Number of commits found XX: 18

Mark BROKEN

gfortran9 -I/usr/local/include -ffree-line-length-none
-Wl,-rpath=/usr/local/lib/gcc9 -fopenmp -I ../external_libs/bpdn -I
../external_libs/dftd3 -I ../external_libs/spglib-1.9.9/src/ -I /usr/include  
-I/usr/include -I /include  -c  -o species/atomic.o species/atomic_oct.f90
f951: Warning: Nonexistent include directory
'../external_libs/spglib-1.9.9/src/' [-Wmissing-include-dirs]
f951: Warning: Nonexistent include directory '/include' [-Wmissing-include-dirs]
species/atomic.F90:299:26:

  299 |     type(XC_F90(pointer_t)) :: x_conf, c_conf
      |                          1
Error: Derived type 'xc_f90_pointer_t' at (1) is being used before it is defined
species/atomic.F90:300:26:

  300 |     type(XC_F90(pointer_t)) :: x_info, c_info
      |                          1
Error: Derived type 'xc_f90_pointer_t' at (1) is being used before it is defined

(Only the first 15 lines of the commit message are shown above )

- update libgd to 2.3.0
- new option RAQM
- resurrect deprecated gdlib-config
- bump dependend ports

science/octopus: Update 8.4 -> 9.2

science/octopus: Correct URL

science/octopus: Unbreak by correcting MASTER_SITES: the project has moved to a
new URL

Deprecate ports broken for more than 6 months

Mark a few ports BROKEN (unfetchable)

math/gsl: update to 2.6

- math/p5-Math-GSL does not seem to have any upstream activity to make it work
with this version -> mark it broken
  - this also breaks the two consumers of this port

- biology/gemma: has a conflict with cblas, and is makred broken.

PR:		241363
Exp-run by:	antoine

Bump PORTREVISION for ports depending on the canonical version of GCC
as defined in Mk/bsd.default-versions.mk which has moved from GCC 8.3
to GCC 9.1 under most circumstances now after revision 507371.

This includes ports
 - with USE_GCC=yes or USE_GCC=any,
 - with USES=fortran,
 - using Mk/bsd.octave.mk which in turn features USES=fortran, and
 - with USES=compiler specifying openmp, nestedfct, c11, c++0x, c++11-lang,
   c++11-lib, c++14-lang, c++17-lang, or gcc-c++11-lib
plus, everything INDEX-11 shows with a dependency on lang/gcc9 now.

PR:		238330

Clean up LIB_DEPENDS

Related to revision 499061 bump ports with USES=fortran to have them
benefit from the improved situation where libgcc_s is only used when
absolutely necessary.

Suggested by:	tijl

science/octopus: Update 8.3 -> 8.4

science/octopus: Unbundle spglib; Add OPENMP option that makes it parallelized
by default

science/octopus: Update 8.2 -> 8.3

Reported by:	repology

Bump PORTREVISION for ports depending on the canonical version of GCC
defined via Mk/bsd.default-versions.mk which has moved from GCC 7.4 t
GCC 8.2 under most circumstances.

This includes ports
 - with USE_GCC=yes or USE_GCC=any,
 - with USES=fortran,
 - using Mk/bsd.octave.mk which in turn features USES=fortran, and
 - with USES=compiler specifying openmp, nestedfct, c11, c++0x, c++11-lang,
   c++11-lib, c++14-lang, c++17-lang, or gcc-c++11-lib
plus, as a double check, everything INDEX-11 showed depending on lang/gcc7.

PR:		231590

science/libxc: Update 3.0.0 -> 4.2.3

PR:		231648
Approved by:	dieterich@ogolem.org (maintainer's timeout; 27 days)

science/dftbplus science/mbdyn science/octopus: Change from math/arpack to
math/arpack-ng

New port: science/octopus: Scientific program aimed at the ab initio virtual
experimentation

Number of commits found XX: 18

13 vulnerabilities affecting 77 ports have been reported in the past 14 days

^* - modified, not new

All vulnerabilities

Last updated:
2020-08-04 10:33:08