19:03 Thierry Thomas (thierry) 

*/*: bump PORTREVISION after the upgrade of OpenBLAS

PR:		273219

    ab17137

20:40 Yuri Victorovich (yuri) 

science/erkale: Fix build with clang16 by adding USE_CXXSTD.

Reported by:	fallout

    610b94d2

09:09 Gerald Pfeifer (gerald) 

*: Bump PORTREVISIONs for math/mpc update to 1.3.1

    8d3e020

14:47 Thierry Thomas (thierry) 

science/*: bump PORTREVISION in consumers of libXC

    cceff44

17:58 Thierry Thomas (thierry) 

science/erkale: chase libXC 6.0.0

Patch from
<https://github.com/susilehtola/erkale/commit/d507f5c0aa10614f00b1fa77ddb944490a5a7706>.

PR:		267358
Approved by:	yuri (maintainer)

    fb5d842

21:10 Stefan Eßer (se) 

Add WWW entries to port Makefiles

It has been common practice to have one or more URLs at the end of the
ports' pkg-descr files, one per line and prefixed with "WWW:". These
URLs should point at a project website or other relevant resources.

Access to these URLs required processing of the pkg-descr files, and
they have often become stale over time. If more than one such URL was
present in a pkg-descr file, only the first one was tarnsfered into
the port INDEX, but for many ports only the last line did contain the
port specific URL to further information.

There have been several proposals to make a project URL available as
a macro in the ports' Makefiles, over time.

This commit implements such a proposal and moves one of the WWW: entries
of each pkg-descr file into the respective port's Makefile. A heuristic
attempts to identify the most relevant URL in case there is more than
one WWW: entry in some pkg-descr file. URLs that are not moved into the
Makefile are prefixed with "See also:" instead of "WWW:" in the pkg-descr
files in order to preserve them.

There are 1256 ports that had no WWW: entries in pkg-descr files. These
ports will not be touched in this commit.

The portlint port has been adjusted to expect a WWW entry in each port
Makefile, and to flag any remaining "WWW:" lines in pkg-descr files as
deprecated.

Approved by:		portmgr (tcberner)

    b7f0544

14:46 Dima Panov (fluffy) 

*/*: bump all consumers after recent boost upgrade

    4cf39de

14:35 Tobias C. Berner (tcberner) 

science/hdf5: bump PORTREVISION of consumers

The SO-version increased in the update to 1.12.2 in
a43418b81530f7e897abfbe18dd59f44265a1a0f .

Reported by:	VVD <vvd@unislabs.com>

    5564b3b

15:13 Po-Chuan Hsieh (sunpoet) 

*/*: Replace science/szip with science/libaec

- Bump PORTREVISION of dependent ports for dependency change

szip does not allow redistribution in binary form without proper commercial
license. Its LICENSE_PERMS should be set to no-auto-accept which blocks building
this port, therefore building dependent ports are also blocked. Switch all
dependent ports to science/libaec to avoid conflicts and license issue.

PR:		228743, 246097, 250165

    328ae40

19:51 Yuri Victorovich (yuri) 

science/erkale{,-pseudopotentials}: Update g20200426 -> g20220405

    0a8721e

19:41 Tobias C. Berner (tcberner) 

math/gsl: bump portrevision of consumers after update to 2.7.1

PR:		260201

    654acd8

09:25 Danilo Egea Gondolfo (danilo) 

math/armadillo: Update to 10.6.2

Drop maintainership.

    170cb07

19:31 Tobias C. Berner (tcberner) 

math/gsl: update to 2.7

From [1]

* What is new in gsl-2.7:
	* fixed doc bug for gsl_histogram_min_bin (lhcsky at 163.com)
	* fixed bug #60335 (spmatrix test failure, J. Lamb)
	* fixed bug #36577
	* clarified documentation on interpolation accelerators (V. Krishnan)
	* fixed bug #45521 (erroneous GSL_ERROR_NULL in ode-initval2, thanks to M.
Sitte)
	* fixed doc bug #59758
	* fixed bug #58202 (rstat median for n=5)
	* added support for native C complex number types in gsl_complex
	   when using a C11 compiler
	* upgraded to autoconf 2.71, automake 1.16.3, libtool 2.4.6
	* updated exponential fitting example for nonlinear least squares
	* added banded LU decomposition and solver (gsl_linalg_LU_band)
	* New functions added to the library:
	      - gsl_matrix_norm1
	      - gsl_spmatrix_norm1
	      - gsl_matrix_complex_conjtrans_memcpy
	      - gsl_linalg_QL: decomp, unpack
	      - gsl_linalg_complex_QR_* (thanks to Christian Krueger)
	      - gsl_vector_sum
	      - gsl_matrix_scale_rows
	      - gsl_matrix_scale_columns
	      - gsl_multilarge_linear_matrix_ptr
	      - gsl_multilarge_linear_rhs_ptr
	      - gsl_spmatrix_dense_add (renamed from gsl_spmatrix_add_to_dense)
	      - gsl_spmatrix_dense_sub
	      - gsl_linalg_cholesky_band: solvem, svxm, scale, scale_apply
	      - gsl_linalg_QR_UD: decomp, lssolve
	      - gsl_linalg_QR_UU: decomp, lssolve, QTvec
	      - gsl_linalg_QR_UZ: decomp
	      - gsl_multifit_linear_lcurvature
	      - gsl_spline2d_eval_extrap
	* bug fix in checking vector lengths in gsl_vector_memcpy (dieggsy@pm.me)
	* made gsl_sf_legendre_array_index() inline and documented
	      - gsl_sf_legendre_nlm()

[1] http://git.savannah.gnu.org/cgit/gsl.git/tree/NEWS

PR:		256423
Exp-run by:	antoine

    63e653a

01:39 Yuri Victorovich (yuri) 

science/erkale: Update g20200426 -> g20210215

    fff94b2

08:09 Mathieu Arnold (mat) 

One more small cleanup, forgotten yesterday.
Reported by:	lwhsu

    cf118cc

14:31 Mathieu Arnold (mat) 

Remove # $FreeBSD$ from Makefiles.

    305f148

22:30 danilo 

math/armadillo: Update to 10.1.1

 

13:12 danilo 

- Update math/armadillo to 9.900.2

 

21:19 danilo 

- Update math/armadillo to 9.870.2

 

16:43 yuri 

science/erkale: Change the default flavor to 'parallel'; Remove the redundant
OPENBLAS_LIB_DEPENDS line

parallel is what should be a default for production use.

Approved by:	portmgr (flavors were approved by portmgr when the port was
committed)

 

16:39 yuri 

Bump 37 ports depending on math/openblas through USES=blaslapack:openblas
because after the recent math/openblas update the library name changed in
openblas

 

16:11 yuri 

Bump 46 ports depending on math/openblas because the after the recent
math/openblas update the library name changed in openblas.

 

06:12 yuri 

science/erkale: Update g20200416 -> g20200426

 

19:00 yuri 

science/erkale: Update g20200319 -> g20200416

 

14:48 pkubaj 

science/erkale: fix build on GCC architectures

Use newer GCC:
/usr/local/include/armadillo_bits/compiler_setup.hpp:190:6: error: #error "***
newer compiler required ***"

 

18:24 yuri 

science/erkale: Update g20200110 -> g20200319

 

21:56 jbeich 

Drop dependency on devel/openmp

- Drop if devel/llvm* was used as a substitute

Approved by:	yuri, rene (earlier version)
Differential Revision:	https://reviews.freebsd.org/D23020

 

14:17 swills 

Fix math/openblas and bump dependent ports

* Fix build on i386 [1]
* Fix science/code_saturne build with new openblas [2]
* Avoid installing private headers [3]
* Prevent build from optimizing for host by correcting build confg [4]
* Bump portrevision of dependent ports [5]

This is correcting issues from r523749 [1][2][4] and r515970 [3]

PR:		231371
Reported by:	build cluster [1]
Reported by:	Dima Pasechnik <dimpase+freebsd@gmail.com> [2]
Reported by:	many [5]
Reviewed by:	mat, bapt
Approved by:	implicit, since this is a build fix

 

22:03 swills 

math/openblas: Update to 0.3.7

While here, improve formatting and fix build of dependant ports.

PR:		231371
Submitted by:	yuri (initial version), pkubaj (ppc fixes)
Approved by:	Eijiro Shibusawa <phd_kimberlite@yahoo.co.jp> (maintainer)

 

04:29 yuri 

science/erkale: Update g20191120 -> g20200110

 

16:27 yuri 

science/erkale: Update g20190812 -> g20191120

 

03:28 linimon 

Unmark broken on aarch64.

Submitted by:	emaste (TRYBROKEN run)
Approved by:	portmgr (tier-2 blanket)

 

23:41 tcberner 

math/gsl: update to 2.6

- math/p5-Math-GSL does not seem to have any upstream activity to make it work
with this version -> mark it broken
  - this also breaks the two consumers of this port

- biology/gemma: has a conflict with cblas, and is makred broken.

PR:		241363
Exp-run by:	antoine

 

08:59 antoine 

Fix LIB_DEPENDS

 

18:59 jbeich 

devel/openmp: update to 9.0.0

- Connect tests to the framework to help QA remaining patches
- Force rebuild all consumers after https://reviews.llvm.org/D59783

Changes:	http://llvm.org/viewvc/llvm-project/openmp/tags/RELEASE_900/final/?view=log
ABI:		https://abi-laboratory.pro/tracker/timeline/llvm_openmp/

 

19:58 jbeich 

Switch default devel/llvm* to 90

PR:		239682
Reviewed by:	tobik
Differential Revision:	https://reviews.freebsd.org/D21172

 

06:19 yuri 

science/erkale: Fix RUN_DEPENDS

Reported by:	fallout

 

09:33 yuri 

science/erkale: correction

 

09:32 yuri 

science/erkale: Update g20190412 -> g20190812

 

20:46 gerald 

Bump PORTREVISION for ports depending on the canonical version of GCC
as defined in Mk/bsd.default-versions.mk which has moved from GCC 8.3
to GCC 9.1 under most circumstances now after revision 507371.

This includes ports
 - with USE_GCC=yes or USE_GCC=any,
 - with USES=fortran,
 - using Mk/bsd.octave.mk which in turn features USES=fortran, and
 - with USES=compiler specifying openmp, nestedfct, c11, c++0x, c++11-lang,
   c++11-lib, c++14-lang, c++17-lang, or gcc-c++11-lib
plus, everything INDEX-11 shows with a dependency on lang/gcc9 now.

PR:		238330

 

20:00 danilo 

- Update math/armadillo to 9.600.4

Reported by:	Nina Santi

 

13:16 gerald 

Related to revision 499061 bump ports with USES=fortran to have them
benefit from the improved situation where libgcc_s is only used when
absolutely necessary.

Suggested by:	tijl

 

22:23 yuri 

science/erkale: Update g20190318 -> g20190412

 

22:20 linimon 

Mark as broken on aarch64: fails to configure:

  clang-8: error: no such file or directory: 'NOTFOUND'

Approved by:	portmgr (tier-2 blanket)

 

06:17 yuri 

science/erkale: Update g20190118 -> g20190318

Bug fixes and documentation update.

 

12:23 jbeich 

Switch to devel/llvm80 for DEFAULT_VERSIONS

PR:		235215

 

13:19 antoine 

Remove bogus dependency, erkale links against libomp from llvm

 

16:25 yuri 

science/erkale: Update 0c285c1 -> 4bd3930

 

09:40 yuri 

science/erkale: Update 0927d8c -> 0c285c1

Port changes:
* Add the standard location for erkale's pseudopotentials.
* Add pkg-message suggesting to install erkale-pseudopotentials

 

22:46 sunpoet 

Update science/hdf5 to 1.10.4

- Bump PORTREVISION of dependent ports for shlib change

Changes:	https://portal.hdfgroup.org/display/support/HDF5%201.10.4#releasenotes
PR:		233070
Submitted by:	wen

 

20:25 tcberner 

Change cmake default behaviour to outsource.

Ports that build out of source now simply can use "USES=cmake"
instead of "USES=cmake:outsource". Ports that fail to build
out of source now need to specify "USES=cmake:insource".

I tried to only set insource where explictely needed.

PR:		232038
Exp-run by:	antoine

 

08:33 yuri 

science/erkale: BROKEN on i386

Reported by:	fallout

 

09:21 yuri 

science/erkale: Please approve flavorization: serial and parallel

Allow to concurrently build and install both serial and parallel versions.

Approved by:	portmgr
Differential Revision:	D18315

 

01:35 gerald 

Bump PORTREVISION for ports depending on the canonical version of GCC
defined via Mk/bsd.default-versions.mk which has moved from GCC 7.4 t
GCC 8.2 under most circumstances.

This includes ports
 - with USE_GCC=yes or USE_GCC=any,
 - with USES=fortran,
 - using Mk/bsd.octave.mk which in turn features USES=fortran, and
 - with USES=compiler specifying openmp, nestedfct, c11, c++0x, c++11-lang,
   c++11-lib, c++14-lang, c++17-lang, or gcc-c++11-lib
plus, as a double check, everything INDEX-11 showed depending on lang/gcc7.

PR:		231590

 

13:32 danilo 

- Update math/armadillo to 9.200.4

 

17:56 yuri 

New port: science/erkale: Quantum chemistry program to solve the electronic
structure of atoms