non port: science/massxpert/Makefile |
Number of commits found: 49 |
Saturday, 27 Jan 2024
|
09:23 Lorenzo Salvadore (salvadore)
*/*: Drop maintainership for some of my ports
Drop maintainership for ports for which I do not have much interest any
more or for which I do not have as much time as they require, so that I
can focus more on the ports I maintain and other projects both inside
and outside FreeBSD and so that they can be adopted by other
contributors.
cca6bb3 |
Wednesday, 12 Jul 2023
|
18:56 Felix Palmen (zirias)
bsd.sites.mk: Update all ports using USE_GITLAB
Replace GL_COMMIT by GL_TAGNAME in all ports. The new GL_TAGNAME is
backwards-compatible (accepting any commit hash as before), but also
understands an actual tag name. Moving to tag names where appropriate is
left to individual ports' maintainers.
Approved by: portmgr (tcberner, mentor)
Differential Revision: https://reviews.freebsd.org/D37077
7d1faa7 |
Saturday, 11 Feb 2023
|
15:41 Lorenzo Salvadore (salvadore) Author: Jan Beich
science/massxpert: drop unused libpthread-stubs
PR: 269468
Approved by: salvadore (maintainer)
9b81c04 |
Sunday, 11 Sep 2022
|
10:20 Felix Palmen (zirias)
Mk/Uses: always use colon for build/run suffix
Most USES use a colon for build/run(/test) suffixes. Change kde.mk,
qt.mk and pyqt.mk to do the same, and update all ports using that.
Document in CHANGES.
PR: 266034
Exp-run by: antoine
Approved by: tcberner (mentor)
Differential Revision: https://reviews.freebsd.org/D36349
ddae4e9 |
Wednesday, 7 Sep 2022
|
21:10 Stefan Eßer (se)
Add WWW entries to port Makefiles
It has been common practice to have one or more URLs at the end of the
ports' pkg-descr files, one per line and prefixed with "WWW:". These
URLs should point at a project website or other relevant resources.
Access to these URLs required processing of the pkg-descr files, and
they have often become stale over time. If more than one such URL was
present in a pkg-descr file, only the first one was tarnsfered into
the port INDEX, but for many ports only the last line did contain the
port specific URL to further information.
There have been several proposals to make a project URL available as
a macro in the ports' Makefiles, over time.
This commit implements such a proposal and moves one of the WWW: entries
of each pkg-descr file into the respective port's Makefile. A heuristic
attempts to identify the most relevant URL in case there is more than
one WWW: entry in some pkg-descr file. URLs that are not moved into the
Makefile are prefixed with "See also:" instead of "WWW:" in the pkg-descr
files in order to preserve them.
There are 1256 ports that had no WWW: entries in pkg-descr files. These
ports will not be touched in this commit.
The portlint port has been adjusted to expect a WWW entry in each port
Makefile, and to flag any remaining "WWW:" lines in pkg-descr files as
deprecated.
Approved by: portmgr (tcberner)
b7f0544 |
Wednesday, 20 Jul 2022
|
14:22 Tobias C. Berner (tcberner)
science: remove 'Created by' lines
A big Thank You to the original contributors of these ports:
* Andreas Fehlner <fehlner@gmx.de>
* Brad Huntting <huntting@glarp.com>
* Chao Shin <quakelee@cn.FreeBSD.org>
* Cheng-Lung Sung <clsung@FreeBSD.org>
* Chia-Hsing Yu <me@davidyu.org>
* Chris Rees <utisoft@gmail.com>
* David Naylor <dbn@FreeBSD.org>
* Dmitry Sivachenko <demon@FreeBSD.org>
* Ed Schouten <ed@FreeBSD.org>
* Eric Freeman <freebsdports@chillibear.com>
* Erik B Knudsen
* Fernan Aguero <fernan@iib.unsam.edu.ar>
* Frederic Culot <frederic@culot.org>
* Gea-Suan Lin <gslin@gslin.org>
* Glenn Johnson
* Greg Lewis <glewis@FreeBSD.org>
* Igor Serikov <iserikov@acm.org>
* Johannes Dieterich <dieterich@ogolem.org>
* Johannes Dieterich <jmd@FreeBSD.org>
* Johannes M Dieterich <jmd@FreeBSD.org>
* Johannes Meixner <johannes@perceivon.net>
* Ju Pengfei <jupengfei@gmail.com>
* Kay Lehmann <kay_lehmann@web.de>
* Klaus Aehlig <aehlig@linta.de>
* Kurt Kanzenbach <kurt@kmk-computers.de>
* Leland Wang <llwang@infor.org>
* Li-Lun Wang <llwang@infor.org>
* Markus Brueffer <markus@FreeBSD.org>
* NAKATA Maho <maho@FreeBSD.org>
* NAKATA, Maho <maho@FreeBSD.org>
* Nakata Maho <chat95@mbox.kyoto-inet.or.jp>
* Nakata Maho <maho@FreeBSD.org>
* Pav Lucistnik <pav@FreeBSD.org>
* Pav Lucistnik <pav@oook.cz>
* Pedro F. Giffuni
* Pedro F. Giffuni <giffunip@tutopia.com>
* Pedro Giffuni
* Pedro Giffuni <giffunip@asme.org>
* Po-Chuan Hsieh <sunpoet@FreeBSD.org>
* Rong-En Fan <rafan@FreeBSD.org>
* Ryo MIYAMOTO <rmiya@cc.hirosaki-u.ac.jp>
* Seamus Venasse <svenasse@polaris.ca>
* Shin'ya Murakami <murakami@ahs.scitec.kobe-u.ac.jp>
* Shin-ya MURAKAMI <murashin@gfd-dennou.org>
* Shin-ya Murakami <murashin@gfd-dennou.org>
* Stas Timokhin <devel@stasyan.com>
* Stephen Montgomery-Smith <stephen@math.missouri.edu>
* Steve Wills <steve@mouf.net
* Steve Wills <steve@mouf.net>
* Sunpoet Po-Chuan Hsieh <sunpoet@FreeBSD.org>
* Sunpoet Po-Chuan Hsieh <sunpoet@sunpoet.net>
* TAKATSU Tomonari <tota@FreeBSD.org>
* TAOKA Fumiyoshi
* Thierry Thomas <thierry@pompo.net>
* Tim Cas <ports@stdrand.com>
* Uffe Jakobsen <uffe@uffe.org>
* Veniamin Gvozdikov <vg@FreeBSD.org>
* Vsevolod Stakhov <vsevolod@highsecure.ru>
* Wen Heping <wen@FreeBSD.org>
* Wen Heping <wenheping@gmail.com>
* Wen heping <wenheping@gmail.com>
* Ying-Chieh Liao <ijliao@FreeBSD.org>
* Yuri Victorovich <yuri@rawbw.com>
* anholt@FreeBSD.org
* bacon@smithers.neuro.mcw.edu
* batman <batman@udel.edu>
* db
* gurkan@phys.ethz.ch
* ijliao
* jbacon
* maintainer.freebsd@xpoundit.com
* mi
* rafan@infor.org
* shurd@FreeBSD.org
* thierry@pompo.net
* will
With hat: portmgr
4619604 |
Thursday, 19 May 2022
|
19:38 Lorenzo Salvadore (salvadore)
science/massxpert: Improve port
- Remove unneeded dependency on libpcre. [1]
- Add USES= compiler:c++17-lang, consistent with
set(CMAKE_CXX_STANDARD 17) (line 65 of CMakeLists.txt). [1]
- Remove USES= tar:bzip2. [1]
- Set WWW in pkg-descr to the site reported by README.md.
Reported by: diizzy [1]
Reviewed by: diizzy
Approved by: gerald (mentor)
Differential Revision: https://reviews.freebsd.org/D35138
1e0a1b9 |
Tuesday, 26 Apr 2022
|
22:51 Lorenzo Salvadore (salvadore)
science/massxpert: Update to 6.0.3 and adopt
Summary:
- Update to 6.0.3
- Remove unneeded dependency on GCC, fixing [1]
- Style improvements
- Adopt
PR: 263541 [1]
Approved by: gerald (mentor)
Differential Revision: https://reviews.freebsd.org/D35072
c768cdd |
Tuesday, 6 Apr 2021
|
14:31 Mathieu Arnold (mat)
Remove # $FreeBSD$ from Makefiles.
305f148 |
Thursday, 28 May 2020
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08:43 danfe
Sanitize COMMENT per Section 5.6 of the FreeBSD Porter's Handbook (part 6).
|
Thursday, 7 Nov 2019
|
17:17 zeising
Add USES=xorg USES=gl, ports categories s
Add USES=xorg and USES=gl to ports in categories starting with 's'
While here, try to sprinkle other USES (mostly gnome and sdl) as needed.
|
Friday, 26 Jul 2019
|
20:46 gerald
Bump PORTREVISION for ports depending on the canonical version of GCC
as defined in Mk/bsd.default-versions.mk which has moved from GCC 8.3
to GCC 9.1 under most circumstances now after revision 507371.
This includes ports
- with USE_GCC=yes or USE_GCC=any,
- with USES=fortran,
- using Mk/bsd.octave.mk which in turn features USES=fortran, and
- with USES=compiler specifying openmp, nestedfct, c11, c++0x, c++11-lang,
c++11-lib, c++14-lang, c++17-lang, or gcc-c++11-lib
plus, everything INDEX-11 shows with a dependency on lang/gcc9 now.
PR: 238330
|
Saturday, 27 Apr 2019
|
08:46 pkubaj
science/massxpert: fix build with GCC-based architectures
Replace USE_GCC=any with USE_GCC=yes to fix build on GCC architectures.
Build failure log:
CMake Error in lib/CMakeLists.txt:
The compiler feature "cxx_decltype" is not known to CXX compiler
"GNU"
version 4.2.1.
Approved by: tcberner (mentor)
Differential Revision: https://reviews.freebsd.org/D20067
|
Saturday, 9 Mar 2019
|
23:23 yuri
science/massxpert: Update 3.4.0 -> 3.6.1
This software seems to be abandoned by its upstream, and rescued by the Debian
team.
I've set its source to Debian's GitLab server, where they source it from now.
Port changes:
* 3.6.1 is Qt5-based: remove the DEPRECATED lines
* USE_GCC seems to be needed due to clang error messages
* MAKE_JOBS_UNSAFE isn't needed
|
Wednesday, 12 Dec 2018
|
01:35 gerald
Bump PORTREVISION for ports depending on the canonical version of GCC
defined via Mk/bsd.default-versions.mk which has moved from GCC 7.4 t
GCC 8.2 under most circumstances.
This includes ports
- with USE_GCC=yes or USE_GCC=any,
- with USES=fortran,
- using Mk/bsd.octave.mk which in turn features USES=fortran, and
- with USES=compiler specifying openmp, nestedfct, c11, c++0x, c++11-lang,
c++11-lib, c++14-lang, c++17-lang, or gcc-c++11-lib
plus, as a double check, everything INDEX-11 showed depending on lang/gcc7.
PR: 231590
|
Sunday, 2 Dec 2018
|
15:41 rene
Mark QT4 ports/functionality for removal on 2019-03-15
While here, chase some KDE4 ports and functionality, these are scheduled for
removal on 2018-12-31. Change the default option/flavor to QT5 where applicable
or use alternative toolkits like GTK.
Submitted by: tcberner
Reviewed by: adridg, jhale, rene, tcberner
Approved by: portmgr (implicit, flavor hook)
Differential Revision: https://reviews.freebsd.org/D17741
|
Sunday, 29 Jul 2018
|
22:18 gerald
Bump PORTREVISION for ports depending on the canonical version of GCC
in the ports tree (via Mk/bsd.default-versions.mk and lang/gcc) which
has now moved from GCC 6 to GCC 7 by default.
This includes ports
- featuring USE_GCC=yes or USE_GCC=any,
- featuring USES=fortran,
- using Mk/bsd.octave.mk which in turn features USES=fortran, and those
- with USES=compiler specifying one of openmp, nestedfct, c11, c++0x,
c++11-lib, c++11-lang, c++14-lang, c++17-lang, or gcc-c++11-lib.
PR: 222542
|
Thursday, 28 Jun 2018
|
17:39 tcberner
Replace bsd.qt.mk by Uses/qt.mk and Uses/qt-dist.mk
From now on, ports that depend on Qt4 will have to set
USES= qt:4
USE_QT= foo bar
ports depending on Qt5 will use
USES= qt:5
USE_QT= foo bar
PR: 229225
Exp-run by: antoine
Reviewed by: mat
Approved by: portmgr (antoine)
Differential Revision: -https://reviews.freebsd.org/D15540
|
Saturday, 10 Mar 2018
|
17:46 gerald
Bump PORTREVISIONs of all users of math/mpc that we just updated to
version 1.1.0 (via revision 464079).
|
Friday, 23 Feb 2018
|
21:09 rene
Reset vg@'s ports after he resigned.
With hat: portmgr-secretary
|
Sunday, 10 Sep 2017
|
20:55 gerald
Bump PORTREVISION for ports depending on the canonical version of GCC
(via Mk/bsd.default-versions.mk and lang/gcc) which has moved from
GCC 5.4 to GCC 6.4 under most circumstances.
This includes ports
- with USE_GCC=yes or USE_GCC=any,
- with USES=fortran,
- using Mk/bsd.octave.mk which in turn features USES=fortran, and
- with USES=compiler specifying openmp, nestedfct, c++11-lib, c++11-lang,
c++14-lang, c++0x, c11, or gcc-c++11-lib.
PR: 219275
|
Saturday, 26 Aug 2017
|
20:55 rakuco
Revert r447879.
Apparently the build is indeed broken with parallel jobs, even though I wasn't
able to reproduce it in my tests. Checking what's broken would take time and
anyone interested in that should rather try updating the port to 3.6.0.
PR: 219293
Reported by: John Marino <freebsdml@marino.st>
|
Sunday, 13 Aug 2017
|
11:20 rakuco
Drop MAKE_JOBS_UNSAFE.
Tentatively remove it after testing the port with -j2 and -jLOTS_OF_CORES.
PR: 219293
|
11:19 rakuco
Add patch to drop a wrong ';' in an if check.
In addition to fixing an actual bug, this also fixes the build with GCC 6:
/wrkdirs/usr/ports/science/massxpert/work/massxpert-3.4.0/lib/propListHolder.cpp:
In member function 'bool massXpert::PropListHolder::removeProp(const QString&)':
/wrkdirs/usr/ports/science/massxpert/work/massxpert-3.4.0/lib/propListHolder.cpp:216:2:
error: this 'if' clause does not guard... [-Werror=misleading-indentation]
if(m_propList.at(iter)->name() == name);
^~
/wrkdirs/usr/ports/science/massxpert/work/massxpert-3.4.0/lib/propListHolder.cpp:217:2:
note: ...this statement, but the latter is misleadingly indented as if it is
guarded by the 'if'
{
PR: 219293
Approved by: maintainer timeout (vg, 18 days)
MFH: 2017Q3
|
Saturday, 1 Apr 2017
|
15:23 gerald
Bump PORTREVISIONs for ports depending on the canonical version of GCC and
lang/gcc which have moved from GCC 4.9.4 to GCC 5.4 (at least under some
circumstances such as versions of FreeBSD or platforms).
This includes ports
- with USE_GCC=yes or USE_GCC=any,
- with USES=fortran,
- using using Mk/bsd.octave.mk which in turn has USES=fortran, and
- with USES=compiler specifying openmp, nestedfct, c++11-lib, c++14-lang,
c++11-lang, c++0x, c11, or gcc-c++11-lib.
PR: 216707
|
Wednesday, 29 Mar 2017
|
06:50 ashish
- Update devel/libpthread-stubs to 0.4
- Chase libpthread-stubs update, and also switch to BUILD_DEPENDS
from LIB_DEPENDS, as port is now only .pc file
PR: 218015
Submitted by: rezny
|
Sunday, 20 Nov 2016
|
09:38 gerald
Bump PORTREVISIONS for ports depending on the canonical version of GCC and
lang/gcc which have moved from GCC 4.8.5 to GCC 4.9.4 (at least under some
circumstances such as versions of FreeBSD or platforms).
In particular that is ports with USE_GCC=yes, USE_GCC=any, or one of
gcc-c++11-lib, openmp, nestedfct, c++11-lib as well as c++14-lang,
c++11-lang, c++0x, c11 requested via USES=compiler.
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Friday, 1 Apr 2016
|
14:25 mat
Remove ${PORTSDIR}/ from dependencies, categories r, s, t, and u.
With hat: portmgr
Sponsored by: Absolight
|
Friday, 11 Sep 2015
|
09:43 rakuco
Drop USES=iconv.
The port's source does not use iconv anywhere, so remove the unnecessary
dependency from the Makefile.
PR: 202717
Approved by: maintainer timeout (vg, 14 days)
|
Sunday, 22 Mar 2015
|
00:06 marino
science/massxpert: Fix two logical errors (found by gcc5)
There were two boolean logic issues found by gcc5 when compiling
massxpert. One was comparing boolean output to a negative integer
(is always false) and the other applied the "not" operator in the wrong
place. Fix provided per request by maintainer.
PR: 197823
|
Thursday, 25 Dec 2014
|
20:54 bapt
Bump portrevision after png update
|
19:04 antoine
Change libpng15.so to libpng.so in LIB_DEPENDS to prepare the upgrade
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Monday, 30 Jun 2014
|
20:39 vg
- Support staging.
|
Wednesday, 16 Apr 2014
|
18:28 zeising
The FreeBSD x11@ and graphics team proudly presents
a zeising, kwm production, with help from dumbbell, bdrewery:
NEW XORG ON FREEBSD 9-STABLE AND 10-STABLE
This update switches over to use the new xorg stack by default on FreeBSD 9
and 10 stable, on osversions where vt(9) is available.
It is still possible to use the old stack by specifying WITHOUT_NEW_XORG in
/etc/make.conf .
FreeBSD 8-STABLE and released versions of FreeBSD still use
the old version.
A package repository with binary packages for new xorg will
be available soon.
This patch also contains updates of libxcb and related ports, pixman, as well
as some drivers and utilities.
Bump portrevisions for xf86-* ports, as well as virtualbox-ose-additions due
to xserver version change.
Apart from these updates, the way shared libraries are handled has been
changed for all xorg ports, as well as libxml2 and freetype, which means
ltverhack is gone and as a consequence shared libraries have been bumped.
The plan is that this change will make library bumps less likely in the
future.
All affected ports have had their portrevisions bumped as a consequence of
this.
Fix some issues where WITH_NEW_XORG weren't detected properly on CURRENT.
Update instructions, hardware support, and more notes can be found on
https://wiki.freebsd.org/Graphics
Thanks to: all testers, bdrewery and the FreeBSD x11@ team
exp-run by: bdrewery [1]
PR: ports/187602 [1]
Approved by: portmgr (bdrewery), core (jhb)
|
Friday, 20 Sep 2013
|
22:48 bapt
Add NO_STAGE all over the place in preparation for the staging support (cat:
science)
|
Monday, 22 Jul 2013
|
14:34 vg
- Changed my email
- Trim Makefile headers and positions name and surname within
Approved by: eadler, rm (mentors)
|
Saturday, 25 May 2013
|
14:37 zeising
The FreeBSD x11 team proudly presents
an zeising, kwm, miwi, bapt, eadler production:
Xorg 7.7
Starring:
xserver 1.12.4 (new xorg only)
Mesa 8.0.4, including libGL, libGLU and dri (new xorg only)
libX11 1.5.0
libxcb 1.9
libdrm 2.4.42 (new xorg only)
freeglut 2.8.1
Also starring:
Updates to drivers and other libraries and utilities
Additional notes:
Change pkgconf to be a build dependency.
Add a new USE_XORG, xcb, to depend on libxcb and update all ports to use
this.
Trim makefile headers.
Take maintanership of x11/xcb-proto, ok'd by ashish.
If you are running WITH_NEW_XORG=, you need to rebuild all installed
drivers, see UPDATING for more information.
Various fixes to make ports compile.
PR: ports/177942
Exp-run by: miwi
Approved by: portmgr (miwi)
Thanks to all who helped testing!
|
Saturday, 27 Apr 2013
|
18:25 mva
- Convert USE_ICONV=yes to USES=iconv
- Change USE_GNOME=pkgconfig|gnomehack to USES=pathfix|pkgconfig and
USE_GETTEXT=yes to USES=gettext while here
|
Wednesday, 24 Apr 2013
|
07:35 ak
- Convert USE_GETTEXT to USES (part 1)
Approved by: portmgr (bapt)
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Friday, 22 Mar 2013
|
20:06 makc
- convert USE_CMAKE to USES
- while here clean up some ports from CMAKE_VERBOSE, which is intended
for users
Approved by: portmgr (miwi)
|
Saturday, 9 Feb 2013
|
14:02 miwi
- Update to 3.4.0
PR: 175601
Submitted by: maintainer
|
Sunday, 16 Dec 2012
|
20:59 pawel
- Update to version 3.3.0 [1]
- Add missing deps
- Mark MAKE_JOBS_UNSAFE
- tab -> space in WWW: line
PR: ports/174397 [1]
Submitted by: Veniamin Gvozdikov <g.veniamin@googlemail.com> (maintainer)
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Wednesday, 6 Jun 2012
|
06:44 miwi
- Convert USE_QT_VER=4 and QT_COMPONETS to USE_QT4
Review by: bapt, David Naylor (kde team)
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Friday, 1 Jun 2012
|
05:26 dinoex
- update png to 1.5.10
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Monday, 14 Nov 2011
|
03:26 rakuco
Remove CMAKE_USE_PTHREAD from the ports using it.
This setting has not had any effect since r1.13 to bsd.cmake.mk, as it
was only useful when we supported FreeBSD < 7.
Approved by: avilla (mentor), portmgr (miwi)
Feature safe: yes
|
Tuesday, 6 Sep 2011
|
16:03 dhn
- Update to 3.1.0
PR: ports/160515
Submitted by: Veniamin Gvozdikov <g.veniamin@googlemail.com> (maintainer)
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Thursday, 31 Mar 2011
|
06:51 culot
- Update to 2.4.3
- LICENSE added
PR: ports/156059
Submitted by: Gvozdikov Veniamin <g.veniamin AT googlemail.com> (maintainer)
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Thursday, 27 May 2010
|
06:07 wen
- Fix mans
- Remove USE_LDCONFIG
PR: ports/146795
Submitted by: Gvozdikov Veniamin <g.veniamin@googlemail.com> (maintainer)
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Thursday, 20 May 2010
|
09:43 wen
The massXpert project aims at providing (bio)chemists with a software
package allowing the following:
* User-specific atom definitions and polymer chemistry definitions;
* Powerful sequence editing with user-defined glyphs for each monomer
and monomer chemical modification. Multi-region selections;
* Polymer sequence chemical/enzymatic cleavage;
* Intramolecular cross-linking, like disulfide bonds with total resolution
of the peptides generated upon enzymatic cleavage;
* Gas-phase fragmentation of oligomers;
* Mass-to-charge ratio calculations with inline change of ionization agent;
* Calculation of net electrical charge and of isoelectric point (even by
taking into account monomer modifications if polymer is a protein);
* Simulation of isotopic patterns for any chemical formula and z charge;
* A number of plugins allow 1) translation of the sequence from one format
to another (using a dictionary, like between the 1-letter code and the 3-letter
code of proteins) 2) conversion of number format according to any localized
number format 3) sort mass lists.
PR: ports/146564
Submitted by: Gvozdikov Veniamin <g.veniamin@googlemail.com>
|
Number of commits found: 49 |