| Port details |
- avogadrolibs Avogadro2 libraries for chemical editor and visualization applications
- 1.95.1_1 science
 =0      1.95.1Version of this port present on the latest quarterly branch. - Maintainer: yuri@FreeBSD.org
- Port Added: 2018-10-17 01:02:48
- Last Update: 2022-06-16 15:13:01
- Commit Hash: 328ae40
- License: GPLv2
- Description:
- Libraries that are a foundation of the Avogadro 2 project.
Avogadro 2 is a chemical editor and visualization application, it is also a set
of reusable software libraries written in C++ using principles of modularity for
maximum reuse. The development of the first generation Avogadro application and
library is documented in our paper, and this remains the preferred method of
citation at present. The motivation for rewriting Avogadro, along with
improvements and changes made in Avogadro 2 are summarized in our Source
article. We provide a set of permissively licensed, open source, cross platform
software components in the Avogadro 2 libraries, along with an end-user
application with full source code, and binaries.
The library features updated and improved rendering, where we built upon the
abstraction provided by previous API, but implemented a simple scene graph. This
makes use of features such as impostor sphere rendering, resulting in
significant rendering speed improvements while improving the quality of the
visualization. The core is built for scalability, looking to enable the analysis
of larger chemical structures and simulations being produced by computational
chemistry codes today. Emphasis has also been placed on making it even easier to
extend, using simple Python scripts to add simulation input capabilities, and
data input/output along with access to full-blown C++ plugin APIs where more
control is required.
WWW: https://www.openchemistry.org/projects/avogadro2/
- SVNWeb : git : Homepage
- pkg-plist: as obtained via:
make generate-plist - Dependency lines:
-
- For RUN/BUILD depends:
- avogadrolibs>0:science/avogadrolibs
- For LIB depends:
- libAvogadroCore.so:science/avogadrolibs
- libAvogadroIO.so:science/avogadrolibs
- libAvogadroMoleQueue.so:science/avogadrolibs
- libAvogadroQtGui.so:science/avogadrolibs
- libAvogadroQtOpenGL.so:science/avogadrolibs
- libAvogadroQtPlugins.so:science/avogadrolibs
- libAvogadroQuantumIO.so:science/avogadrolibs
- libAvogadroRendering.so:science/avogadrolibs
- To install the port:
- cd /usr/ports/science/avogadrolibs/ && make install clean
- To add the package, run one of these commands:
- pkg install science/avogadrolibs
- pkg install avogadrolibs
NOTE: If this package has multiple flavors (see below), then use one of them instead of the name specified above.- PKGNAME: avogadrolibs
- Flavors: there is no flavor information for this port.
- distinfo:
- TIMESTAMP = 1644049029
SHA256 (OpenChemistry-avogadrolibs-1.95.1_GH0.tar.gz) = 52817eebfc0cf700e5f6c0c4455b460618ec0dd7cb4ede5d8fabc5a2d73a7816
SIZE (OpenChemistry-avogadrolibs-1.95.1_GH0.tar.gz) = 11015910
- Packages (timestamps in pop-ups are UTC):
- Dependencies
- NOTE: FreshPorts displays only information on required and default dependencies. Optional dependencies are not covered.
- Build dependencies:
-
- mmtf-cpp>0 : science/mmtf-cpp
- cmake : devel/cmake
- ninja : devel/ninja
- eigen3.pc : math/eigen3
- xorgproto>=0 : x11/xorgproto
- xorgproto>=0 : x11/xorgproto
- qt5-buildtools>=5.15.2 : devel/qt5-buildtools
- qt5-qmake>=5.15.2 : devel/qt5-qmake
- Runtime dependencies:
-
- eigen3.pc : math/eigen3
- Library dependencies:
-
- libmsym.so : science/libmsym
- libsymspg.so : science/spglib
- libarchive.so.13 : archivers/libarchive
- libGL.so : graphics/libglvnd
- libGLEW.so : graphics/glew
- libGLU.so : graphics/libGLU
- libQt5Concurrent.so : devel/qt5-concurrent
- libQt5Core.so : devel/qt5-core
- libQt5Gui.so : x11-toolkits/qt5-gui
- libQt5Network.so : net/qt5-network
- libQt5Svg.so : graphics/qt5-svg
- libQt5Widgets.so : x11-toolkits/qt5-widgets
- This port is required by:
- for Libraries
-
- science/avogadro2
- science/kalzium
- science/py-avogadrolibs
- Configuration Options:
- ===> The following configuration options are available for avogadrolibs-1.95.1_1:
HDF5=off: HDF-5 data format support
LIBARCHIVE=on: Enable optional Libarchive features
LIBMSYM=on: Enable optional features using libmsym
MMTF=on: Enable optional features using mmtf
OPENGL=on: 2D/3D rendering support via OpenGL
QT5=on: Qt 5 toolkit support
SPGLIB=on: Enable optional features using spglib
VTK=off: Enable libraries that use VTK
===> Use 'make config' to modify these settings
- Options name:
- science_avogadrolibs
- USES:
- cmake:testing compiler:c++17-lang eigen:3,build,run libarchive gl qt:5
- FreshPorts was unable to extract/find any pkg message
- Master Sites:
|
| Commit History - (may be incomplete: see SVNWeb link above for full details) |
| Date | By | Description |
|---|
16 Jun 2022 15:13:01
  1.95.1_1
|
Po-Chuan Hsieh (sunpoet) |
*/*: Replace science/szip with science/libaec
- Bump PORTREVISION of dependent ports for dependency change
szip does not allow redistribution in binary form without proper commercial
license. Its LICENSE_PERMS should be set to no-auto-accept which blocks building
this port, therefore building dependent ports are also blocked. Switch all
dependent ports to science/libaec to avoid conflicts and license issue.
PR: 228743, 246097, 250165 |
05 Feb 2022 09:44:21
1.95.1
|
Yuri Victorovich (yuri) |
science/avogadrolibs: Update 1.94.0 -> 1.95.1 |
16 Aug 2021 01:32:15
1.94.0_2
|
Yuri Victorovich (yuri) |
science/[,py-]spglib: Update 1.16.1 -> 1.16.2
Reported by: portscout |
22 Jun 2021 18:53:08
1.94.0_1
|
Kevin Bowling (kbowling) |
graphics/mesa-libs: Bump reverse deps for libglvnd
Per discussion with bapt on helping pkg handle the changing of these
deps and avoiding impossible upgrade senarios.
PR: 246767
Reviewed by: manu, bapt
Approved by: x11
Differential Revision: https://reviews.freebsd.org/D30824 |
04 Jun 2021 18:15:39
1.94.0
|
Yuri Victorovich (yuri) |
science/avogadrolibs: Remove redundant line |
04 Jun 2021 17:56:40
1.94.0
|
Yuri Victorovich (yuri) |
science/avogadrolibs: Update 1.93.1 -> 1.94.0
Reported by: portscout |
22 May 2021 08:33:35
1.93.1
|
Yuri Victorovich (yuri) |
science/avogadrolibs: Update 1.93.0 -> 1.93.1 |
07 Apr 2021 08:09:01
1.93.0_1
|
Mathieu Arnold (mat) |
One more small cleanup, forgotten yesterday.
Reported by: lwhsu |
06 Apr 2021 14:31:07
1.93.0_1
|
Mathieu Arnold (mat) |
Remove # $FreeBSD$ from Makefiles. |
12 Dec 2020 17:04:37
  1.93.0_1
|
thierry |
- Upgrade math/eigen3 to 3.3.8;
- Add some dependencies which might be detected by Find_Package but not
registered;
- Bump PORTREVISION of consumers.
PR: 250833
Submitted by: /me
Approved by: tcberner@ (KDE / maintainer) + exp-run |
27 Apr 2020 16:09:57
1.93.0
|
yuri |
science/avogadrolibs: Remove a broken option VTK set to default by mistake
Reported by: cmt |
26 Apr 2020 22:04:10
1.93.0
|
yuri |
math/vtk8: Update 8.1.2 -> 8.2.0
science/liggght is updated 3.8.0 -> 3.8.0-26 because only later revisions
support vtk8-8.2.0
3 dependent ports bumped. |
06 Feb 2020 05:09:44
1.93.0
|
yuri |
science/avogadrolibs: Update 1.92.1 -> 1.93.0
Reported by: portscout |
26 Jul 2019 20:46:57
1.92.1_1
|
gerald |
Bump PORTREVISION for ports depending on the canonical version of GCC
as defined in Mk/bsd.default-versions.mk which has moved from GCC 8.3
to GCC 9.1 under most circumstances now after revision 507371.
This includes ports
- with USE_GCC=yes or USE_GCC=any,
- with USES=fortran,
- using Mk/bsd.octave.mk which in turn features USES=fortran, and
- with USES=compiler specifying openmp, nestedfct, c11, c++0x, c++11-lang,
c++11-lib, c++14-lang, c++17-lang, or gcc-c++11-lib
plus, everything INDEX-11 shows with a dependency on lang/gcc9 now.
PR: 238330 |
11 May 2019 18:10:31
1.92.1
|
yuri |
science/avogadrolibs: Update 1.92.0 -> 1.92.1 |
16 Feb 2019 08:02:02
1.92.0_5
|
yuri |
Move: science/mmtf -> science/mmtf-cpp
Also update its COMMENT to be more descriptive |
12 Feb 2019 06:18:06
1.92.0_5
|
yuri |
science/mmtf: Update g20180730 -> 1.0.0
Bump science/avogadrolibs since it uses this headers-only library. |
16 Jan 2019 11:13:45
1.92.0_4
|
tijl |
Fix Qt5 symbol version scripts to put the catch-all clause first. When
a symbol matches multiple clauses the last one takes precedence. If the
catch-all is last it captures everything. In the case of Qt5 libraries
this caused all symbols to have a Qt_5 label while some should have
Qt_5_PRIVATE_API. This only affects lld because GNU ld always gives the
catch-all lowest priority.
Older versions of Qt5Webengine exported some memory allocation symbols from
the bundled Chromium. Version 5.9 stopped exporting these [1] but the
symbols were kept as weak wrappers for the standard allocation functions to
maintain binary compatibility. [2][3] The problem is that the call to the
standard function in these weak wrappers is only resolved to the standard
function if there's a call to this standard function in other parts of
Qt5Webengine, because only then is there a non-weak symbol that takes
precedence over the weak one. If there's no such non-weak symbol the call (Only the first 15 lines of the commit message are shown above  ) |
05 Jan 2019 22:46:54
1.92.0_3
|
sunpoet |
Update science/hdf5 to 1.10.4
- Bump PORTREVISION of dependent ports for shlib change
Changes: https://portal.hdfgroup.org/display/support/HDF5%201.10.4#releasenotes
PR: 233070
Submitted by: wen |
26 Dec 2018 09:06:35
1.92.0_2
|
tcberner |
Update math/eigen3 to 3.3.7
- http://eigen.tuxfamily.org/index.php?title=ChangeLog#Eigen_3.3.6
- http://eigen.tuxfamily.org/index.php?title=ChangeLog#Eigen_3.3.7 |
25 Dec 2018 20:25:40
1.92.0_1
|
tcberner |
Change cmake default behaviour to outsource.
Ports that build out of source now simply can use "USES=cmake"
instead of "USES=cmake:outsource". Ports that fail to build
out of source now need to specify "USES=cmake:insource".
I tried to only set insource where explictely needed.
PR: 232038
Exp-run by: antoine |
12 Dec 2018 01:35:36
1.92.0_1
|
gerald |
Bump PORTREVISION for ports depending on the canonical version of GCC
defined via Mk/bsd.default-versions.mk which has moved from GCC 7.4 t
GCC 8.2 under most circumstances.
This includes ports
- with USE_GCC=yes or USE_GCC=any,
- with USES=fortran,
- using Mk/bsd.octave.mk which in turn features USES=fortran, and
- with USES=compiler specifying openmp, nestedfct, c11, c++0x, c++11-lang,
c++11-lib, c++14-lang, c++17-lang, or gcc-c++11-lib
plus, as a double check, everything INDEX-11 showed depending on lang/gcc7.
PR: 231590 |
09 Nov 2018 06:25:39
1.92.0
|
yuri |
science/avogadrolibs: Update 1.91.0-107 -> 1.92.0
Also add 2 pull requests that fix obvious problems. |
18 Oct 2018 22:31:27
1.91.0.107
|
yuri |
science/avogadrolibs: Update 1.91.0 -> 1.91.0-107
jsoncpp isn't used any more, mmtf is now used. |
17 Oct 2018 07:04:19
1.91.0_1
|
yuri |
science/avogadrolibs: Add options |
17 Oct 2018 01:02:16
1.91.0
|
yuri |
New port: science/avogadrolibs: Avogadro2 libraries for chemical editor and
visualization applications |
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