:335044 
Wednesday, 13 Nov 2013
08:19 bf search for other commits by this committer
Update math/R to 3.0.2 patched r64207 and math/R-cran-SuppDists to 1.1-9.1;
adjust dependent ports

Reviewed by:	pfg, thierry, tota
Original commitRevision:333659 
Saturday, 26 Oct 2013
00:52 gerald search for other commits by this committer
Update to libmpc version 1.0.1 which brings the following fixes:

 - Switched to automake 1.11.6, see CVE-2012-3386.
 - #14669: Fixed extraction of CC from gmp.h.
 - Fixed case of intermediate zero real or imaginary part in mpc_fma,
   found by hydra with GMP_CHECK_RANDOMIZE=1346362345.

This is on top of the following changes from version 1.0

 - Licence change towards LGPLv3+ for the code and GFDLv1.3+ (with no
   invariant sections) for the documentation.
 - 100% of all lines are covered by tests
 - Renamed functions
   . mpc_mul_2exp to mpc_mul_2ui
   . mpc_div_2exp to mpc_div_2ui
 - 0^0, which returned (NaN,NaN) previously, now returns (1,+0).
 - Removed compatibility with K&R compilers, which was untestable due
   to lack of such compilers.
 - New functions
   . mpc_log10
   . mpc_mul_2si, mpc_div_2si
 - Speed-ups
   . mpc_fma
 - Bug fixes
   . mpc_div and mpc_norm now return a value indicating the effective
     rounding direction, as the other functions.
   . mpc_mul, mpc_sqr and mpc_norm now return correct results even if
     there are over- or underflows during the computation.
   . mpc_asin, mpc_proj, mpc_sqr: Wrong result when input variable has
     infinite part and equals output variable is corrected.
   . mpc_fr_sub: Wrong return value for imaginary part is corrected.

Convert to the new LIB_DEPENDS standard and remove hard-coded
.so versions from a couple of dependent ports.

Bump PORTREVISIONS of all dependent ports.

PR:		183141
Approved by:	portmgr (bdrewery)
Original commitRevision:331644 
Friday, 20 Sep 2013
22:48 bapt search for other commits by this committer
Add NO_STAGE all over the place in preparation for the staging support (cat:
science)
Original commitRevision:327767 
Tuesday, 28 May 2013
15:15 bf search for other commits by this committer
Update math/R to 3.0.1-patched, and adjust dependent ports;
synchronize math/rpy with upstream repository

Reviewed by:	wen
Approved by:	wen, tota
Original commitRevision:319316 
Saturday, 18 May 2013
22:32 tota search for other commits by this committer
- Update to 1.1.49
Original commitRevision:318460 
Thursday, 7 Mar 2013
04:21 bf search for other commits by this committer
update math/R to 2.15.3, and adjust dependent ports
Original commitRevision:313562 
Saturday, 9 Feb 2013
01:30 tota search for other commits by this committer
- Update to 1.1.44
- Remove indefinite article from COMMENT
Original commitRevision:311958 
Friday, 4 Jan 2013
17:51 bf search for other commits by this committer
update the R base ports to 2.15.2 and adjust dependent ports

Reviewed by:	thierry, tota, wen
Original commitRevision:309935 
Tuesday, 6 Nov 2012
22:51 tota search for other commits by this committer
- Update to 1.1.40
- Convert to new Makefile header
- Trim WWW: line in pkg-descr

Feature safe:	yes
Original commitRevision:307105 
Saturday, 30 Jun 2012
03:31 tota search for other commits by this committer
- Update to 1.1.36
Original commit
Tuesday, 26 Jun 2012
23:57 bf search for other commits by this committer
update math/R to 2.15.1, switch to the new options format, and
adjust dependent ports
Original commit
Friday, 4 May 2012
20:56 bf search for other commits by this committer
- update math/R-cran-psych to 1.2.1 [1]
- update math/R to 2.15.0, and adjust dependent ports
- minor changes to bsd.cran.mk [2]: rename MASTER_CRAN_SITES to
  MASTER_SITE_CRAN, as in bsd.sites.mk; make the install target more
  flexible and allow CRAN ports to override it; add a regression-test
  target; set USE_FORTRAN to match math/R; remove some of the
  redundant checks of USE_R_MOD; honor NOPORTDATA and NOPORTDOCS

Reviewed by:    thierry, tota, wen
Approved by:    D. Rue (maintainer) [1], wen [2]
Original commit
Saturday, 31 Mar 2012
05:51 tota search for other commits by this committer
- Update to 1.1.34

Feature safe:   yes
Original commit
Saturday, 3 Mar 2012
16:59 bf search for other commits by this committer
update math/R to 2.14.2, and adjust dependent ports
Original commit
Thursday, 26 Jan 2012
11:34 tota search for other commits by this committer
- Update to 1.1.33
- Add LICENSE
Original commit
Wednesday, 18 Jan 2012
23:04 bf search for other commits by this committer
update math/R to 2.14.1, and adjust dependent ports
Original commit
Sunday, 27 Nov 2011
07:02 bf search for other commits by this committer
update math/R to 2.14.0, math/R-cran-sp to 0.9-91, and adjust
dependent ports

Approved by:    linimon (portmgr), thierry, tota, wen
Feature safe:   yes
Original commit
Tuesday, 15 Nov 2011
20:09 tota search for other commits by this committer
- Move PKGNAMEPREFIX defined in each R-cran- related ports Makefile
  to Mk/bsd.cran.mk

PR:             ports/162238
Submitted by:   tota (myself)
Approved by:    wen (maintainer of Mk/bsd.cran.mk and many related ports),
                David Naylor <naylor_DOT_b_DOT_david_AT_gmail_DOT_com>
                  (maintainer of math/R-cran-RSvgDevice and math/R-cran-car),
                Dan Rue <drue_AT_therub_DOT_org>
                  (maintainer of math/R-cran-psych, timeout > 2 weeks)
Feature safe:   yes
Original commit
Tuesday, 11 Oct 2011
14:19 bf search for other commits by this committer
update math/R to 2.13.2, and adjust dependent ports
Original commit
Saturday, 17 Sep 2011
06:55 tota search for other commits by this committer
- Add a new port: science/R-cran-Epi

  Functions for demographic and epidemiological analysis in the Lexis
  diagram, i.e. register and cohort follow-up data, including interval
  censored data and representation of multistate data. Also some
  useful functions for tabulation and plotting. Contains some
  epidemiological datasets.

  WWW:  http://www.pubhealth.ku.dk/~bxc/Epi/
Original commit

Number of commits found: 57