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Why was the website so slow for so long?

The cause of the slowdown was a change to the ZFS dataset. In conjunction with the database server, very little caching was being done. This combination resulted in increased disk I/O as the system churned through the database. Details in the blog post which outlines the various things which changed. Many graphs.

non port: science/py-mlpy/Makefile
SVNWeb

Number of commits found XX: 31

Sun, 23 Feb 2020
[ 15:25 antoine ] Original commit   Revision:526925
526925 archivers/py-backports.lzma/Makefile
526925 archivers/py-bup/Makefile
526925 archivers/py-librtfcomp/Makefile
526925 audio/blop-lv2/Makefile
526925 audio/bs2b-lv2/Makefile
526925 audio/guitarix-lv2/Makefile
526925 audio/py-cddb/Makefile
526925 audio/py-gmusicproxy/Makefile
526925 audio/py-hsaudiotag/Makefile
526925 audio/py-openal/Makefile

(Only the first 10 of 257 ports in this commit are shown above. View all ports for this commit)
Deprecate a few ports

With hat:	portmgr
Fri, 25 Oct 2019
[ 23:41 tcberner ] Original commit   Revision:515671
515671 astro/gnuastro/Makefile
515671 astro/siril/Makefile
515671 audio/p5-Audio/Makefile
515671 audio/snd/Makefile
515671 benchmarks/flowgrind/Makefile
515671 biology/bcftools/Makefile
515671 biology/gemma/Makefile
515671 biology/viennarna/Makefile
515671 comms/gnuradio/Makefile
515671 editors/calligra/Makefile

(Only the first 10 of 64 ports in this commit are shown above. View all ports for this commit)
math/gsl: update to 2.6

- math/p5-Math-GSL does not seem to have any upstream activity to make it work
with this version -> mark it broken
  - this also breaks the two consumers of this port

- biology/gemma: has a conflict with cblas, and is makred broken.

PR:		241363
Exp-run by:	antoine
Fri, 26 Jul 2019
[ 20:46 gerald ] Original commit   Revision:507372
507372 Mk/bsd.ruby.mk
507372 accessibility/atkmm/Makefile
507372 accessibility/kmag/Makefile
507372 accessibility/kmousetool/Makefile
507372 accessibility/kmouth/Makefile
507372 accessibility/libqaccessibilityclient/Makefile
507372 accessibility/qt5-speech/Makefile
507372 archivers/R-cran-zip/Makefile
507372 archivers/ark/Makefile
507372 archivers/brotli/Makefile

(Only the first 10 of 3853 ports in this commit are shown above. View all ports for this commit)
Bump PORTREVISION for ports depending on the canonical version of GCC
as defined in Mk/bsd.default-versions.mk which has moved from GCC 8.3
to GCC 9.1 under most circumstances now after revision 507371.

This includes ports
 - with USE_GCC=yes or USE_GCC=any,
 - with USES=fortran,
 - using Mk/bsd.octave.mk which in turn features USES=fortran, and
 - with USES=compiler specifying openmp, nestedfct, c11, c++0x, c++11-lang,
   c++11-lib, c++14-lang, c++17-lang, or gcc-c++11-lib
plus, everything INDEX-11 shows with a dependency on lang/gcc9 now.

PR:		238330
Fri, 5 Apr 2019
[ 16:54 amdmi3 ] Original commit   Revision:497970
497970 science/py-mlpy/Makefile
- Document incompatibility with python 3.7+

Approved by:	portmgr blanket
Wed, 12 Dec 2018
[ 01:35 gerald ] Original commit   Revision:487272
487272 Mk/bsd.ruby.mk
487272 accessibility/atkmm/Makefile
487272 accessibility/kmag/Makefile
487272 accessibility/kmousetool/Makefile
487272 accessibility/kmouth/Makefile
487272 accessibility/qt5-speech/Makefile
487272 archivers/R-cran-zip/Makefile
487272 archivers/ark/Makefile
487272 archivers/brotli/Makefile
487272 archivers/c-blosc/Makefile

(Only the first 10 of 3168 ports in this commit are shown above. View all ports for this commit)
Bump PORTREVISION for ports depending on the canonical version of GCC
defined via Mk/bsd.default-versions.mk which has moved from GCC 7.4 t
GCC 8.2 under most circumstances.

This includes ports
 - with USE_GCC=yes or USE_GCC=any,
 - with USES=fortran,
 - using Mk/bsd.octave.mk which in turn features USES=fortran, and
 - with USES=compiler specifying openmp, nestedfct, c11, c++0x, c++11-lang,
   c++11-lib, c++14-lang, c++17-lang, or gcc-c++11-lib
plus, as a double check, everything INDEX-11 showed depending on lang/gcc7.

PR:		231590
Sat, 23 Jun 2018
[ 08:27 tcberner ] Original commit   Revision:473116
473116 astro/siril/Makefile
473116 audio/snd/Makefile
473116 benchmarks/flowgrind/Makefile
473116 biology/bcftools/Makefile
473116 comms/gnuradio/Makefile
473116 graphics/amide/Makefile
473116 graphics/enblend/Makefile
473116 graphics/inkscape/Makefile
473116 graphics/krita/Makefile
473116 graphics/luminance-qt5/Makefile

(Only the first 10 of 47 ports in this commit are shown above. View all ports for this commit)
Update math/gsl to 2.5

PR:		229067
Sat, 10 Mar 2018
[ 17:46 gerald ] Original commit   Revision:464084
464084 archivers/pxz/Makefile
464084 archivers/zip-ada/Makefile
464084 astro/R-cran-maptools/Makefile
464084 astro/astrometry/Makefile
464084 astro/kstars-kde4/Makefile
464084 astro/nightfall/Makefile
464084 astro/py-RO/Makefile
464084 astro/py-aipy/Makefile
464084 astro/py-astLib/Makefile
464084 astro/py-astropy/Makefile

(Only the first 10 of 1104 ports in this commit are shown above. View all ports for this commit)
Bump PORTREVISIONs of all users of math/mpc that we just updated to
version 1.1.0 (via revision 464079).
Thu, 30 Nov 2017
[ 15:50 mat ] Original commit   Revision:455210
455210 CHANGES
455210 MOVED
455210 Mk/Uses/gnome.mk
455210 Mk/Uses/pyqt.mk
455210 Mk/Uses/python.mk
455210 UPDATING
455210 accessibility/Makefile
455210 accessibility/accerciser/Makefile
455210 accessibility/caribou/Makefile
455210 accessibility/orca/Makefile

(Only the first 10 of 2423 ports in this commit are shown above. View all ports for this commit)
Convert Python ports to FLAVORS.

  Ports using USE_PYTHON=distutils are now flavored.  They will
  automatically get flavors (py27, py34, py35, py36) depending on what
  versions they support.

  There is also a USE_PYTHON=flavors for ports that do not use distutils
  but need FLAVORS to be set.  A USE_PYTHON=noflavors can be set if
  using distutils but flavors are not wanted.

  A new USE_PYTHON=optsuffix that will add PYTHON_PKGNAMESUFFIX has been
  added to cope with Python ports that did not have the Python
  PKGNAMEPREFIX but are flavored.

  USES=python now also exports a PY_FLAVOR variable that contains the
(Only the first 15 lines of the commit message are shown above View all of this commit message)
Mon, 3 Jul 2017
[ 20:38 tcberner ] Original commit   Revision:444988
444988 audio/snd/Makefile
444988 benchmarks/flowgrind/Makefile
444988 biology/bcftools/Makefile
444988 comms/gnuradio/Makefile
444988 editors/calligra/Makefile
444988 graphics/amide/Makefile
444988 graphics/enblend/Makefile
444988 graphics/inkscape/Makefile
444988 graphics/krita/Makefile
444988 graphics/luminance-qt5/Makefile

(Only the first 10 of 42 ports in this commit are shown above. View all ports for this commit)
Update math/gsl to 2.4

Exp-Run by:	antoine
PR:		220408
Tue, 2 May 2017
[ 05:26 tcberner ] Original commit   Revision:439928
439928 audio/snd/Makefile
439928 benchmarks/flowgrind/Makefile
439928 biology/bcftools/Makefile
439928 comms/gnuradio/Makefile
439928 editors/calligra/Makefile
439928 graphics/amide/Makefile
439928 graphics/amide/files/patch-gsl_2x
439928 graphics/enblend/Makefile
439928 graphics/inkscape/Makefile
439928 graphics/luminance-qt5/Makefile

(Only the first 10 of 46 ports in this commit are shown above. View all ports for this commit)
Update math/gsl to 2.3

This release introduces some new features and fixes several bugs:
	http://savannah.gnu.org/forum/forum.php?forum_id=8751

* update to 2.3 and take maintainership
* update math/py-gsl to 2.2.0 for gsl2 support
* update math/rubygem-rb-gsl to 2.1.0.2 for gsl2 support

PR:		218952
Exp-run by:	antoine
Reviewed by:	mat, rakuco
Approved by:	rakuco (mentor)
Differential Revision:	https://reviews.freebsd.org/D10522
Fri, 1 Apr 2016
[ 14:25 mat ] Original commit   Revision:412349
412349 russian/bugzilla44/Makefile
412349 russian/emkatic/Makefile
412349 russian/gd/Makefile
412349 russian/p5-Convert-Cyrillic/Makefile
412349 russian/p5-Lingua-DetectCyrillic/Makefile
412349 russian/p5-Text-Hyphen-RU/Makefile
412349 russian/p5-XML-Parser-encodings/Makefile
412349 russian/rubygem-russian/Makefile
412349 science/InsightToolkit/Makefile
412349 science/R-cran-DCluster/Makefile

(Only the first 10 of 2099 ports in this commit are shown above. View all ports for this commit)
Remove ${PORTSDIR}/ from dependencies, categories r, s, t, and u.

With hat:	portmgr
Sponsored by:	Absolight
Fri, 23 Jan 2015
[ 15:21 antoine ] Original commit   Revision:377743
377743 astro/astrometry/Makefile
377743 graphics/mypaint/Makefile
377743 math/rpy/Makefile
377743 math/rpy2/Makefile
377743 science/py-hcluster/Makefile
377743 science/py-mlpy/Makefile
377743 science/pycdf/Makefile
Canonicalize some dependencies on numpy
Fri, 24 Oct 2014
[ 16:50 mva ] Original commit   Revision:371453
371453 science/avogadro/Makefile
371453 science/brian/Makefile
371453 science/gramps/Makefile
371453 science/libsvm/Makefile
371453 science/mei/Makefile
371453 science/openbabel/Makefile
371453 science/py-DendroPy/Makefile
371453 science/py-coards/Makefile
371453 science/py-h5py/Makefile
371453 science/py-hcluster/Makefile

(Only the first 10 of 118 ports in this commit are shown above. View all ports for this commit)
- Convert ports of science/ and security to new USES=python

Approved by:	portmgr (implicit)
Wed, 10 Sep 2014
[ 20:50 gerald ] Original commit   Revision:367888
367888 accessibility/accerciser/Makefile
367888 accessibility/jovie/Makefile
367888 accessibility/kaccessible/Makefile
367888 accessibility/kdeaccessibility4/Makefile
367888 accessibility/kmag/Makefile
367888 accessibility/kmousetool/Makefile
367888 accessibility/kmouth/Makefile
367888 accessibility/orca/Makefile
367888 arabic/kde4-l10n/Makefile
367888 arabic/libreoffice/Makefile

(Only the first 10 of 3171 ports in this commit are shown above. View all ports for this commit)
Update the default version of GCC in the Ports Collection from GCC 4.7.4
to GCC 4.8.3.

Part II, Bump PORTREVISIONs.

PR:		192025
Tested by:	antoine (-exp runs)
Approved by:	portmgr (implicit)
Sun, 17 Aug 2014
[ 13:09 tijl ] Original commit   Revision:365182
365182 audio/snd/Makefile
365182 benchmarks/flowgrind/Makefile
365182 benchmarks/sipp/Makefile
365182 comms/gnuradio/Makefile
365182 editors/calligra/Makefile
365182 graphics/amide/Makefile
365182 graphics/enblend/Makefile
365182 graphics/inkscape/Makefile
365182 graphics/luminance-qt5/Makefile
365182 graphics/luminance/Makefile

(Only the first 10 of 45 ports in this commit are shown above. View all ports for this commit)
math/gsl:
- Add USES=libtool and bump dependent ports
- Add USES=pathfix and INSTALL_TARGET=install-strip

Approved by:	portmgr (implicit, bump unstage port)
Sat, 31 May 2014
[ 13:56 wen ] Original commit   Revision:355973
355973 science/py-mlpy/Makefile
355973 science/py-mlpy/distinfo
355973 science/py-mlpy/files/patch-mlpy-cwt-cwb.c
355973 science/py-mlpy/files/patch-setup.py
355973 science/py-mlpy/pkg-descr
355973 science/py-mlpy/pkg-plist
- Added STAGE support
- Update to 3.5.0

PR:		190314
Submitted by:	Muhammad Moinur Rahman <5u623l20@gmail.com>
Mon, 10 Mar 2014
[ 20:55 gerald ] Original commit   Revision:347809
347809 archivers/hs-tar/Makefile
347809 archivers/hs-zip-archive/Makefile
347809 archivers/hs-zlib-bindings/Makefile
347809 archivers/hs-zlib-conduit/Makefile
347809 archivers/hs-zlib-enum/Makefile
347809 archivers/hs-zlib/Makefile
347809 astro/R-cran-maptools/Makefile
347809 astro/astrometry/Makefile
347809 astro/nightfall/Makefile
347809 astro/py-RO/Makefile

(Only the first 10 of 1081 ports in this commit are shown above. View all ports for this commit)
Update the default version of GCC used in the Ports Collection from
GCC 4.6.4 to GCC 4.7.3.  This entails updating the lang/gcc port as
well as changing the default in Mk/bsd.default-versions.mk.

Part II, Bump PORTREVISIONs.

PR:		182136
Supported by:	Christoph Moench-Tegeder <cmt@burggraben.net> (fixing many ports)
Tested by:	bdrewery (two -exp runs)
Sat, 26 Oct 2013
[ 00:52 gerald ] Original commit   Revision:331644
331644 archivers/hs-tar/Makefile
331644 archivers/hs-zip-archive/Makefile
331644 archivers/hs-zlib-bindings/Makefile
331644 archivers/hs-zlib-conduit/Makefile
331644 archivers/hs-zlib-enum/Makefile
331644 archivers/hs-zlib/Makefile
331644 astro/R-cran-maptools/Makefile
331644 astro/astrometry/Makefile
331644 astro/nightfall/Makefile
331644 astro/py-RO/Makefile

(Only the first 10 of 1147 ports in this commit are shown above. View all ports for this commit)
Update to libmpc version 1.0.1 which brings the following fixes:

 - Switched to automake 1.11.6, see CVE-2012-3386.
 - #14669: Fixed extraction of CC from gmp.h.
 - Fixed case of intermediate zero real or imaginary part in mpc_fma,
   found by hydra with GMP_CHECK_RANDOMIZE=1346362345.

This is on top of the following changes from version 1.0

 - Licence change towards LGPLv3+ for the code and GFDLv1.3+ (with no
   invariant sections) for the documentation.
 - 100% of all lines are covered by tests
 - Renamed functions
   . mpc_mul_2exp to mpc_mul_2ui
   . mpc_div_2exp to mpc_div_2ui
(Only the first 15 lines of the commit message are shown above View all of this commit message)
Fri, 20 Sep 2013
[ 22:48 bapt ] Original commit   Revision:327767
327767 science/2d-rewriter/Makefile
327767 science/2dhf/Makefile
327767 science/InsightToolkit/Makefile
327767 science/R-cran-AMORE/Makefile
327767 science/R-cran-DCluster/Makefile
327767 science/R-cran-Epi/Makefile
327767 science/R-cran-bayesm/Makefile
327767 science/R-cran-e1071/Makefile
327767 science/R-cran-eco/Makefile
327767 science/R-cran-epicalc/Makefile

(Only the first 10 of 185 ports in this commit are shown above. View all ports for this commit)
Add NO_STAGE all over the place in preparation for the staging support (cat:
science)
Mon, 26 Aug 2013
[ 16:06 bf ] Original commit   Revision:325401
325401 audio/snd/Makefile
325401 benchmarks/flowgrind/Makefile
325401 benchmarks/sipp/Makefile
325401 biology/adun/Makefile
325401 comms/gnuradio/Makefile
325401 editors/calligra/Makefile
325401 graphics/amide/Makefile
325401 graphics/enblend/Makefile
325401 graphics/inkscape/Makefile
325401 graphics/luminance/Makefile

(Only the first 10 of 40 ports in this commit are shown above. View all ports for this commit)
Update math/gsl to 1.16 and adjust some dependent ports
Sat, 21 Jan 2012
[ 17:40 eadler ] Original commit 
1.13 astro/p5-Astro-Catalog/Makefile
1.11 astro/p5-Astro-SunTime/Makefile
1.7 astro/py-RO/Makefile
1.10 astro/py-aipy/Makefile
1.3 astro/py-pyfits/Makefile
1.8 audio/calf/Makefile
1.30 audio/gnupod/Makefile
1.3 audio/jack_mixer/Makefile
1.61 audio/muine/Makefile
1.8 audio/p5-Audio-Scrobbler/Makefile

(Only the first 10 of 1326 ports in this commit are shown above. View all ports for this commit)
At the moment 1385 ports use BUILD_DEPENDS= ${RUN_DEPENDS} and 450
ports use BUILD_DEPENDS:= ${RUN_DEPENDS}. This patch fixes ports that are
currently broken. This is a temporary measure until we organically stop using
:= or someone(s) spend a lot of time changing all the ports over.

Explicit duplication > := > = and this just moves ports one step to the left

Approved by:    portmgr
Fri, 23 Sep 2011
[ 22:26 amdmi3 ] Original commit 
1.11 Mk/bsd.cmake.mk
1.65 Mk/bsd.database.mk
1.5 Mk/bsd.efl.mk
1.66 Mk/bsd.gnustep.mk
1.82 Mk/bsd.kde.mk
1.2 Mk/bsd.ncurses.mk
1.46 Mk/bsd.openssl.mk
1.696 Mk/bsd.port.mk
1.28 Mk/bsd.qt.mk
1.17 accessibility/accerciser/Makefile

(Only the first 10 of 2369 ports in this commit are shown above. View all ports for this commit)
- Add LDFLAGS to CONFIGURE_ENV and MAKE_ENV (as it was done with LDFLAGS)
- Fix all ports that add {CPP,LD}FLAGS to *_ENV to modify flags instead

PR:             157936
Submitted by:   myself
Exp-runs by:    pav
Approved by:    pav
Mon, 9 May 2011
[ 16:42 bf ] Original commit 
1.41 astro/orsa/Makefile
1.12 audio/p5-Audio/Makefile
1.103 audio/snd/Makefile
1.36 benchmarks/sipp/Makefile
1.33 biology/adun/Makefile
1.29 comms/gnuradio/Makefile
1.145 editors/koffice-kde4/Makefile
1.2 graphics/amide/Makefile
1.58 graphics/gscan2pdf/Makefile
1.71 graphics/inkscape/Makefile

(Only the first 10 of 45 ports in this commit are shown above. View all ports for this commit)
Update math/gsl to 1.15, and adjust PORTREVISION
and LIB_DEPENDS of dependent ports
Thu, 23 Dec 2010
[ 08:22 wen ] Original commit 
1.8 science/py-mlpy/Makefile
1.6 science/py-mlpy/distinfo
1.1 science/py-mlpy/files/patch-setup.py
1.5 science/py-mlpy/pkg-plist
- Update to 2.2.2
Tue, 21 Dec 2010
[ 01:22 wen ] Original commit 
1.7 science/py-mlpy/Makefile
1.5 science/py-mlpy/distinfo
1.1 science/py-mlpy/files/patch-mlpy-cwt-cwb.c
- Fix run error because of lacking cpow() function in FreeBSD.
- Remove MD5

PR:             ports/153299
Submitted by:   Kawaguti Ginga <ginga-freebsd@ginganet.org>
Thu, 28 Oct 2010
[ 12:09 wen ] Original commit 
1.6 science/py-mlpy/Makefile
1.4 science/py-mlpy/distinfo
1.4 science/py-mlpy/pkg-plist
- Update to 2.2.1
Mon, 29 Mar 2010
[ 01:12 wen ] Original commit 
1.35 astro/orsa/Makefile
1.91 audio/snd/Makefile
1.33 benchmarks/sipp/Makefile
1.28 biology/adun/Makefile
1.127 editors/koffice-kde4/Makefile
1.60 graphics/inkscape/Makefile
1.25 graphics/nip2/Makefile
1.7 graphics/ocropus/Makefile
1.37 graphics/qgis/Makefile
1.98 mail/bogofilter/Makefile

(Only the first 10 of 28 ports in this commit are shown above. View all ports for this commit)
- Bump PORTREVISION to chase the update of math/gsl
Tue, 1 Dec 2009
[ 20:33 makc ] Original commit 
1.30 astro/orsa/Makefile
1.11 audio/p5-Audio/Makefile
1.85 audio/snd/Makefile
1.31 benchmarks/sipp/Makefile
1.27 biology/adun/Makefile
1.2 cad/gmsh-occ/Makefile
1.79 cad/gmsh/Makefile
1.18 deskutils/kdeplasma-addons/Makefile
1.16 devel/nx/Makefile
1.72 french/aster/Makefile

(Only the first 10 of 47 ports in this commit are shown above. View all ports for this commit)
Chase math/gsl update,
bump PORTREVISION
[ 13:05 wen ] Original commit 
1.3 science/py-mlpy/Makefile
1.3 science/py-mlpy/distinfo
1.3 science/py-mlpy/pkg-plist
- Update to 2.1.0
- Update my mail address to FreeBSD
Fri, 5 Jun 2009
[ 21:59 miwi ] Original commit 
1.2 science/py-mlpy/Makefile
1.2 science/py-mlpy/distinfo
1.2 science/py-mlpy/pkg-plist
- Update to 2.0.3

PR:             135210
Submitted by:   Wen Heping <wenheping@gmail.com> (maintainer)
Thu, 23 Apr 2009
[ 17:02 miwi ] Original commit 
1.143 science/Makefile
1.1 science/py-mlpy/Makefile
1.1 science/py-mlpy/distinfo
1.1 science/py-mlpy/pkg-descr
1.1 science/py-mlpy/pkg-plist
Machine Learning PY (mlpy) is a high-performance Python package for
predictive modeling. It makes extensive use of numpy (http://scipy.org)
to provide fast N-dimensional array manipulation and easy integration of
C code. mlpy provides high level procedures that support, with few lines
of code, the design of rich Data Analysis Protocols (DAPs) for
preprocessing, clustering, predictive classification and feature
selection. Methods are available for feature weighting and ranking, data
resampling, error evaluation and experiment landscaping.The package
includes tools to measure stability in sets of ranked feature lists.

WWW:    http://mlpy.fbk.eu/

PR:             ports/133932
Submitted by:   Wen Heping <wenheping at gmail.com>

Number of commits found XX: 31

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