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non port: science/checkmol/Makefile

Number of commits found: 35

Wednesday, 7 Sep 2022
21:10 Stefan E├čer (se) search for other commits by this committer
Add WWW entries to port Makefiles

It has been common practice to have one or more URLs at the end of the
ports' pkg-descr files, one per line and prefixed with "WWW:". These
URLs should point at a project website or other relevant resources.

Access to these URLs required processing of the pkg-descr files, and
they have often become stale over time. If more than one such URL was
present in a pkg-descr file, only the first one was tarnsfered into
the port INDEX, but for many ports only the last line did contain the
port specific URL to further information.

There have been several proposals to make a project URL available as
a macro in the ports' Makefiles, over time.

This commit implements such a proposal and moves one of the WWW: entries
of each pkg-descr file into the respective port's Makefile. A heuristic
attempts to identify the most relevant URL in case there is more than
one WWW: entry in some pkg-descr file. URLs that are not moved into the
Makefile are prefixed with "See also:" instead of "WWW:" in the pkg-descr
files in order to preserve them.

There are 1256 ports that had no WWW: entries in pkg-descr files. These
ports will not be touched in this commit.

The portlint port has been adjusted to expect a WWW entry in each port
Makefile, and to flag any remaining "WWW:" lines in pkg-descr files as
deprecated.

Approved by:		portmgr (tcberner)
commit hash: b7f05445c00f2625aa19b4154ebcbce5ed2daa52 commit hash: b7f05445c00f2625aa19b4154ebcbce5ed2daa52 commit hash: b7f05445c00f2625aa19b4154ebcbce5ed2daa52 commit hash: b7f05445c00f2625aa19b4154ebcbce5ed2daa52 b7f0544
Wednesday, 20 Jul 2022
14:22 Tobias C. Berner (tcberner) search for other commits by this committer
science: remove 'Created by' lines

A big Thank You to the original contributors of these ports:

  *  Andreas Fehlner <fehlner@gmx.de>
  *  Brad Huntting <huntting@glarp.com>
  *  Chao Shin <quakelee@cn.FreeBSD.org>
  *  Cheng-Lung Sung <clsung@FreeBSD.org>
  *  Chia-Hsing Yu <me@davidyu.org>
  *  Chris Rees <utisoft@gmail.com>
  *  David Naylor <dbn@FreeBSD.org>
  *  Dmitry Sivachenko <demon@FreeBSD.org>
  *  Ed Schouten <ed@FreeBSD.org>
  *  Eric Freeman <freebsdports@chillibear.com>
  *  Erik B Knudsen
  *  Fernan Aguero <fernan@iib.unsam.edu.ar>
  *  Frederic Culot <frederic@culot.org>
  *  Gea-Suan Lin <gslin@gslin.org>
  *  Glenn Johnson
  *  Greg Lewis <glewis@FreeBSD.org>
  *  Igor Serikov <iserikov@acm.org>
  *  Johannes Dieterich <dieterich@ogolem.org>
  *  Johannes Dieterich <jmd@FreeBSD.org>
  *  Johannes M Dieterich <jmd@FreeBSD.org>
  *  Johannes Meixner <johannes@perceivon.net>
  *  Ju Pengfei <jupengfei@gmail.com>
  *  Kay Lehmann <kay_lehmann@web.de>
  *  Klaus Aehlig <aehlig@linta.de>
  *  Kurt Kanzenbach <kurt@kmk-computers.de>
  *  Leland Wang <llwang@infor.org>
  *  Li-Lun Wang <llwang@infor.org>
  *  Markus Brueffer <markus@FreeBSD.org>
  *  NAKATA Maho <maho@FreeBSD.org>
  *  NAKATA, Maho <maho@FreeBSD.org>
  *  Nakata Maho <chat95@mbox.kyoto-inet.or.jp>
  *  Nakata Maho <maho@FreeBSD.org>
  *  Pav Lucistnik <pav@FreeBSD.org>
  *  Pav Lucistnik <pav@oook.cz>
  *  Pedro F. Giffuni
  *  Pedro F. Giffuni <giffunip@tutopia.com>
  *  Pedro Giffuni
  *  Pedro Giffuni <giffunip@asme.org>
  *  Po-Chuan Hsieh <sunpoet@FreeBSD.org>
  *  Rong-En Fan <rafan@FreeBSD.org>
  *  Ryo MIYAMOTO <rmiya@cc.hirosaki-u.ac.jp>
  *  Seamus Venasse <svenasse@polaris.ca>
  *  Shin'ya Murakami <murakami@ahs.scitec.kobe-u.ac.jp>
  *  Shin-ya MURAKAMI <murashin@gfd-dennou.org>
  *  Shin-ya Murakami <murashin@gfd-dennou.org>
  *  Stas Timokhin <devel@stasyan.com>
  *  Stephen Montgomery-Smith <stephen@math.missouri.edu>
  *  Steve Wills <steve@mouf.net
  *  Steve Wills <steve@mouf.net>
  *  Sunpoet Po-Chuan Hsieh <sunpoet@FreeBSD.org>
  *  Sunpoet Po-Chuan Hsieh <sunpoet@sunpoet.net>
  *  TAKATSU Tomonari <tota@FreeBSD.org>
  *  TAOKA Fumiyoshi
  *  Thierry Thomas <thierry@pompo.net>
  *  Tim Cas <ports@stdrand.com>
  *  Uffe Jakobsen <uffe@uffe.org>
  *  Veniamin Gvozdikov <vg@FreeBSD.org>
  *  Vsevolod Stakhov <vsevolod@highsecure.ru>
  *  Wen Heping <wen@FreeBSD.org>
  *  Wen Heping <wenheping@gmail.com>
  *  Wen heping <wenheping@gmail.com>
  *  Ying-Chieh Liao <ijliao@FreeBSD.org>
  *  Yuri Victorovich <yuri@rawbw.com>
  *  anholt@FreeBSD.org
  *  bacon@smithers.neuro.mcw.edu
  *  batman <batman@udel.edu>
  *  db
  *  gurkan@phys.ethz.ch
  *  ijliao
  *  jbacon
  *  maintainer.freebsd@xpoundit.com
  *  mi
  *  rafan@infor.org
  *  shurd@FreeBSD.org
  *  thierry@pompo.net
  *  will

With hat:	portmgr
commit hash: 46196047a4df0f85aaee442799209fdaacf03361 commit hash: 46196047a4df0f85aaee442799209fdaacf03361 commit hash: 46196047a4df0f85aaee442799209fdaacf03361 commit hash: 46196047a4df0f85aaee442799209fdaacf03361 4619604
Tuesday, 21 Jun 2022
01:17 Jose Alonso Cardenas Marquez (acm) search for other commits by this committer
lang/fpc: Fix build issues building some fpc based apps

- Add missing parameter to getdirentries syscall function
- Re-build i386 and amd64 bootstrap
- Revert fpc-i386 (FPC_USE_LIBC) build to syscall build
- Bump PORTREVISION in all ports dependant of freepascal compiler
commit hash: c77c31909fb042682ba8aed7ca69419de9332804 commit hash: c77c31909fb042682ba8aed7ca69419de9332804 commit hash: c77c31909fb042682ba8aed7ca69419de9332804 commit hash: c77c31909fb042682ba8aed7ca69419de9332804 c77c319
Saturday, 18 Jun 2022
04:23 Jose Alonso Cardenas Marquez (acm) search for other commits by this committer
*/*: Bump PORTREVISION

- lang/fpc was update to new bootstrap
commit hash: 121ccc3d2933cc7fba5c5b4ef78926541dfa9066 commit hash: 121ccc3d2933cc7fba5c5b4ef78926541dfa9066 commit hash: 121ccc3d2933cc7fba5c5b4ef78926541dfa9066 commit hash: 121ccc3d2933cc7fba5c5b4ef78926541dfa9066 121ccc3
Thursday, 3 Feb 2022
05:07 Jose Alonso Cardenas Marquez (acm) search for other commits by this committer
lang/fpc: Fix build issue on lazarus i386 and amd64

- Bump PORTREVISION
- Disable some default OPTIONS
Obtained
from:	https://forum.lazarus.freepascal.org/index.php/topic,57752.msg429737.html#msg429737
commit hash: 0de5507c162d2a04212efa2770a1a9ed56626030 commit hash: 0de5507c162d2a04212efa2770a1a9ed56626030 commit hash: 0de5507c162d2a04212efa2770a1a9ed56626030 commit hash: 0de5507c162d2a04212efa2770a1a9ed56626030 0de5507
Sunday, 1 Aug 2021
02:03 Jose Alonso Cardenas Marquez (acm) search for other commits by this committer
games/hedgewars: lang/nbc: science/checkmol: science/mol2ps: bump PORTREVISION

* lang/fpc was updated to 3.2.2
commit hash: 20948f4616704cb77eb942569eaf874288b29d02 commit hash: 20948f4616704cb77eb942569eaf874288b29d02 commit hash: 20948f4616704cb77eb942569eaf874288b29d02 commit hash: 20948f4616704cb77eb942569eaf874288b29d02 20948f4
Tuesday, 6 Apr 2021
14:31 Mathieu Arnold (mat) search for other commits by this committer
Remove # $FreeBSD$ from Makefiles.
commit hash: 305f148f482daf30dcf728039d03d019f88344eb commit hash: 305f148f482daf30dcf728039d03d019f88344eb commit hash: 305f148f482daf30dcf728039d03d019f88344eb commit hash: 305f148f482daf30dcf728039d03d019f88344eb 305f148
Thursday, 14 Jan 2021
21:11 acm search for other commits by this committer
- lang/fpc revert way like linker is taken by fpc compiler
- lang/fpc add binutils to RUN_DEPENDS
- editors/lazarus add binutils to RUN_DEPENDS
- editors/lazarus add gmake to RUN_DEPENDS
- editors/lazarus install fpc units like RUN_DEPENDS too
- Bump PORTREVISiON of fpc/lazarus ports

PR:		251712
Reported by:	amdmi3
Original commitRevision:561593 
Wednesday, 25 Nov 2020
03:13 acm search for other commits by this committer
- Bump PORTREVISION. fpc was updated to 3.2.0
Original commitRevision:556262 
Friday, 6 Mar 2020
06:26 acm search for other commits by this committer
- Remove compat < 11 dependencies from bootstrap and compiler. It could fix
problems
  when GENERIC kernel is not used.
- Rebuild bootstrap (ppcx64 and ppc386) with new changes
- Bump PORTREVISION

PR:		239135
Reported by:	fbsdbugs4  at  sentry.org
Original commitRevision:527858 
Tuesday, 31 Dec 2019
15:11 acm search for other commits by this committer
- Change LDPATH to FPC_LDPATH into lang/fpc/Makefile. It can be changed from
  /etc/make.conf
- Add FPC_LDPATH to freepascal compiler. By default it is defined to
  %%LOCALBASE%%/bin/ld.bfd but it can be changed setting FPC_LDPATH environment
  variable
- Remove compatX dependencies from bootstrap and compiler. It could fix problems
  when GENERIC kernel is not used [1]
- Rebuild bootstrap (ppcx64 and ppc386) with new changes
- Bump PORTREVISION

PR:		239135
Submitted by:	fbsdbugs4 __at__ sentry.org
Original commitRevision:521624 
Wednesday, 6 Nov 2019
16:26 antoine search for other commits by this committer
Mark a few ports BROKEN (unfetchable)
Original commitRevision:516897 
Tuesday, 3 Sep 2019
15:51 acm search for other commits by this committer
- Rebuild bootstrap (ppcx64 and ppc386) with ld patches
- Fix build on 12-STABLE and CURRENT (amd64 and i386)
- Bump PORTREVISION for all ports that depends of lang/fpc
- Add USE_BINUTILS to fpc and lazarus based ports
- Add binutils dependency to Uses/fpc.mk and Uses/lazarus.mk

PR:		240293 239934 233413 214864
Exp-run by:	antoine
Original commitRevision:510956 
Thursday, 15 Aug 2019
16:11 acm search for other commits by this committer
- Add new fpc bootstrap (i386 and x86_64). It could need less COMPATX
  dependencies in kernel
- Add patch file to solve some linking problem
- Remove LD_UNSAFE. Now it can be defined via LDPATH (/usr/bin/ld.bfd by
  default). fpc is not working with lld. We will use binutils-ports when
  ld.bfd is moved from base if lld not working on future version
  of fpc
- Bump PORTREVISION
Original commitRevision:509004 
Tuesday, 15 Jan 2019
05:43 acm search for other commits by this committer
- Add LLD_UNSAFE

PR:		214864
Original commitRevision:490347 
Thursday, 5 Apr 2018
04:52 acm search for other commits by this committer
- Migrate Mk/bsd.fpc.mk to Mk/Uses/fpc.mk
- Convert all fpc-based ports to USES=fpc

PR:             227210
Reviewed by:    portmgr
Approved by:    portmgr
Exp-run by:     antoine
Differential Revision:  https://reviews.freebsd.org/D14617
Original commitRevision:466532 
Thursday, 1 Feb 2018
07:32 acm search for other commits by this committer
- Bump PORTREVISION. lang/fpc was updated to 3.0.4
Original commitRevision:460573 
Sunday, 26 Feb 2017
17:48 acm search for other commits by this committer
- Bump PORTREVISION. Freepascal was updated
- Take maintainership
Original commitRevision:434899 
Tuesday, 12 Jan 2016
16:20 amdmi3 search for other commits by this committer
Convert LICENSE= "GPLxx # or later" to "GPLxx+"

Approved by:	portmgr blanket
Original commitRevision:405891 
Thursday, 5 Nov 2015
12:36 mat search for other commits by this committer
Fix ports that confused the meaning of WRKDIR and WRKSRC.

PR:		204056
Submitted by:	mat
Reviewed by:	bapt
Sponsored by:	Absolight
Differential Revision:	https://reviews.freebsd.org/D2735
Original commitRevision:400848 
Sunday, 9 Aug 2015
08:06 acm search for other commits by this committer
- editors/lazarus update to 1.4.2
- Add USE_FPC_RUN to bsd.fpc.mk. It add fpc units like run dependencies.
Otherwise
  fpc units only are added like build dependencies (less dependencies registered
  when they are installed with pkg).
- Remove GTK1 obsolete dependencies
- Bump all ports with dependencies of fpc-* units
- Bump all ports with dependencies of lazarus ports
- Clean up
Original commitRevision:393766 
Tuesday, 10 Jun 2014
12:52 vanilla search for other commits by this committer
Stagify.
Original commitRevision:357307 
Wednesday, 26 Mar 2014
04:04 acm search for other commits by this committer
- Bump PORTREVISION. Freepascal compiler was updated to 2.6.4
Original commitRevision:349223 
Friday, 20 Sep 2013
22:48 bapt search for other commits by this committer
Add NO_STAGE all over the place in preparation for the staging support (cat:
science)
Original commitRevision:327767 
Saturday, 1 Jun 2013
05:10 jgh search for other commits by this committer
- worked with upstream to roll versioned source distfile
- no difference in previous distfile (ie. checksum)
- remove unneeded dist_subdir directive
Original commitRevision:319554 
Saturday, 18 May 2013
20:16 jgh search for other commits by this committer
- update to 0.5

Submitted by:	pointhat (erwin@)
Original commitRevision:318449 
Sunday, 7 Apr 2013
07:11 jgh search for other commits by this committer
- update to 0.4e
- unbreak as distfile is unversioned
  - future mismatches should be investigated as potential software updates

Approved by:	portmgr (erwin)
Original commitRevision:315750 
Saturday, 30 Mar 2013
13:19 miwi search for other commits by this committer
- Mark BROKEN  checksum mismatch

Reported by:	pointyhat
Approved by:	portmgr
Original commitRevision:315612 
Saturday, 2 Mar 2013
06:30 miwi search for other commits by this committer
- Update to 0.4d

PR:		176547
Submitted by:	ports fury
Original commitRevision:313208 
Monday, 1 Oct 2012
14:45 tabthorpe search for other commits by this committer
- Reassign to the heap at maintainer's request
Original commitRevision:305130 
Thursday, 19 Apr 2012
06:51 acm search for other commits by this committer
- Bump PORTREVISION (freepascal ports were updated)
Original commit
Thursday, 23 Jun 2011
05:39 acm search for other commits by this committer
- Bump PORTREVISION. lang/fpc has been updated to 2.4.4
Original commit
Monday, 15 Nov 2010
22:50 acm search for other commits by this committer
- Welcome to fpc 2.4.2
- Bump PORTREVISIOON
Original commit
Monday, 16 Aug 2010
18:46 acm search for other commits by this committer
- Bump PORTREVISION. lang/fpc was updated and now it supports amd64
Original commit
Saturday, 19 Sep 2009
09:53 miwi search for other commits by this committer
Checkmol is a command-line utility program which reads molecular
structure files in different formats and analyzes the input
molecule for the presence of various functional groups and structural
elements. At present, approx. 200 different functional groups are
recognized. This output can be easily placed into a database table,
permitting the creation of chemical databases with a functional group
search option. Checkmol also outputs a set of statistical values derived
from a given molecule, which can also be used for quick retrieval from a
database. These values include: the number of atoms, bonds, and rings,
the number of differently hybridized carbon, oxgen, and nitrogen atoms,
the number of C=O double bonds, the number of rings of different sizes,
the number of rings containing nitrogen, oxygen, sulfur, the number of
aromatic rings, the number of heterocyclic rings, etc. The combination
of all of these values for a given molecule represents some kind of
"fingerprint" which is useful for rapid pre-selection in a database
structure/substructure search prior to a full atom-by-atom match.

WWW: http://merian.pch.univie.ac.at/~nhaider/cheminf/cmmm.html

PR:             ports/138670
Feature safe:yes
Submitted by:   Fernan Aguero <fernan at iib.unsam.edu.ar>
Original commit

Number of commits found: 35