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Number of commits: 1899 (showing only 100 on this page) 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 10 | 11  »  [19]
Sun, 23 Sep 2018
[ 22:22 yuri ] Original commit 
amass 2.7.0_1 dns files touched by this commit In-depth DNS enumeration
dns/amass: Correction: the revious commit didn't really update the version
[ 22:14 yuri ] Original commit 
amass 2.7.0 dns files touched by this commit In-depth DNS enumeration
dns/amass: Update 2.6.0.11 -> 2.7.0

Reported by:	portscout
[ 21:43 yuri ] Original commit 
pyobd 0.9.3 misc new! files touched by this commit OBD-II compliant car diagnostic tool
New port: misc/pyobd: OBD-II compliant car diagnostic tool
[ 20:09 yuri ] Original commit 
py-CyLP 0.7.2.30 math new! files touched by this commit Python interface to CLP, CBC, and CGL to solve LPs and MIPs
math/py-CyLP: Correct PORTNAME.
[ 20:02 yuri ] Original commit 
py-CyLP 0.7.2.30 math new! files touched by this commit Python interface to CLP, CBC, and CGL to solve LPs and MIPs
New port: math/py-CyLP: Python interface to CLP, CBC, and CGL to solve LPs and
MIPs
[ 19:16 yuri ] Original commit 
py-cyipopt 0.1.8 math files touched by this commit Cython interface for the interior point optimizer IPOPT
math/py-cyipopt: Update 0.1.7 -> 0.1.8

Reported by:	portscout
[ 18:48 yuri ] Original commit 
hypre 2.11.2_4 science files touched by this commit Scalable Linear Solvers and Multigrid Methods
science/hypre: Change from net/mpich2 to net/mpich

Reset maintainer on request of the mantainer (Pedro F. Giffuni).

PR:		231636
Approved by:	pfg (maintainer)
[ 08:43 yuri ] Original commit 
elk 5.2.14 science new! files touched by this commit All-electron full-potential linearised augmented-planewave code
New port: science/elk: All-electron full-potential linearised
augmented-planewave code
[ 00:25 yuri ] Original commit 
cp2k 6.1_2 science files touched by this commit Quantum chemistry and solid state physics software package
science/cp2k: Change from net/mpich2 -> net/mpich
[ 00:10 yuri ] Original commit 
rhvoice-dictionary g20180922 audio new! files touched by this commit Russian dictionary for RHVoice to improve the tone of speech
New port: audio/rhvoice-dictionary: Russian dictionary for RHVoice to improve
the tone of speech
Sat, 22 Sep 2018
[ 21:09 yuri ] Original commit 
rhvoice 0.7.1.4_2 audio files touched by this commit Speech synthesizer for English, Russian, Georgian, and other languages
audio/rhvoice: Add audio backend options

Only one backend seems to work at a time, therefore a RADIO section.
[ 18:43 yuri ] Original commit 
SoPlex 4.0.0 math files touched by this commit Optimization package for solving linear programming problems (LPs)
math/SoPlex: fix build on GCC-based architectures

Add USES=compiler:c++11-lang

PR:		231598
Submitted by:	Piotr Kubaj <pkubaj@anongoth.pl>
[ 18:00 yuri ] Original commit 
imb 3.0_14 benchmarks files touched by this commit Intel MPI Benchmark
mdtest 1.9.3_9 benchmarks files touched by this commit Filesystem metadata benchmark utility
phyml 3.3.20180621_1,1 biology files touched by this commit Simple, fast, and accurate algorithm to estimate large phylogenies
parmetis 4.0.3_2 math files touched by this commit Package for parallel (MPI) unstructured graph partitioning
Change 4 ports from net/mpich2 to net/mpich

mpich2 is the obsolete version 2.x, mpich is at the current version 3.x

Ports:
biology/phyml benchmarks/mdtest benchmarks/imb math/parmetis
[ 17:40 yuri ] Original commit 
elmerfem 8.3.20170524_2 cad files touched by this commit ELMER FEM package
blocksolve95 3.0_22 math files touched by this commit Software for the efficient solution of large, sparse linear systems
petiga g20180518_3 math files touched by this commit Framework for High Performance Isogeometric Analysis
py-petsc4py 3.9.1_1 math files touched by this commit PETSc for Python
py-slepc4py 3.9.0_2 math files touched by this commit SLEPc for Python
slepc 3.9.2_2 math files touched by this commit Scalable Library for Eigenvalue Problem Computations
spooles 2.2_14 math files touched by this commit SParse Object Oriented Linear Equations Solver
sundials 3.1.2_1 math files touched by this commit SUite of Nonlinear and DIfferential/ALgebraic Equation Solvers
PETSc 3.9.4_1 science files touched by this commit Suite of data structures and routines from Argonne National Laboratory
triqs 2.0_4 science files touched by this commit Toolbox for Research on Interacting Quantum Systems
Change 10 ports from net/mpich2 to net/mpich

mpich2 is the obsolete version 2.x, mpich is at the current version 3.x

science/triqs science/PETSc math/py-slepc4py math/slepc math/py-petsc4py
math/petiga math/sundials cad/elmerfem math/blocksolve95 math/spooles
[ 17:37 yuri ] Original commit 
petiga g20180518_2 math files touched by this commit Framework for High Performance Isogeometric Analysis
math/petiga: Add the xplanation to pkg-descr
[ 16:36 yuri ] Original commit 
ga 5.7_3 devel files touched by this commit Partitioned Global Address Space (PGAS) library for distributed arrays
arpack-ng-mpich 3.5.0_2 math files touched by this commit Revised Argand library for solving large-scale eigenvalue problems with MPI support
elpa 2018.05.001_1 math files touched by this commit Eigenvalue soLver for Petaflop Applications
pari 2.11.0_1,2 math files touched by this commit Mathematics library and advanced calculator package
scalapack 2.0.2_15 math files touched by this commit The ScaLAPACK Scalable LAPACK library
charm 6.8.2_1 net files touched by this commit Message-passing parallel language and runtime system
dftbplus 18.2_2 science files touched by this commit DFTB+: Package for performing fast atomistic simulations
fleur 0.27.3_3 science files touched by this commit FLAPW code for atomic computations in quantum chemistry and physics
gromacs 2018.3_1 science files touched by this commit Compute molecular dynamics
jdftx 1.4.2.74_1 science files touched by this commit Software for joint density functional theory in chemistry

(Only the first 10 of 20 ports in this commit are shown above. View all ports for this commit)
Change 20 ports from net/mpich2 to net/mpich

mpich2 is the obsolete version 2.x, mpich is at the current version 3.x

Ports:
math/scalapack science/nwchem science/quantum-espresso science/qmcpack
science/madness
science/qbox science/openmx science/jdftx science/fleur science/libgridxc
science/mdynamix science/lm science/dftbplus science/py-gpaw devel/ga
math/elpa net/charm science/gromacs math/pari math/arpack-ng-mpich
[ 16:06 yuri ] Original commit 
tor-devel 0.3.5.2_1 security files touched by this commit Anonymizing overlay network for TCP
security/tor-devel: Remove the TOR2WEB option because it has been discontinued
by the upsteam
[ 06:27 yuri ] Original commit 
spin 6.4.8 devel files touched by this commit On-the-fly verification system for asynchronous concurrent systems
devel/spin: Unbreak: the offending patch was obviously only patching comments
[ 06:25 yuri ] Original commit 
py-PyFR 1.7.6_2 science new! files touched by this commit Framework for solving advection-diffusion type problems
science/py-PyFR: Update dependencies: move one under the option option, add
another one
[ 05:37 yuri ] Original commit 
tor-devel 0.3.5.2 security files touched by this commit Anonymizing overlay network for TCP
security/tor-devel: Replace --with-tcmalloc with --with-malloc=tcmalloc

PR:		231546
Reported by:	Vinicius Zavam <egypcio@googlemail.com>
[ 01:41 yuri ] Original commit 
vitables 3.0.0.55 devel new! files touched by this commit Viewer and editor of files in both PyTables format and HDF5 format
New port: devel/vitables: Viewer and editor of files in both PyTables format and
HDF5 format
Fri, 21 Sep 2018
[ 23:33 yuri ] Original commit 
py-tables 3.4.4_2 devel files touched by this commit Hierarchical database for Python
devel/py-tables: Add CONFLICTS_BUILD statement.
[ 20:33 yuri ] Original commit 
py-PyFR 1.7.6_1 science new! files touched by this commit Framework for solving advection-diffusion type problems
science/py-PyFR: Fix the OpenMP computation mode by adding -I and -L flags to
the compiler command.

Also fix license.
[ 20:08 yuri ] Original commit 
xmpp-client 20170324_1 net-im files touched by this commit XMPP client with OTR support
net-im/xmpp-client: Remove dependency on packaged Go libs

Also add LICENSE_FILE.

PR:		229989
Submitted by:	Dmitri Goutnik <dg@syrec.org>
Approved by:	cs (maintainer's timeout; 59 days)
[ 19:40 yuri ] Original commit 
py-pygslodeiv2 0.9.1 math new! files touched by this commit Python binding for odeiv2 in GNU Scientific Library (GSL)
math/py-pygslodeiv2: Add tests
[ 19:30 yuri ] Original commit 
tex-formats 20150521_2 print files touched by this commit Formats for basic TeX engines and the 'latex' command
print/tex-formats: Add to description that it provides the 'latex' command

Otherwise, 'pkg search latex' doesn't even return tex-formats, which can make
finding what package installs 'latex' difficult.

Approved by:	portmgr blanket (usability fix that does not result in a change in
contents of the resulting package)
[ 19:16 yuri ] Original commit 
ipfs-go 0.4.17_1 sysutils files touched by this commit IPFS implementation in Go
sysutils/ipfs-go: Switch to upstream-provided source tarball

Since v0.4.17, go-ipfs started to provide full source tarball [1]
which includes all dependencies required for build. Switch port
to use it instead of LOCAL/yuri/ipfs-go-gx-*.tar.xz

[1]
https://github.com/ipfs/go-ipfs/releases/download/v0.4.17/go-ipfs-source.tar.gz

PR:		231107
Submitted by:	Dmitri Goutnik <dg@syrec.org>
Approved by:	jhixson (maintainer's timeout; 19 days)
[ 19:04 yuri ] Original commit 
kurly 1.2.2 www files touched by this commit Alternative implementation of curl written in Golang
www/kurly: Update 1.2.1 -> 1.2.2

Upstream migrated to Gitlab [1], so switch to that

[1]
https://github.com/davidjpeacock/kurly#2018-06-12---the-kurly-project-has-moved-home

PR:		230150
Submitted by:	Dmitri Goutnik <dg@syrec.org>
Approved by:	seanc (maintainer's timeout; 52 days)
[ 18:57 yuri ] Original commit 
liteide 34.2 devel files touched by this commit Simple, open source, cross-platform Go IDE
devel/liteide: Update 34.1 -> 34.2

PR:		231556
Submitted by:	Dmitri Goutnik <dg@syrec.org> (maintainer)
[ 17:59 yuri ] Original commit 
py-chempy 0.7.3 science new! files touched by this commit Package useful for solving problems in chemistry
science/py-chempy: python2 is deprecated for this version of chempy.
[ 17:22 yuri ] Original commit 
tor-devel 0.3.5.2 security files touched by this commit Anonymizing overlay network for TCP
security/tor-devel: Update 0.3.5.1 -> 0.3.5.2

Reported by:	upstream notification
[ 16:43 yuri ] Original commit 
py-pyodesys 0.12.3_1 math files touched by this commit Straightforward numerical integration of ODE systems from Python
math/py-pyodesys: Add tests; Add EXTRAS option for extra-dependencies
[ 16:24 yuri ] Original commit 
chirp 0.4.1.2018.09.06 comms files touched by this commit Free, open-source tool for programming your amateur radio
comms/chirp: 0.4.1.2017.02.22 -> 0.4.1.2018.09.06

Differential Revision:	D17272
[ 15:11 yuri ] Original commit 
py-fastdtw 0.3.2 math new! files touched by this commit Dynamic Time Warping (DTW) algorithm with an O(N) complexity
math/py-fastdtw: Fix license
[ 08:25 yuri ] Original commit 
py-fastdtw 0.3.2 math new! files touched by this commit Dynamic Time Warping (DTW) algorithm with an O(N) complexity
New port: math/py-fastdtw: Dynamic Time Warping (DTW) algorithm with an O(N)
complexity
[ 08:04 yuri ] Original commit 
py-loompy 2.0.14 biology new! files touched by this commit Work with .loom files for single-cell RNA-seq data
New port: biology/py-loompy: Work with .loom files for single-cell RNA-seq data
[ 07:53 yuri ] Original commit 
py-chempy 0.7.3 science new! files touched by this commit Package useful for solving problems in chemistry
science/py-chempy: Update 0.7.2 -> 0.7.3

Port changes:
* Add the EXTRAS option to install extra-dependencies
* Add the test target
[ 07:11 yuri ] Original commit 
py-PyFR 1.7.6 science new! files touched by this commit Framework for solving advection-diffusion type problems
New port: science/py-PyFR: Framework for solving advection-diffusion type
problems
[ 06:59 yuri ] Original commit 
py-pybind11 2.2.1_1 devel files touched by this commit Seamless interoperability between C++11 and Python
devel/py-pybind11: Supports python3
[ 05:32 yuri ] Original commit 
opencl 2.2_1 devel files touched by this commit Open Computing Language (OpenCL) specifications V2.2 (header files)
devel/opencl: Add NO_ARCH=yes

Approved by:	portmgr blanket
[ 03:48 yuri ] Original commit 
py-mpi4py 3.0.0 net new! files touched by this commit Python bindings for MPI
New port: net/py-mpi4py: Python bindings for MPI

PR:		211768
Submitted by:	Michael Danilov <mike.d.ft402@gmail.com>
Thu, 20 Sep 2018
[ 21:48 yuri ] Original commit 
py-gimmik 2.1 math new! files touched by this commit Generator of Matrix Multiplication Kernels
New port: math/py-gimmik: Generator of Matrix Multiplication Kernels
[ 17:44 yuri ] Original commit 
libxsmm 1.9 math new! files touched by this commit Library for dense and sparse matrix operations and deep learning
New port: math/libxsmm: Library for dense and sparse matrix operations and deep
learning
[ 15:00 yuri ] Original commit 
atompaw 4.1.0.4 science files touched by this commit Tool for projector augmented wave functions for molecular simulations
science/atompaw: Update 4.1.0.3 -> 4.1.0.4

Reported by:	portscout
[ 03:15 yuri ] Original commit 
py-secp256k1 0.13.2 math files touched by this commit FFI bindings to libsecp256k1
math/py-secp256k1: Remove test target and depends because tests aren't defined

Revert my commit r480150 because tests only exist in the github version, but not
in the CHEESESHOP version.

Approved by:	portmgr blanket
[ 01:22 yuri ] Original commit 
py-secp256k1 0.13.2 math files touched by this commit FFI bindings to libsecp256k1
math/py-secp256k1: Add the missing do-test target

Approved by:	portmgr blanket
[ 00:54 yuri ] Original commit 
py-pyodeint 0.10.1 math new! files touched by this commit Python binding for odeint from boost
New port: math/py-pyodeint: Python binding for odeint from boost
Wed, 19 Sep 2018
[ 23:50 yuri ] Original commit 
py-chempy 0.7.2 science new! files touched by this commit Package useful for solving problems in chemistry
science/py-chempy: Fix typos

Reported by:	wen
[ 23:46 yuri ] Original commit 
py-pycodeexport 0.1.2 devel new! files touched by this commit Python package for code generation
New port: devel/py-pycodeexport: Python package for code generation
[ 23:38 yuri ] Original commit 
py-pycompilation 0.4.3 devel new! files touched by this commit Package for compilation (meta programming)
New port: devel/py-pycompilation: Package for compilation (meta programming)
[ 23:11 yuri ] Original commit 
py-pygslodeiv2 0.9.1 math new! files touched by this commit Python binding for odeiv2 in GNU Scientific Library (GSL)
New port: math/py-pygslodeiv2: Python binding for odeiv2 in GNU Scientific
Library (GSL)
[ 22:52 yuri ] Original commit 
py-ufal.udpipe 1.2.0.1 textproc new! files touched by this commit Python bindings to UDPipe library for parsing universal treebanks
textproc/py-ufal.udpipe: Mark "BROKEN" on mips64 and powerpc64; Add
USES=compiler:c++11-lang

PR:		231494
Submitted by:	Piotr Kubaj <pkubaj@anongoth.pl>
[ 21:33 yuri ] Original commit 
py-chempy 0.7.2 science new! files touched by this commit Package useful for solving problems in chemistry
New port: science/py-chempy: Package useful useful for solving problems in
chemistry
[ 21:22 yuri ] Original commit 
py-PuLP 1.6.8_1 math new! files touched by this commit LP modeler written in python
math/py-PuLP: Add USE_PYTHON=concurrent
[ 20:39 yuri ] Original commit 
py-PuLP 1.6.8 math new! files touched by this commit LP modeler written in python
New port: math/py-PuLP: LP modeler written in python
[ 19:38 yuri ] Original commit 
giada 0.15.2 audio files touched by this commit Hardcore loop machine
audio/giada: Update 0.15.1 -> 0.15.2

Reported by:	portscout
[ 18:46 yuri ] Original commit 
oniguruma 6.9.0 devel files touched by this commit Regular expressions library compatible with POSIX/GNU/Perl
devel/oniguruma: Update 6.8.2 -> 6.9.0

Reported by:	portscout
[ 18:35 yuri ] Original commit 
py-spglib 1.10.4.11 science files touched by this commit Library for finding and handling crystal symmetries (python binding)
science/py-spglib: Update 1.10.4.1 -> 1.10.4.11

Reported by:	repology
[ 18:09 yuri ] Original commit 
ngs-sdk 2.9.2 biology files touched by this commit Tools and libraries for using data in the INSDC Sequence Read Archives
biology/ngs-sdk: Update 2.9.1 -> 2.9.2

Reported by:	portscout
[ 17:43 yuri ] Original commit 
arb 2.15.0 math files touched by this commit C library for arbitrary-precision interval arithmetic
math/arb: Update 2.14.0 -> 2.15.0

Reported by:	portscout
[ 17:42 yuri ] Original commit 
py-QtPy 1.5.1 devel files touched by this commit Abstraction layer on top of the various Qt bindings
devel/py-QtPy: Update 1.5.0 -> 1.5.1

Reported by:	portscout
[ 17:41 yuri ] Original commit 
py-permutation 0.1.1 math files touched by this commit Permutations of finitely many positive integers
math/py-permutation: Update 0.1.0-2 -> 0.1.1

Reported by:	portscout
[ 17:41 yuri ] Original commit 
qbittorrent 4.1.3 net-p2p files touched by this commit Bittorrent client using Qt4/5 and libtorrent-rasterbar
net-p2p/qbittorrent: Update 4.1.2 -> 4.1.3

Reported by:	portscout
Tue, 18 Sep 2018
[ 17:22 yuri ] Original commit 
tor-devel 0.3.5.1 security files touched by this commit Anonymizing overlay network for TCP
security/tor-devel: Update 0.3.4.7-rc -> 0.3.5.1-alpha

Changelog:
https://gitweb.torproject.org/tor.git/tree/ChangeLog?h=tor-0.3.5.1-alpha

Reported by:	upstream notification
[ 08:03 yuri ] Original commit 
mujs 1.0.5 lang files touched by this commit Embeddable Javascript interpreter in C
lang/mujs: Update 1.0.4 -> 1.0.5

Reported by:	portscout
[ 08:01 yuri ] Original commit 
engauge-digitizer 10.10 graphics files touched by this commit Extract data points from images of graphs
graphics/engauge-digitizer: Update 10.9 -> 10.10

Reported by:	portscout
[ 07:42 yuri ] Original commit 
py-chaospy 2.3.5 math files touched by this commit Toolbox for performing uncertainty quantification
math/py-chaospy: Update 2.3.4 -> 2.3.5

Reported by:	portscout
[ 07:42 yuri ] Original commit 
py-djvulibre 0.8.2 graphics files touched by this commit Python support for the DjVu image format
graphics/py-djvulibre: Update 0.8.1 -> 0.8.2

Reported by:	portscout
[ 07:41 yuri ] Original commit 
py-rapi 0.1.3 math files touched by this commit Minimal R API for Python
math/py-rapi: Update 0.1.2 -> 0.1.3

Reported by:	portscout
Mon, 17 Sep 2018
[ 22:23 yuri ] Original commit 
gpxsee 5.18 graphics files touched by this commit GPS log file viewer and analyzer
graphics/gpxsee: Change WWW to https

Approved by:	portmgr blanket
[ 20:48 yuri ] Original commit 
py-pymol 2.2.0 science files touched by this commit OpenGL-based molecular visualization system
science/py-pymol: Update 2.1.0 -> 2.2.0

Moved to GitHub.
Also update WWW.
[ 20:29 yuri ] Original commit 
py-pymatgen 2018.9.1 science files touched by this commit Python Materials Genomics is a robust materials analysis code
science/py-pymatgen: Update 2018.8.10 -> 2018.9.1

Reported by:	repology
[ 20:28 yuri ] Original commit 
py-filelock 3.0.8 sysutils files touched by this commit Platform independent file lock
sysutils/py-filelock: Update 3.0.6 -> 3.0.8

Reported by:	repology
[ 20:27 yuri ] Original commit 
py-pyodesys 0.12.3 math files touched by this commit Straightforward numerical integration of ODE systems from Python
math/py-pyodesys: Update 0.11.16 -> 0.12.3
[ 17:41 yuri ] Original commit 
py-libsass 0.15.0 www files touched by this commit Straightforward binding of libsass for Python
www/py-libsass: Update 0.14.5 -> 0.15.0

Reported by:	portscout
[ 17:41 yuri ] Original commit 
carla 1.9.11 audio files touched by this commit Audio LV2 plugin host for Jack and PulseAudio
audio/carla: Update 1.9.9 -> 1.9.11

Reported by:	portscout
[ 17:40 yuri ] Original commit 
py-pysam 0.15.1 biology files touched by this commit Python module for reading, manipulating and writing genomic data sets
biology/py-pysam: Update 0.15.0 -> 0.15.1

Reported by:	portscout
[ 08:40 yuri ] Original commit 
py-IBMQuantumExperience 2.0.3 devel files touched by this commit Python library for the Quantum Experience API
devel/py-IBMQuantumExperience: Update 2.0.2 -> 2.0.3

Reported by:	portscout
[ 08:37 yuri ] Original commit 
py-orange3-text 0.5.0 textproc files touched by this commit Text Mining add-on for Orange3
textproc/py-orange3-text: Update 0.4.1 -> 0.5.0

Reported by:	portscout
[ 08:36 yuri ] Original commit 
py-ufal.udpipe 1.2.0.1 textproc new! files touched by this commit Python bindings to UDPipe library for parsing universal treebanks
New port: textproc/py-ufal.udpipe: Python bindings to UDPipe library for parsing
universal treebanks
Sun, 16 Sep 2018
[ 17:16 yuri ] Original commit 
py-searx 0.14.0 www  Deleted files touched by this commit Privacy-respecting, hackable metasearch engine
searx 0.14.0_1 www new! files touched by this commit Privacy-respecting, hackable metasearch engine
www/py-searx: Move to www/searx because this is a server, not a library

Port changes:
* Add USE_PYTHON=noflavors
* While here, add missing dependency dns/py-idna

PR:		231401
Approved by:	loic.blot@unix-experience.fr (maintainer)
Sat, 15 Sep 2018
[ 03:52 yuri ] Original commit 
openmx 3.8.5 science files touched by this commit Nanoscale material simulations using density functional theories (DFT)
science/openmx: BROKEN on i386 pending the llvm bug resolution

Reported by:	fallout
Fri, 14 Sep 2018
[ 07:58 yuri ] Original commit 
cp2k 6.1_1 science files touched by this commit Quantum chemistry and solid state physics software package
science/cp2k: Require the option OPENMP=on in fftw3 for options OPENMP and
OPENMP_MPI

PR:		231163
Submitted by:	jhale
[ 07:44 yuri ] Original commit 
luscus 0.8.5 science new! files touched by this commit Molecular editor and viewer
New port: science/luscus: Molecular editor and viewer
[ 05:37 yuri ] Original commit 
py-phono3py 1.13.3.27 science new! files touched by this commit Software to calculate phonon-phonon interaction and related properties
New port: science/py-phono3py: Software to calculate phonon-phonon interaction
and related properties
[ 05:01 yuri ] Original commit 
py-phonopy 1.13.2.107 science new! files touched by this commit Package for phonon calculations at harmonic and quasi-harmonic levels
New port: science/py-phonopy: Package for phonon calculations at harmonic and
quasi-harmonic levels
[ 03:10 yuri ] Original commit 
py-molmod 1.4.4 science new! files touched by this commit Collection of molecular modelling tools for python
New port: science/py-molmod: Collection of molecular modelling tools for python
Thu, 13 Sep 2018
[ 19:16 yuri ] Original commit 
dftbplus 18.2_1 science files touched by this commit DFTB+: Package for performing fast atomistic simulations
science/dftbplus: Correct license; Correct patches

Port changes:
* Change LICENSE to GPLv3: LGPL3+ combined with GPLv1+ yields GPLv3
* Remove some unnecessary patches, also correct patch, binaries don't change
[ 17:38 yuri ] Original commit 
dftbplus 18.2_1 science files touched by this commit DFTB+: Package for performing fast atomistic simulations
science/dftbplus: Update license; Add the 'test' target; etc.

Port changes:
* Fix the mistake in LICENSE
* Add the 'test' target, bundle the test potentials for it
* Update COMMENT to include a commonly known name for this package
* Pass build params via MAKE_ARGS, remove unnecessary patch related to this
* Add a patch to the makefile to print build parameters
[ 06:34 yuri ] Original commit 
qbox 1.66.2 science files touched by this commit First-principles molecular dynamics code
science/qbox: Update 1.66.1 -> 1.66.2

Reported by:	portscout
[ 00:26 yuri ] Original commit 
dftbplus 18.2_1 science files touched by this commit DFTB+: Package for performing fast atomistic simulations
science/dftbplus: Fix ARPACK handling; Link with clang; etc

* ARPACK option is for non-MPI build only
* Make it link using clang
* Add openmp dependency
Wed, 12 Sep 2018
[ 22:25 yuri ] Original commit 
dftbplus 18.2 science files touched by this commit DFTB+: Package for performing fast atomistic simulations
New port: science/dftbplus: Package for performing fast atomistic simulations
[ 06:35 yuri ] Original commit 
qbox 1.66.1 science files touched by this commit First-principles molecular dynamics code
science/qbox: Update 1.65.0 -> 1.66.1

Reported by:	portscout
[ 06:33 yuri ] Original commit 
PETSc 3.9.4 science files touched by this commit Suite of data structures and routines from Argonne National Laboratory
science/PETSc: Update 3.9.3 -> 3.9.4

Reported by:	portscout
[ 03:00 yuri ] Original commit 
openmx 3.8.5 science files touched by this commit Nanoscale material simulations using density functional theories (DFT)
New port: science/openmx: Nanoscale material simulations using density
functional theories (DFT)
Tue, 11 Sep 2018
[ 20:55 yuri ] Original commit 
amass 2.6.0.11 dns files touched by this commit In-depth DNS enumeration
New port: dns/amass: In-depth DNS enumeration
[ 20:36 yuri ] Original commit 
vuxml 1.1_3 security files touched by this commit Vulnerability and eXposure Markup Language DTD
Add VuXML vulnerability CVE-2018-15598 for traefik.

Port update is already MFHed.
[ 18:57 yuri ] Original commit 
rhvoice 0.7.1.4_1 audio files touched by this commit Speech synthesizer for English, Russian, Georgian, and other languages
audio/rhvoice: Fix LICENSE_FILE_xx lines

Reported by:	mat
[ 06:00 yuri ] Original commit 
rhvoice 0.7.1.4_1 audio files touched by this commit Speech synthesizer for English, Russian, Georgian, and other languages
audio/rhvoice: Correct license, etc

Port changes:
* Correct license
* Rename PORTNAME into RHVoice: the project is called RHVoice, installs files
and directories the include the "RHVoice" string,
  DATADIR and ETCDIR are now derived correctly
* Add @sample for the config file
[ 05:26 yuri ] Original commit 
rhvoice 0.7.1.4 audio files touched by this commit Speech synthesizer for English, Russian, Georgian, and other languages
audio/rhvoice: Correction
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