| Port details on branch 2022Q3 |
- massxpert Software suite for (bio)chemists
- 6.0.3_1 science
 =0      6.0.3_1Version of this port present on the latest quarterly branch. - There is no maintainer for this port.
- Any concerns regarding this port should be directed to the FreeBSD Ports mailing list via ports@FreeBSD.org
- Port Added: 2010-05-20 09:43:44
- Last Update: 2024-01-27 09:23:07
- Commit Hash: cca6bb3
- License: GPLv3
- WWW:
- http://www.msxpertsuite.org
- Description:
- The massXpert project aims at providing (bio)chemists with a software
package allowing the following:
* User-specific atom definitions and polymer chemistry definitions;
* Powerful sequence editing with user-defined glyphs for each monomer
and monomer chemical modification. Multi-region selections;
* Polymer sequence chemical/enzymatic cleavage;
* Intramolecular cross-linking, like disulfide bonds with total resolution
of the peptides generated upon enzymatic cleavage;
* Gas-phase fragmentation of oligomers;
* Mass-to-charge ratio calculations with inline change of ionization agent;
* Calculation of net electrical charge and of isoelectric point (even by
taking into account monomer modifications if polymer is a protein);
* Simulation of isotopic patterns for any chemical formula and z charge;
* A number of plugins allow 1) translation of the sequence from one format
to another (using a dictionary, like between the 1-letter code and the 3-letter
code of proteins) 2) conversion of number format according to any localized
number format 3) sort mass lists.
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- Manual pages:
- FreshPorts has no man page information for this port.
- pkg-plist: as obtained via:
make generate-plist - Dependency lines:
-
- massxpert>0:science/massxpert
- To install the port:
- cd /usr/ports/science/massxpert/ && make install clean
- To add the package, run one of these commands:
- pkg install science/massxpert
- pkg install massxpert
NOTE: If this package has multiple flavors (see below), then use one of them instead of the name specified above.- PKGNAME: massxpert
- Flavors: there is no flavor information for this port.
- distinfo:
- TIMESTAMP = 1650986428
SHA256 (debichem-team-massxpert-a21ad33eee0314df202146392023dfb3868b7d84_GL0.tar.gz) = f220a6814a863c30dbf2ddb57c63a0de76c8cab48a89950f198063462d015ba3
SIZE (debichem-team-massxpert-a21ad33eee0314df202146392023dfb3868b7d84_GL0.tar.gz) = 55868621
Packages (timestamps in pop-ups are UTC):
- Dependencies
- NOTE: FreshPorts displays only information on required and default dependencies. Optional dependencies are not covered.
- Build dependencies:
-
- cmake : devel/cmake-core
- ninja : devel/ninja
- qt5-buildtools>=5.15 : devel/qt5-buildtools
- qt5-qmake>=5.15 : devel/qt5-qmake
- ice.pc : x11/libICE
- sm.pc : x11/libSM
- x11.pc : x11/libX11
- xau.pc : x11/libXau
- xcb.pc : x11/libxcb
- xdmcp.pc : x11/libXdmcp
- xext.pc : x11/libXext
- xrender.pc : x11/libXrender
- Runtime dependencies:
-
- ice.pc : x11/libICE
- sm.pc : x11/libSM
- x11.pc : x11/libX11
- xau.pc : x11/libXau
- xcb.pc : x11/libxcb
- xdmcp.pc : x11/libXdmcp
- xext.pc : x11/libXext
- xrender.pc : x11/libXrender
- Library dependencies:
-
- libexpat.so : textproc/expat2
- libfontconfig.so : x11-fonts/fontconfig
- libfreetype.so : print/freetype2
- libpng.so : graphics/png
- libglib-2.0.so : devel/glib20
- libintl.so : devel/gettext-runtime
- libQt5Core.so : devel/qt5-core
- libQt5Gui.so : x11-toolkits/qt5-gui
- libQt5PrintSupport.so : print/qt5-printsupport
- libQt5Svg.so : graphics/qt5-svg
- libQt5Widgets.so : x11-toolkits/qt5-widgets
- libQt5Xml.so : textproc/qt5-xml
- There are no ports dependent upon this port
Configuration Options:- No options to configure
- Options name:
- science_massxpert
- USES:
- cmake compiler:c++17-lang gnome qt:5 xorg
- FreshPorts was unable to extract/find any pkg message
- Master Sites:
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