23:07 Yuri Victorovich (yuri) 

science/{,py-}avogadrolibs: update 1.97.0 → 1.99.0

Reported by:	portscout

    e2d8c2c

06:51 Yuri Victorovich (yuri) 

science/{,py-}spglib: update 2.0.2 → 2.1.0

Reported by:	portscout

    773d138

09:09 Gerald Pfeifer (gerald) 

*: Bump PORTREVISIONs for math/mpc update to 1.3.1

    8d3e020

08:14 Yuri Victorovich (yuri) 

math/vtk9: Update 9.1.0 -> 9.2.2

    7406d45

07:09 Yuri Victorovich (yuri) 

science/{,py-}avogadrolibs: Update 1.95.1 -> 1.97.0

    0e793c1

02:36 Yuri Victorovich (yuri) 

science/spglib: Update 1.16.5 -> 2.0.1

    1390f54

10:20 Felix Palmen (zirias) 

Mk/Uses: always use colon for build/run suffix

Most USES use a colon for build/run(/test) suffixes. Change kde.mk,
qt.mk and pyqt.mk to do the same, and update all ports using that.

Document in CHANGES.

PR:			266034
Exp-run by:		antoine
Approved by:		tcberner (mentor)
Differential Revision:	https://reviews.freebsd.org/D36349

    ddae4e9

21:10 Stefan Eßer (se) 

Add WWW entries to port Makefiles

It has been common practice to have one or more URLs at the end of the
ports' pkg-descr files, one per line and prefixed with "WWW:". These
URLs should point at a project website or other relevant resources.

Access to these URLs required processing of the pkg-descr files, and
they have often become stale over time. If more than one such URL was
present in a pkg-descr file, only the first one was tarnsfered into
the port INDEX, but for many ports only the last line did contain the
port specific URL to further information.

There have been several proposals to make a project URL available as
a macro in the ports' Makefiles, over time.

This commit implements such a proposal and moves one of the WWW: entries
of each pkg-descr file into the respective port's Makefile. A heuristic
attempts to identify the most relevant URL in case there is more than
one WWW: entry in some pkg-descr file. URLs that are not moved into the
Makefile are prefixed with "See also:" instead of "WWW:" in the pkg-descr
files in order to preserve them.

There are 1256 ports that had no WWW: entries in pkg-descr files. These
ports will not be touched in this commit.

The portlint port has been adjusted to expect a WWW entry in each port
Makefile, and to flag any remaining "WWW:" lines in pkg-descr files as
deprecated.

Approved by:		portmgr (tcberner)

    b7f0544

14:35 Tobias C. Berner (tcberner) 

science/hdf5: bump PORTREVISION of consumers

The SO-version increased in the update to 1.12.2 in
a43418b81530f7e897abfbe18dd59f44265a1a0f .

Reported by:	VVD <vvd@unislabs.com>

    5564b3b

15:13 Po-Chuan Hsieh (sunpoet) 

*/*: Replace science/szip with science/libaec

- Bump PORTREVISION of dependent ports for dependency change

szip does not allow redistribution in binary form without proper commercial
license. Its LICENSE_PERMS should be set to no-auto-accept which blocks building
this port, therefore building dependent ports are also blocked. Switch all
dependent ports to science/libaec to avoid conflicts and license issue.

PR:		228743, 246097, 250165

    328ae40

09:44 Yuri Victorovich (yuri) 

science/avogadrolibs: Update 1.94.0 -> 1.95.1

    3b62222

01:32 Yuri Victorovich (yuri) 

science/[,py-]spglib: Update 1.16.1 -> 1.16.2

Reported by:	portscout

    d1a7674

18:53 Kevin Bowling (kbowling) 

graphics/mesa-libs: Bump reverse deps for libglvnd

Per discussion with bapt on helping pkg handle the changing of these
deps and avoiding impossible upgrade senarios.

PR:		246767
Reviewed by:	manu, bapt
Approved by:	x11
Differential Revision:	https://reviews.freebsd.org/D30824

    da3162c

18:15 Yuri Victorovich (yuri) 

science/avogadrolibs: Remove redundant line

    3e626c0

17:56 Yuri Victorovich (yuri) 

science/avogadrolibs: Update 1.93.1 -> 1.94.0

Reported by:	portscout

    45f274d

08:33 Yuri Victorovich (yuri) 

science/avogadrolibs: Update 1.93.0 -> 1.93.1

    b87d813

08:09 Mathieu Arnold (mat) 

One more small cleanup, forgotten yesterday.
Reported by:	lwhsu

    cf118cc

14:31 Mathieu Arnold (mat) 

Remove # $FreeBSD$ from Makefiles.

    305f148

17:04 thierry 

- Upgrade math/eigen3 to 3.3.8;

- Add some dependencies which might be detected by Find_Package but not
registered;

- Bump PORTREVISION of consumers.

PR:		250833
Submitted by:	/me
Approved by:	tcberner@ (KDE / maintainer) + exp-run

 

16:09 yuri 

science/avogadrolibs: Remove a broken option VTK set to default by mistake

Reported by:	cmt

 

22:04 yuri 

math/vtk8: Update 8.1.2 -> 8.2.0

science/liggght is updated 3.8.0 -> 3.8.0-26 because only later revisions
support vtk8-8.2.0
3 dependent ports bumped.

 

05:09 yuri 

science/avogadrolibs: Update 1.92.1 -> 1.93.0

Reported by:	portscout

 

20:46 gerald 

Bump PORTREVISION for ports depending on the canonical version of GCC
as defined in Mk/bsd.default-versions.mk which has moved from GCC 8.3
to GCC 9.1 under most circumstances now after revision 507371.

This includes ports
 - with USE_GCC=yes or USE_GCC=any,
 - with USES=fortran,
 - using Mk/bsd.octave.mk which in turn features USES=fortran, and
 - with USES=compiler specifying openmp, nestedfct, c11, c++0x, c++11-lang,
   c++11-lib, c++14-lang, c++17-lang, or gcc-c++11-lib
plus, everything INDEX-11 shows with a dependency on lang/gcc9 now.

PR:		238330

 

18:10 yuri 

science/avogadrolibs: Update 1.92.0 -> 1.92.1

 

08:02 yuri 

Move: science/mmtf -> science/mmtf-cpp

Also update its COMMENT to be more descriptive

 

06:18 yuri 

science/mmtf: Update g20180730 -> 1.0.0

Bump science/avogadrolibs since it uses this headers-only library.

 

11:13 tijl 

Fix Qt5 symbol version scripts to put the catch-all clause first.  When
a symbol matches multiple clauses the last one takes precedence.  If the
catch-all is last it captures everything.  In the case of Qt5 libraries
this caused all symbols to have a Qt_5 label while some should have
Qt_5_PRIVATE_API.  This only affects lld because GNU ld always gives the
catch-all lowest priority.

Older versions of Qt5Webengine exported some memory allocation symbols from
the bundled Chromium.  Version 5.9 stopped exporting these [1] but the
symbols were kept as weak wrappers for the standard allocation functions to
maintain binary compatibility. [2][3]  The problem is that the call to the
standard function in these weak wrappers is only resolved to the standard
function if there's a call to this standard function in other parts of
Qt5Webengine, because only then is there a non-weak symbol that takes
precedence over the weak one.  If there's no such non-weak symbol the call
in the weak wrapper resolves to the weak wrapper itself creating an infinite
call loop that overflows the stack and causes a crash.  Some of the
allocation functions are variants of C++ new and delete and it probably
depends on the compiler whether these variants are used in other parts of
Qt5Webengine.

Remove the weak wrappers (make them Linux specific).  This isn't binary
compatible but we are already breaking that with the changes to the symbol
versions.

[1]
https://github.com/qt/qtwebengine/commit/5c2cbfccf9aafb547b0b30914c4056abd25942a4
[2]
https://github.com/qt/qtwebengine/commit/2ed5054e3a800fa97c2c9e920ba1e6ea4b6ef2a5
[3]
https://github.com/qt/qtwebengine/commit/009f5ebb4bd6e50188671e0815a5dae6afe39db5

Bump all ports that depend on Qt5.

PR:		234070
Exp-run by:	antoine
Approved by:	kde (adridg)

 

22:46 sunpoet 

Update science/hdf5 to 1.10.4

- Bump PORTREVISION of dependent ports for shlib change

Changes:	https://portal.hdfgroup.org/display/support/HDF5%201.10.4#releasenotes
PR:		233070
Submitted by:	wen

 

09:06 tcberner 

Update math/eigen3 to 3.3.7

- http://eigen.tuxfamily.org/index.php?title=ChangeLog#Eigen_3.3.6
- http://eigen.tuxfamily.org/index.php?title=ChangeLog#Eigen_3.3.7

 

20:25 tcberner 

Change cmake default behaviour to outsource.

Ports that build out of source now simply can use "USES=cmake"
instead of "USES=cmake:outsource". Ports that fail to build
out of source now need to specify "USES=cmake:insource".

I tried to only set insource where explictely needed.

PR:		232038
Exp-run by:	antoine

 

01:35 gerald 

Bump PORTREVISION for ports depending on the canonical version of GCC
defined via Mk/bsd.default-versions.mk which has moved from GCC 7.4 t
GCC 8.2 under most circumstances.

This includes ports
 - with USE_GCC=yes or USE_GCC=any,
 - with USES=fortran,
 - using Mk/bsd.octave.mk which in turn features USES=fortran, and
 - with USES=compiler specifying openmp, nestedfct, c11, c++0x, c++11-lang,
   c++11-lib, c++14-lang, c++17-lang, or gcc-c++11-lib
plus, as a double check, everything INDEX-11 showed depending on lang/gcc7.

PR:		231590

 

06:25 yuri 

science/avogadrolibs: Update 1.91.0-107 -> 1.92.0

Also add 2 pull requests that fix obvious problems.

 

22:31 yuri 

science/avogadrolibs: Update 1.91.0 -> 1.91.0-107

jsoncpp isn't used any more, mmtf is now used.

 

07:04 yuri 

science/avogadrolibs: Add options

 

01:02 yuri 

New port: science/avogadrolibs: Avogadro2 libraries for chemical editor and
visualization applications